Wall clock time and date at job start Tue Mar 31 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42096 * 110.54009 * 2 1 4 4 O 1.42096 * 110.54332 * 223.24878 * 2 1 3 5 5 N 1.65597 * 104.44812 * 111.62470 * 2 1 3 6 6 C 1.38884 * 120.00280 * 65.00186 * 5 2 1 7 7 N 1.29689 * 125.41530 * 0.02562 * 6 5 2 8 8 N 1.37765 * 115.59170 * 180.02562 * 7 6 5 9 9 C 1.29534 * 115.64175 * 0.02562 * 8 7 6 10 10 N 1.39268 * 125.40065 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00225 * 0.02628 * 10 9 8 12 12 O 1.21296 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00384 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.47456 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00077 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99954 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46694 * 90.00144 * 19 17 15 21 21 H 1.48492 * 109.47281 * 210.00211 * 19 17 15 22 22 H 1.48503 * 109.46999 * 330.00523 * 19 17 15 23 23 S 1.76040 * 109.19897 * 359.97438 * 9 8 7 24 24 H 1.08998 * 109.47238 * 308.37775 * 1 2 3 25 25 H 1.09006 * 109.46448 * 68.37556 * 1 2 3 26 26 H 1.08997 * 109.46961 * 188.37180 * 1 2 3 27 27 H 0.97000 * 119.99865 * 245.00014 * 5 2 1 28 28 H 0.97000 * 120.00257 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.47142 * 299.99711 * 13 11 10 30 30 H 1.09002 * 109.47601 * 59.99311 * 13 11 10 31 31 H 0.96998 * 119.99832 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.9083 -1.8989 1.8321 7 7 1.2915 -2.7460 1.0679 8 7 1.0781 -3.9932 1.6128 9 6 1.5200 -4.1611 2.8188 10 7 1.4138 -5.3349 3.5608 11 6 0.8112 -6.4165 3.0284 12 8 0.3609 -6.3675 1.9032 13 6 0.6958 -7.6864 3.8315 14 16 -0.1567 -8.9458 2.8499 15 6 -0.1521 -10.2830 3.9973 16 1 0.2974 -10.1573 4.9712 17 6 -0.7262 -11.4978 3.6494 18 7 -1.2736 -11.6511 2.4622 19 14 -0.7207 -12.9158 4.8655 20 1 -1.9481 -12.8573 5.6994 21 1 -0.6860 -14.2026 4.1253 22 1 0.4762 -12.8144 5.7386 23 16 2.2760 -2.6703 3.3711 24 1 -0.3633 0.6380 0.8056 25 1 -0.3632 0.3788 -0.9554 26 1 -0.3633 -1.0167 0.1496 27 1 2.6920 -0.0236 2.1256 28 1 1.7736 -5.3740 4.4608 29 1 1.6921 -8.0425 4.0935 30 1 0.1290 -7.4906 4.7418 31 1 -1.6752 -12.5000 2.2192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318000111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:48 Heat of formation + Delta-G solvation = -17.735541 kcal Electronic energy + Delta-G solvation = -21166.098033 eV Core-core repulsion = 17443.755154 eV Total energy + Delta-G solvation = -3722.342879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.001 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.47977 -39.26897 -37.62605 -36.56756 -36.29817 -34.74882 -32.51318 -30.75472 -29.93101 -29.02626 -25.64136 -25.07825 -23.01754 -21.04551 -20.27336 -19.39180 -18.50893 -18.01626 -17.45277 -16.87795 -16.72092 -16.19724 -16.02837 -15.69273 -15.02172 -14.87720 -14.27838 -13.82403 -13.74170 -13.61906 -13.54406 -13.22362 -12.99663 -12.70532 -12.60500 -12.45377 -12.17472 -11.51496 -11.14595 -11.10687 -10.98718 -10.88460 -10.85963 -10.69459 -9.93653 -9.69374 -9.68796 -9.14838 -8.97128 -8.37999 -6.62446 -6.29778 -4.02676 -0.57758 0.06914 0.44113 0.56241 1.72660 1.93034 2.46099 2.82375 3.12172 3.17658 3.19351 3.24960 3.32903 3.54208 3.71027 4.09914 4.29959 4.38636 4.53325 4.91519 5.05783 5.10797 5.32048 5.44765 5.63528 5.77090 5.82259 5.92753 6.81647 7.51461 7.67460 8.10102 8.26515 9.15430 10.77537 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.038057 B = 0.002127 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.568685 B =13162.351968 C =13685.556664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.602 3.398 3 O -0.944 6.944 4 O -0.916 6.916 5 N -1.002 6.002 6 C 0.281 3.719 7 N -0.304 5.304 8 N -0.248 5.248 9 C 0.290 3.710 10 N -0.631 5.631 11 C 0.523 3.477 12 O -0.439 6.439 13 C -0.149 4.149 14 S -0.051 6.051 15 C -0.539 4.539 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.866 5.866 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.272 1.272 23 S 0.068 5.932 24 H 0.130 0.870 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.439 0.561 28 H 0.425 0.575 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 25.304 5.107 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.694 3.306 3 O -0.935 6.935 4 O -0.906 6.906 5 N -0.754 5.754 6 C -0.102 4.102 7 N -0.137 5.137 8 N -0.081 5.081 9 C -0.092 4.092 10 N -0.286 5.286 11 C 0.307 3.693 12 O -0.303 6.303 13 C -0.300 4.300 14 S 0.175 5.825 15 C -0.687 4.687 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.500 5.500 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 S 0.299 5.701 24 H 0.149 0.851 25 H 0.156 0.844 26 H 0.161 0.839 27 H 0.277 0.723 28 H 0.264 0.736 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.340 25.225 1.858 26.076 hybrid contribution 0.402 -0.769 3.266 3.379 sum 6.742 24.456 5.124 25.881 Atomic orbital electron populations 1.30365 1.25600 1.13127 1.12044 1.05529 0.78587 0.73885 0.72554 1.93667 1.78606 1.36710 1.84494 1.93709 1.76962 1.60637 1.59290 1.53306 1.69869 1.14182 1.38089 1.25187 1.00067 0.90814 0.94142 1.75465 1.17802 0.96145 1.24304 1.75775 1.20584 1.06197 1.05563 1.25974 0.98261 0.91755 0.93196 1.43570 1.59263 1.07599 1.18211 1.20971 0.77016 0.83413 0.87943 1.90885 1.40885 1.81092 1.17460 1.23552 1.06674 0.95975 1.03787 1.85580 1.72823 1.03683 1.20369 1.22835 1.44874 0.98363 1.02630 0.90686 1.25007 0.94424 0.98216 0.95894 1.70008 1.35147 1.25723 1.19160 0.86136 0.78638 0.80365 0.80173 1.20221 1.20705 1.19645 1.85596 1.63196 1.05752 1.15587 0.85108 0.84377 0.83898 0.72265 0.73624 0.88263 0.88276 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.67 10.77 101.05 1.09 -2.58 16 2 S 2.60 20.96 5.83 -107.50 -0.63 20.33 16 3 O -0.94 -9.00 18.08 -57.54 -1.04 -10.04 16 4 O -0.92 -11.88 17.25 -57.54 -0.99 -12.87 16 5 N -1.00 -6.76 5.76 30.83 0.18 -6.59 16 6 C 0.28 2.85 8.10 -87.41 -0.71 2.14 16 7 N -0.30 -4.35 10.22 30.85 0.32 -4.03 16 8 N -0.25 -4.14 10.22 30.90 0.32 -3.83 16 9 C 0.29 3.75 8.34 -87.16 -0.73 3.03 16 10 N -0.63 -7.59 5.41 -11.79 -0.06 -7.65 16 11 C 0.52 8.95 7.81 -10.99 -0.09 8.87 16 12 O -0.44 -9.67 14.53 5.54 0.08 -9.59 16 13 C -0.15 -2.65 6.16 36.00 0.22 -2.43 16 14 S -0.05 -1.31 20.57 -107.50 -2.21 -3.52 16 15 C -0.54 -14.58 9.50 30.94 0.29 -14.28 16 16 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 18 N -0.87 -25.41 13.22 55.49 0.73 -24.67 16 19 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 S 0.07 0.55 23.39 -107.50 -2.51 -1.96 16 24 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.14 1.05 7.36 -51.93 -0.38 0.67 16 27 H 0.44 1.36 8.91 -34.47 -0.31 1.06 16 28 H 0.43 3.08 8.82 -40.82 -0.36 2.72 16 29 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.10 1.54 8.14 -51.91 -0.42 1.12 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -40.68 325.32 -8.25 -48.92 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.28 Total: -1.73 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.01 Total: -3.31 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.48 Total: -46.77 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.95 Total: -32.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 20.20 SS G_CDS: -5.35 Total: 14.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -40.68 -8.25 -48.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318000111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.189 kcal (2) G-P(sol) polarization free energy of solvation -40.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds