Wall clock time and date at job start Tue Mar 31 2020 20:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42096 * 110.54009 * 2 1 4 4 O 1.42096 * 110.54332 * 223.24878 * 2 1 3 5 5 N 1.65597 * 104.44812 * 111.62470 * 2 1 3 6 6 C 1.38884 * 120.00280 * 65.00186 * 5 2 1 7 7 N 1.29689 * 125.41530 * 0.02562 * 6 5 2 8 8 N 1.37765 * 115.59170 * 180.02562 * 7 6 5 9 9 C 1.29534 * 115.64175 * 0.02562 * 8 7 6 10 10 N 1.39268 * 125.40065 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00225 * 0.02628 * 10 9 8 12 12 O 1.21296 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00384 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.47456 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00077 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99954 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46694 * 90.00144 * 19 17 15 21 21 H 1.48492 * 109.47281 * 210.00211 * 19 17 15 22 22 H 1.48503 * 109.46999 * 330.00523 * 19 17 15 23 23 S 1.76040 * 109.19897 * 359.97438 * 9 8 7 24 24 H 1.08998 * 109.47238 * 308.37775 * 1 2 3 25 25 H 1.09006 * 109.46448 * 68.37556 * 1 2 3 26 26 H 1.08997 * 109.46961 * 188.37180 * 1 2 3 27 27 H 0.97000 * 119.99865 * 245.00014 * 5 2 1 28 28 H 0.97000 * 120.00257 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.47142 * 299.99711 * 13 11 10 30 30 H 1.09002 * 109.47601 * 59.99311 * 13 11 10 31 31 H 0.96998 * 119.99832 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.9083 -1.8989 1.8321 7 7 1.2915 -2.7460 1.0679 8 7 1.0781 -3.9932 1.6128 9 6 1.5200 -4.1611 2.8188 10 7 1.4138 -5.3349 3.5608 11 6 0.8112 -6.4165 3.0284 12 8 0.3609 -6.3675 1.9032 13 6 0.6958 -7.6864 3.8315 14 16 -0.1567 -8.9458 2.8499 15 6 -0.1521 -10.2830 3.9973 16 1 0.2974 -10.1573 4.9712 17 6 -0.7262 -11.4978 3.6494 18 7 -1.2736 -11.6511 2.4622 19 14 -0.7207 -12.9158 4.8655 20 1 -1.9481 -12.8573 5.6994 21 1 -0.6860 -14.2026 4.1253 22 1 0.4762 -12.8144 5.7386 23 16 2.2760 -2.6703 3.3711 24 1 -0.3633 0.6380 0.8056 25 1 -0.3632 0.3788 -0.9554 26 1 -0.3633 -1.0167 0.1496 27 1 2.6920 -0.0236 2.1256 28 1 1.7736 -5.3740 4.4608 29 1 1.6921 -8.0425 4.0935 30 1 0.1290 -7.4906 4.7418 31 1 -1.6752 -12.5000 2.2192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318000111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:47 Heat of formation + Delta-G solvation = -52.718909 kcal Electronic energy + Delta-G solvation = -21167.615025 eV Core-core repulsion = 17443.755154 eV Total energy + Delta-G solvation = -3723.859872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.001 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58544 -40.36542 -38.39252 -37.38374 -37.17112 -35.82528 -34.56677 -31.92070 -30.47318 -30.19524 -27.67750 -26.05061 -24.04056 -21.98289 -21.19130 -20.24749 -19.92634 -19.09282 -18.60755 -17.75758 -17.57900 -17.27205 -17.10462 -16.86031 -16.47941 -16.12900 -16.02889 -15.09551 -14.55230 -14.52504 -14.38003 -14.13687 -14.04889 -13.74055 -13.48122 -13.36466 -13.26233 -13.15571 -12.87573 -12.62189 -12.24255 -11.93672 -11.82444 -11.74392 -11.65626 -11.12497 -10.96297 -10.39479 -10.26790 -9.97726 -8.66888 -8.33145 -6.11720 -1.27343 -0.71511 -0.44159 -0.28030 0.89020 0.99475 1.26758 1.45006 1.45786 1.56967 1.58784 1.83602 2.27525 2.56624 2.66117 3.01957 3.04972 3.19162 3.47137 3.93654 3.97233 4.04156 4.28157 4.35521 4.48764 4.82005 4.88261 5.31887 5.44866 5.86825 6.21929 6.68569 6.97988 7.08771 8.75894 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.038057 B = 0.002127 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.568685 B =13162.351968 C =13685.556664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.612 3.388 3 O -0.960 6.960 4 O -0.972 6.972 5 N -0.985 5.985 6 C 0.275 3.725 7 N -0.345 5.345 8 N -0.306 5.306 9 C 0.258 3.742 10 N -0.608 5.608 11 C 0.530 3.470 12 O -0.497 6.497 13 C -0.122 4.122 14 S -0.153 6.153 15 C -0.542 4.542 16 H 0.090 0.910 17 C 0.011 3.989 18 N -0.913 5.913 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.255 1.255 23 S 0.195 5.805 24 H 0.164 0.836 25 H 0.158 0.842 26 H 0.128 0.872 27 H 0.457 0.543 28 H 0.449 0.551 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 27.077 8.547 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.707 3.293 3 O -0.950 6.950 4 O -0.962 6.962 5 N -0.741 5.741 6 C -0.108 4.108 7 N -0.179 5.179 8 N -0.139 5.139 9 C -0.123 4.123 10 N -0.265 5.265 11 C 0.314 3.686 12 O -0.366 6.366 13 C -0.273 4.273 14 S 0.074 5.926 15 C -0.689 4.689 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.179 1.179 23 S 0.426 5.574 24 H 0.182 0.818 25 H 0.176 0.824 26 H 0.147 0.853 27 H 0.299 0.701 28 H 0.293 0.707 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.525 27.074 5.376 28.610 hybrid contribution 0.137 -1.021 2.270 2.493 sum 7.662 26.053 7.646 28.212 Atomic orbital electron populations 1.30255 1.21885 1.13171 1.14666 1.05054 0.79657 0.72616 0.71962 1.93643 1.79779 1.36934 1.84669 1.93649 1.79029 1.62121 1.61400 1.53095 1.69705 1.13145 1.38111 1.25602 0.98524 0.91305 0.95392 1.75437 1.20487 0.96254 1.25695 1.75732 1.22223 1.08060 1.07899 1.26233 0.99096 0.93609 0.93352 1.42970 1.58171 1.06482 1.18916 1.20727 0.76612 0.84269 0.86947 1.90881 1.43631 1.82242 1.19826 1.23345 1.07263 0.93796 1.02919 1.85828 1.75047 1.07402 1.24282 1.23207 1.44332 0.98490 1.02915 0.89156 1.26142 0.93918 1.01462 0.97807 1.70191 1.36673 1.26462 1.21631 0.84943 0.79362 0.76088 0.77530 1.19368 1.20805 1.17852 1.85163 1.60217 1.00554 1.11458 0.81798 0.82410 0.85313 0.70140 0.70740 0.85492 0.85285 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.05 10.77 113.37 1.22 -4.83 16 2 S 2.61 39.95 5.83 -56.49 -0.33 39.62 16 3 O -0.96 -17.09 18.08 -127.65 -2.31 -19.39 16 4 O -0.97 -25.97 17.25 -127.65 -2.20 -28.17 16 5 N -0.99 -11.40 5.76 -56.39 -0.32 -11.72 16 6 C 0.28 5.10 8.10 179.23 1.45 6.55 16 7 N -0.34 -9.87 10.22 -56.31 -0.58 -10.44 16 8 N -0.31 -10.35 10.22 -56.14 -0.57 -10.92 16 9 C 0.26 6.33 8.34 179.14 1.49 7.83 16 10 N -0.61 -13.48 5.41 -309.61 -1.68 -15.15 16 11 C 0.53 17.95 7.81 87.66 0.68 18.64 16 12 O -0.50 -22.76 14.53 -3.08 -0.04 -22.80 16 13 C -0.12 -4.18 6.16 71.24 0.44 -3.74 16 14 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 15 C -0.54 -29.28 9.50 67.95 0.65 -28.63 16 16 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.63 5.49 84.86 0.47 1.09 16 18 N -0.91 -55.16 13.22 21.65 0.29 -54.88 16 19 Si 1.00 42.11 29.55 68.60 2.03 44.14 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 23 S 0.19 2.48 23.39 -56.49 -1.32 1.16 16 24 H 0.16 0.43 8.14 -2.39 -0.02 0.42 16 25 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.13 1.81 7.36 -2.39 -0.02 1.79 16 27 H 0.46 1.50 8.91 -96.75 -0.86 0.64 16 28 H 0.45 4.94 8.82 -92.71 -0.82 4.12 16 29 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 30 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -95.09 325.32 -2.25 -97.34 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -0.45 Total: 3.52 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.40 Total: -3.09 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -2.86 Total: -103.11 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -4.55 Total: -70.36 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 34.38 SS G_CDS: -2.81 Total: 31.57 kcal Total: -95.09 -2.25 -97.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318000111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.617 kcal (2) G-P(sol) polarization free energy of solvation -95.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds