Wall clock time and date at job start Tue Mar 31 2020 21:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47149 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47008 * 29.99840 * 3 2 1 6 6 H 1.48501 * 109.47209 * 150.00150 * 3 2 1 7 7 C 1.38658 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00063 * 0.02562 * 7 2 1 9 9 O 1.34832 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.35741 * 116.99992 * 185.06579 * 9 7 2 11 11 C 1.38941 * 120.03931 * 174.46611 * 10 9 7 12 12 C 1.38111 * 120.04114 * 179.97438 * 11 10 9 13 13 C 1.38233 * 120.12227 * 0.02562 * 12 11 10 14 14 C 1.38779 * 120.08277 * 359.97438 * 13 12 11 15 15 O 1.35899 * 120.02235 * 180.02562 * 14 13 12 16 16 S 1.52201 * 114.00252 * 269.98115 * 15 14 13 17 17 O 1.42098 * 106.40357 * 188.53832 * 16 15 14 18 18 O 1.42103 * 106.39895 * 321.45874 * 16 15 14 19 19 C 1.76198 * 107.22193 * 74.99381 * 16 15 14 20 20 C 1.38240 * 119.97930 * 269.73500 * 19 16 15 21 21 C 1.38197 * 120.03153 * 179.72372 * 20 19 16 22 22 C 1.38461 * 119.96793 * 0.56873 * 21 20 19 23 23 F 1.35107 * 120.02606 * 179.68341 * 22 21 20 24 24 C 1.38460 * 119.95208 * 359.69895 * 22 21 20 25 25 C 1.38201 * 119.97183 * 0.02562 * 24 22 21 26 26 C 1.38616 * 119.95808 * 0.02562 * 14 13 12 27 27 H 0.96993 * 120.00687 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.98158 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.93596 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.95475 * 179.97438 * 13 12 11 31 31 H 1.08001 * 119.98597 * 359.97207 * 20 19 16 32 32 H 1.07997 * 120.02027 * 180.24822 * 21 20 19 33 33 H 1.08002 * 120.01531 * 179.97438 * 24 22 21 34 34 H 1.07996 * 119.98314 * 179.97438 * 25 24 22 35 35 H 1.07997 * 120.06155 * 179.72795 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4055 -0.1052 11 6 5.3560 -2.4713 -0.2269 12 6 5.9831 -3.6971 -0.3346 13 6 5.2377 -4.8611 -0.3220 14 6 3.8565 -4.8014 -0.2007 15 8 3.1249 -5.9466 -0.1880 16 16 2.6723 -6.4075 -1.5661 17 8 1.7674 -7.4821 -1.3527 18 8 2.3280 -5.2333 -2.2887 19 6 4.0791 -7.0945 -2.3745 20 6 4.8960 -6.2876 -3.1444 21 6 6.0028 -6.8242 -3.7743 22 6 6.2868 -8.1731 -3.6436 23 9 7.3650 -8.7002 -4.2641 24 6 5.4648 -8.9815 -2.8768 25 6 4.3617 -8.4414 -2.2432 26 6 3.2236 -3.5730 -0.0925 27 1 -0.4851 0.8399 -0.0004 28 1 5.9406 -1.5632 -0.2374 29 1 7.0578 -3.7461 -0.4295 30 1 5.7309 -5.8182 -0.4068 31 1 4.6713 -5.2366 -3.2503 32 1 6.6431 -6.1929 -4.3724 33 1 5.6852 -10.0338 -2.7746 34 1 3.7203 -9.0719 -1.6455 35 1 2.1485 -3.5244 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309578047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:08 Heat of formation + Delta-G solvation = -113.268620 kcal Electronic energy + Delta-G solvation = -26600.293516 eV Core-core repulsion = 22379.231571 eV Total energy + Delta-G solvation = -4221.061945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.41481 -40.78238 -39.25545 -38.86572 -37.23035 -36.33439 -35.88299 -32.54269 -31.59051 -31.16383 -30.10547 -29.38451 -25.52573 -23.58709 -23.53929 -23.21958 -21.88065 -20.32646 -18.97560 -18.36573 -18.12818 -17.71265 -17.39524 -16.84543 -16.16763 -16.06460 -15.64232 -15.49753 -14.97936 -14.61117 -14.21325 -14.08120 -13.98091 -13.75674 -13.68588 -13.50427 -13.23010 -13.00523 -12.70197 -12.40051 -12.27266 -12.06941 -11.97603 -11.53816 -11.49025 -11.37853 -11.11105 -10.93932 -10.89226 -10.39130 -9.68438 -9.55074 -9.51489 -9.03495 -8.58048 -7.75240 -6.54921 -4.23221 0.12185 0.41135 0.81642 1.61597 1.83070 2.47634 3.01665 3.14115 3.18397 3.30531 3.66414 3.74294 4.00215 4.11584 4.12766 4.39671 4.46190 4.54876 4.83564 4.87986 4.95552 5.16969 5.26456 5.30863 5.42856 5.48771 5.60602 5.64814 5.70987 5.74091 5.80311 6.11397 6.38351 6.42287 6.60547 6.71322 6.83337 7.22178 7.59783 7.84079 8.77161 9.31271 10.51578 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.003526 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.286981 B = 7938.954067 C = 8731.779024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.396 4.396 8 H 0.110 0.890 9 O -0.199 6.199 10 C 0.170 3.830 11 C -0.172 4.172 12 C -0.062 4.062 13 C -0.213 4.213 14 C 0.101 3.899 15 O -0.657 6.657 16 S 2.677 3.323 17 O -0.937 6.937 18 O -0.937 6.937 19 C -0.709 4.709 20 C 0.024 3.976 21 C -0.176 4.176 22 C 0.154 3.846 23 F -0.132 7.132 24 C -0.180 4.180 25 C 0.013 3.987 26 C -0.193 4.193 27 H 0.283 0.717 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.147 -13.488 -4.890 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.128 0.872 9 O -0.103 6.103 10 C 0.116 3.884 11 C -0.193 4.193 12 C -0.081 4.081 13 C -0.234 4.234 14 C 0.060 3.940 15 O -0.617 6.617 16 S 2.768 3.232 17 O -0.935 6.935 18 O -0.935 6.935 19 C -0.792 4.792 20 C 0.005 3.995 21 C -0.195 4.195 22 C 0.135 3.865 23 F -0.110 7.110 24 C -0.200 4.200 25 C -0.006 4.006 26 C -0.215 4.215 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.338 -13.078 -4.629 18.566 hybrid contribution 0.856 -0.032 -0.453 0.969 sum 13.194 -13.111 -5.082 19.282 Atomic orbital electron populations 1.69638 1.05676 1.28935 1.45929 1.24508 0.95063 0.99014 0.95168 0.86161 0.80321 0.81136 0.79175 1.19606 1.20563 1.18193 1.20845 0.76416 0.97042 1.52806 0.87236 1.83595 1.23094 1.24917 1.78690 1.18777 0.91475 0.84924 0.93251 1.20444 0.91807 0.98508 1.08499 1.20480 0.99008 0.90624 0.97949 1.20714 0.91081 0.99515 1.12078 1.17804 0.89003 0.80437 1.06796 1.85675 1.73211 1.46914 1.55866 1.02620 0.73716 0.74078 0.72766 1.93598 1.59659 1.56062 1.84204 1.93701 1.81454 1.46184 1.72175 1.31366 1.24880 1.04675 1.18320 1.20952 0.89807 1.00245 0.88531 1.21296 1.00304 0.93713 1.04208 1.18021 0.83941 0.92280 0.92289 1.91544 1.52498 1.86857 1.80144 1.21252 0.96691 1.01109 1.00905 1.20835 0.93873 0.92674 0.93202 1.21323 1.02533 0.90133 1.07526 0.90659 0.85275 0.85222 0.85898 0.82662 0.83514 0.83707 0.83085 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.28 13.96 55.48 0.77 -23.51 16 2 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 3 Si 0.91 20.51 28.62 -169.99 -4.86 15.65 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.40 -10.74 9.95 30.89 0.31 -10.43 16 8 H 0.11 3.08 5.43 -52.49 -0.29 2.79 16 9 O -0.20 -4.89 8.58 0.07 0.00 -4.89 16 10 C 0.17 3.60 6.65 -39.13 -0.26 3.34 16 11 C -0.17 -2.90 9.99 -39.37 -0.39 -3.29 16 12 C -0.06 -0.86 10.03 -39.63 -0.40 -1.26 16 13 C -0.21 -3.11 8.40 -39.38 -0.33 -3.44 16 14 C 0.10 1.79 4.80 -39.24 -0.19 1.60 16 15 O -0.66 -11.06 10.16 -51.55 -0.52 -11.58 16 16 S 2.68 42.88 5.42 -107.50 -0.58 42.30 16 17 O -0.94 -16.31 17.27 -66.81 -1.15 -17.47 16 18 O -0.94 -17.74 15.59 -66.81 -1.04 -18.78 16 19 C -0.71 -8.91 5.27 -39.58 -0.21 -9.12 16 20 C 0.02 0.27 8.46 -39.60 -0.33 -0.06 16 21 C -0.18 -1.72 10.03 -39.51 -0.40 -2.12 16 22 C 0.15 1.52 7.30 -39.42 -0.29 1.23 16 23 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 24 C -0.18 -1.66 10.03 -39.51 -0.40 -2.05 16 25 C 0.01 0.14 9.52 -39.59 -0.38 -0.24 16 26 C -0.19 -4.06 8.31 -39.25 -0.33 -4.39 16 27 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.47 7.95 -52.48 -0.42 1.05 16 31 H 0.16 1.79 7.61 -52.49 -0.40 1.39 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.35 7.61 -52.49 -0.40 0.95 16 35 H 0.15 3.40 5.63 -52.49 -0.30 3.11 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -31.24 327.20 -8.73 -39.97 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.62 Total: 3.14 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -3.69 Total: -28.50 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.77 Total: -23.51 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -2.72 Total: -52.72 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.86 Total: 15.65 kcal Atomic # 16 Polarization: 42.88 SS G_CDS: -0.58 Total: 42.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.24 -8.73 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309578047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.294 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds