Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47149 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47008 * 29.99840 * 3 2 1 6 6 H 1.48501 * 109.47209 * 150.00150 * 3 2 1 7 7 C 1.38658 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00063 * 0.02562 * 7 2 1 9 9 O 1.34832 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.35741 * 116.99992 * 185.06579 * 9 7 2 11 11 C 1.38941 * 120.03931 * 174.46611 * 10 9 7 12 12 C 1.38111 * 120.04114 * 179.97438 * 11 10 9 13 13 C 1.38233 * 120.12227 * 0.02562 * 12 11 10 14 14 C 1.38779 * 120.08277 * 359.97438 * 13 12 11 15 15 O 1.35899 * 120.02235 * 180.02562 * 14 13 12 16 16 S 1.52201 * 114.00252 * 269.98115 * 15 14 13 17 17 O 1.42098 * 106.40357 * 188.53832 * 16 15 14 18 18 O 1.42103 * 106.39895 * 321.45874 * 16 15 14 19 19 C 1.76198 * 107.22193 * 74.99381 * 16 15 14 20 20 C 1.38240 * 119.97930 * 269.73500 * 19 16 15 21 21 C 1.38197 * 120.03153 * 179.72372 * 20 19 16 22 22 C 1.38461 * 119.96793 * 0.56873 * 21 20 19 23 23 F 1.35107 * 120.02606 * 179.68341 * 22 21 20 24 24 C 1.38460 * 119.95208 * 359.69895 * 22 21 20 25 25 C 1.38201 * 119.97183 * 0.02562 * 24 22 21 26 26 C 1.38616 * 119.95808 * 0.02562 * 14 13 12 27 27 H 0.96993 * 120.00687 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.98158 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.93596 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.95475 * 179.97438 * 13 12 11 31 31 H 1.08001 * 119.98597 * 359.97207 * 20 19 16 32 32 H 1.07997 * 120.02027 * 180.24822 * 21 20 19 33 33 H 1.08002 * 120.01531 * 179.97438 * 24 22 21 34 34 H 1.07996 * 119.98314 * 179.97438 * 25 24 22 35 35 H 1.07997 * 120.06155 * 179.72795 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4055 -0.1052 11 6 5.3560 -2.4713 -0.2269 12 6 5.9831 -3.6971 -0.3346 13 6 5.2377 -4.8611 -0.3220 14 6 3.8565 -4.8014 -0.2007 15 8 3.1249 -5.9466 -0.1880 16 16 2.6723 -6.4075 -1.5661 17 8 1.7674 -7.4821 -1.3527 18 8 2.3280 -5.2333 -2.2887 19 6 4.0791 -7.0945 -2.3745 20 6 4.8960 -6.2876 -3.1444 21 6 6.0028 -6.8242 -3.7743 22 6 6.2868 -8.1731 -3.6436 23 9 7.3650 -8.7002 -4.2641 24 6 5.4648 -8.9815 -2.8768 25 6 4.3617 -8.4414 -2.2432 26 6 3.2236 -3.5730 -0.0925 27 1 -0.4851 0.8399 -0.0004 28 1 5.9406 -1.5632 -0.2374 29 1 7.0578 -3.7461 -0.4295 30 1 5.7309 -5.8182 -0.4068 31 1 4.6713 -5.2366 -3.2503 32 1 6.6431 -6.1929 -4.3724 33 1 5.6852 -10.0338 -2.7746 34 1 3.7203 -9.0719 -1.6455 35 1 2.1485 -3.5244 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309578047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -134.070292 kcal Electronic energy + Delta-G solvation = -26601.195544 eV Core-core repulsion = 22379.231571 eV Total energy + Delta-G solvation = -4221.963973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.16860 -42.18522 -40.45580 -40.09352 -38.61202 -37.83399 -37.27255 -34.49615 -32.39046 -32.04952 -31.53952 -30.86773 -27.39999 -24.73630 -24.44534 -24.30683 -23.35348 -21.72037 -20.24078 -20.00894 -19.32666 -18.97393 -18.58137 -17.97627 -17.41025 -17.05053 -16.98330 -16.80222 -15.99934 -15.91470 -15.78258 -15.74500 -15.10347 -14.91840 -14.75995 -14.55456 -14.48346 -14.22049 -14.17737 -13.82578 -13.77562 -13.47443 -13.38194 -13.05564 -12.82814 -12.54821 -12.44376 -12.28633 -12.11672 -12.05444 -11.58786 -10.95203 -10.36694 -10.33546 -9.95855 -9.33344 -8.52399 -6.28893 -1.08655 -0.56311 0.03151 0.20849 0.42393 1.22131 1.34304 1.39184 1.54917 2.14221 2.27764 2.45978 2.55640 2.90439 2.94601 2.95611 3.04298 3.50156 3.74632 3.78675 3.92632 4.04039 4.05099 4.17721 4.23066 4.40123 4.49492 4.73196 4.79097 4.81003 4.88733 4.93386 5.06830 5.16455 5.27773 5.35828 5.60580 5.63675 5.76581 6.03015 6.79232 7.44420 8.59317 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.003526 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.286981 B = 7938.954067 C = 8731.779024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.408 4.408 8 H 0.073 0.927 9 O -0.226 6.226 10 C 0.136 3.864 11 C -0.157 4.157 12 C -0.042 4.042 13 C -0.177 4.177 14 C 0.088 3.912 15 O -0.663 6.663 16 S 2.678 3.322 17 O -0.961 6.961 18 O -0.978 6.978 19 C -0.709 4.709 20 C 0.011 3.989 21 C -0.166 4.166 22 C 0.158 3.842 23 F -0.128 7.128 24 C -0.168 4.168 25 C 0.009 3.991 26 C -0.227 4.227 27 H 0.287 0.713 28 H 0.157 0.843 29 H 0.193 0.807 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.644 -15.196 -5.783 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.484 4.484 8 H 0.091 0.909 9 O -0.133 6.133 10 C 0.086 3.914 11 C -0.177 4.177 12 C -0.059 4.059 13 C -0.197 4.197 14 C 0.047 3.953 15 O -0.622 6.622 16 S 2.776 3.224 17 O -0.959 6.959 18 O -0.977 6.977 19 C -0.798 4.798 20 C -0.008 4.008 21 C -0.185 4.185 22 C 0.139 3.861 23 F -0.107 7.107 24 C -0.188 4.188 25 C -0.011 4.011 26 C -0.248 4.248 27 H 0.097 0.903 28 H 0.175 0.825 29 H 0.210 0.790 30 H 0.183 0.817 31 H 0.168 0.832 32 H 0.190 0.810 33 H 0.193 0.807 34 H 0.181 0.819 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.820 -14.814 -5.494 23.816 hybrid contribution -0.525 0.008 -0.279 0.594 sum 17.295 -14.806 -5.773 23.488 Atomic orbital electron populations 1.69745 1.07350 1.29976 1.49030 1.25428 0.95923 1.02670 0.94892 0.85115 0.79020 0.76409 0.79530 1.18797 1.19397 1.17506 1.20668 0.78050 0.96100 1.53619 0.90947 1.83531 1.21098 1.26459 1.82176 1.19440 0.93422 0.84000 0.94519 1.20972 0.89593 1.01265 1.05868 1.21208 1.01735 0.88465 0.94517 1.21360 0.89220 1.02089 1.07070 1.18011 0.90441 0.79549 1.07310 1.85646 1.73680 1.46420 1.56502 1.02100 0.74735 0.73246 0.72354 1.93555 1.61655 1.56171 1.84502 1.93656 1.83009 1.48203 1.72828 1.30642 1.23732 1.05787 1.19610 1.20970 0.90538 1.00098 0.89227 1.21478 0.99506 0.94134 1.03386 1.18132 0.83827 0.92340 0.91826 1.91567 1.52316 1.86785 1.79997 1.21533 0.95315 1.02540 0.99362 1.21045 0.94643 0.91763 0.93600 1.21260 1.01068 0.92370 1.10147 0.90336 0.82531 0.79004 0.81664 0.83235 0.80998 0.80690 0.81905 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.64 13.96 21.61 0.30 -55.33 16 2 C 0.01 0.57 5.49 84.84 0.47 1.04 16 3 Si 0.98 43.92 28.62 68.60 1.96 45.88 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.41 -24.11 9.95 67.92 0.68 -23.43 16 8 H 0.07 4.64 5.43 -2.91 -0.02 4.63 16 9 O -0.23 -11.66 8.58 -22.65 -0.19 -11.86 16 10 C 0.14 5.94 6.65 22.56 0.15 6.09 16 11 C -0.16 -4.80 9.99 22.41 0.22 -4.58 16 12 C -0.04 -0.91 10.03 22.24 0.22 -0.69 16 13 C -0.18 -4.44 8.40 22.40 0.19 -4.26 16 14 C 0.09 3.13 4.80 22.49 0.11 3.24 16 15 O -0.66 -22.89 10.16 -61.69 -0.63 -23.52 16 16 S 2.68 88.56 5.42 -56.49 -0.31 88.25 16 17 O -0.96 -34.73 17.27 -118.78 -2.05 -36.78 16 18 O -0.98 -39.78 15.59 -118.78 -1.85 -41.63 16 19 C -0.71 -16.41 5.27 22.27 0.12 -16.29 16 20 C 0.01 0.22 8.46 22.26 0.19 0.41 16 21 C -0.17 -2.49 10.03 22.31 0.22 -2.27 16 22 C 0.16 2.33 7.30 22.38 0.16 2.50 16 23 F -0.13 -1.89 17.27 44.97 0.78 -1.12 16 24 C -0.17 -2.30 10.03 22.31 0.22 -2.08 16 25 C 0.01 0.16 9.52 22.26 0.21 0.37 16 26 C -0.23 -10.19 8.31 22.48 0.19 -10.00 16 27 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.17 2.88 7.95 -2.91 -0.02 2.86 16 31 H 0.15 3.20 7.61 -2.91 -0.02 3.17 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 34 H 0.16 2.50 7.61 -2.91 -0.02 2.48 16 35 H 0.11 5.69 5.63 -2.91 -0.02 5.68 16 Total: -1.00 -77.19 327.20 2.52 -74.67 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.16 Total: 11.39 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 3.35 Total: -49.96 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.30 Total: -55.33 kcal Atomic # 8 Polarization: -109.07 SS G_CDS: -4.72 Total: -113.79 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.78 Total: -1.12 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.96 Total: 45.88 kcal Atomic # 16 Polarization: 88.56 SS G_CDS: -0.31 Total: 88.25 kcal Total: -77.19 2.52 -74.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309578047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.396 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds