Wall clock time and date at job start Tue Mar 31 2020 20:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21615 * 119.99847 * 179.86319 * 13 12 11 15 15 C 1.47192 * 119.99938 * 359.86702 * 13 12 11 16 16 C 1.33803 * 124.65466 * 179.72618 * 15 13 12 17 17 C 1.40098 * 115.49558 * 179.78528 * 16 15 13 18 18 C 1.41787 * 129.96912 * 180.20881 * 17 16 15 19 19 C 1.35986 * 119.36565 * 180.35175 * 18 17 16 20 20 N 1.32346 * 121.59677 * 359.93038 * 19 18 17 21 21 C 1.31437 * 122.03396 * 0.03089 * 20 19 18 22 22 Cl 1.73605 * 119.71440 * 179.97438 * 21 20 19 23 23 C 1.39889 * 120.57227 * 0.02562 * 21 20 19 24 24 S 1.75540 * 124.65792 * 0.02562 * 15 13 12 25 25 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 28 28 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 29 29 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 30 30 H 1.07997 * 122.25068 * 359.97438 * 16 15 13 31 31 H 1.08003 * 120.31526 * 0.28131 * 18 17 16 32 32 H 1.08001 * 119.19448 * 179.97438 * 19 18 17 33 33 H 1.09004 * 113.77444 * 221.15143 * 25 12 11 34 34 H 1.09004 * 113.87147 * 89.76886 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3863 -6.4955 0.9222 15 6 -0.1971 -5.7118 2.4434 16 6 -0.6188 -6.8988 2.8944 17 6 -1.6159 -6.8509 3.8774 18 6 -2.2719 -7.9055 4.5615 19 6 -3.2265 -7.6099 5.4838 20 7 -3.5591 -6.3593 5.7612 21 6 -2.9886 -5.3372 5.1634 22 17 -3.4720 -3.7210 5.5735 23 6 -1.9961 -5.5404 4.1987 24 16 -1.0593 -4.4049 3.2373 25 6 2.1610 -3.7398 0.0582 26 1 -0.4850 0.8400 0.0004 27 1 -0.3471 -1.8018 -1.0246 28 1 1.3268 -2.4870 2.2200 29 1 -0.3218 -2.8255 1.5318 30 1 -0.2154 -7.8311 2.5276 31 1 -2.0167 -8.9336 4.3512 32 1 -3.7247 -8.4153 6.0029 33 1 2.2032 -4.2939 -0.8796 34 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330670128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:45 Heat of formation + Delta-G solvation = 6.432896 kcal Electronic energy + Delta-G solvation = -23663.560057 eV Core-core repulsion = 19908.317886 eV Total energy + Delta-G solvation = -3755.242171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71028 -39.73582 -37.79688 -36.95687 -35.99945 -34.11032 -32.32401 -31.52655 -30.87475 -28.84749 -26.02750 -25.54353 -24.75603 -23.97989 -21.67451 -20.22421 -19.24889 -18.04560 -17.42444 -16.98215 -16.78778 -16.41987 -15.55213 -15.27099 -15.10125 -14.78350 -14.69625 -14.43154 -14.21423 -13.61802 -13.27156 -12.81815 -12.69084 -12.46528 -12.21456 -12.11543 -11.83010 -11.68312 -11.55157 -11.35446 -11.15284 -10.82886 -10.57302 -10.41216 -10.09852 -9.96543 -9.93587 -9.44408 -9.29151 -8.87173 -8.60120 -8.13058 -8.00244 -6.48425 -4.59344 -0.02858 0.58434 1.17000 1.47883 1.72871 1.76662 3.09126 3.13586 3.19952 3.22448 3.24815 3.44231 4.11905 4.23125 4.26409 4.44823 4.67951 4.70773 4.79731 5.06961 5.20727 5.40411 5.50146 5.69294 5.79191 5.91456 5.99511 6.09462 6.18484 6.29974 6.39919 6.48220 6.94048 7.38472 7.54152 7.69290 8.12807 8.38123 8.44859 9.12150 9.30318 10.58652 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.003690 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.866345 B = 7585.986030 C = 9131.072661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.245 3.755 10 O -0.571 6.571 11 C 0.067 3.933 12 N -0.625 5.625 13 C 0.594 3.406 14 O -0.544 6.544 15 C -0.181 4.181 16 C -0.074 4.074 17 C -0.029 4.029 18 C -0.119 4.119 19 C 0.090 3.910 20 N -0.465 5.465 21 C 0.231 3.769 22 Cl -0.018 7.018 23 C -0.214 4.214 24 S 0.224 5.776 25 C 0.116 3.884 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.076 0.924 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 -9.383 9.995 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.203 3.797 10 O -0.383 6.383 11 C -0.057 4.057 12 N -0.357 5.357 13 C 0.381 3.619 14 O -0.425 6.425 15 C -0.302 4.302 16 C -0.107 4.107 17 C -0.045 4.045 18 C -0.141 4.141 19 C -0.060 4.060 20 N -0.177 5.177 21 C 0.053 3.947 22 Cl 0.011 6.989 23 C -0.334 4.334 24 S 0.492 5.508 25 C -0.005 4.005 26 H 0.084 0.916 27 H 0.248 0.752 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.095 0.905 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.446 -8.675 10.179 14.441 hybrid contribution 0.472 -0.155 -0.101 0.507 sum -4.974 -8.830 10.078 14.293 Atomic orbital electron populations 1.69396 1.06177 1.28315 1.49625 1.25068 0.95036 0.99948 0.92869 0.86275 0.80108 0.82199 0.77957 1.19389 1.20572 1.20596 1.21496 0.94027 0.89662 1.52561 0.90776 1.19794 0.85590 0.91386 0.82979 1.86072 1.47049 1.49870 1.55269 1.24665 1.00069 0.77167 1.03763 1.50197 1.40001 1.04326 1.41175 1.16654 0.81694 0.82692 0.80861 1.90768 1.55819 1.39101 1.56770 1.24306 1.03894 0.97932 1.04089 1.20039 0.95769 0.99161 0.95691 1.18288 0.97048 0.91995 0.97216 1.21841 0.96424 0.99528 0.96287 1.21994 0.95648 0.92163 0.96161 1.67016 1.26168 0.99264 1.25241 1.20895 0.92251 0.88930 0.92610 1.98434 1.91083 1.16473 1.92909 1.24125 1.04520 1.00165 1.04544 1.85132 1.30544 1.03539 1.31558 1.23549 0.93255 0.92578 0.91093 0.91554 0.75161 0.89063 0.90620 0.82104 0.83415 0.81447 0.90543 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.61 11.21 55.43 0.62 -20.99 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 18.68 29.54 -169.99 -5.02 13.66 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -12.79 8.61 -34.44 -0.30 -13.09 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.52 1.40 -90.85 -0.13 5.40 16 10 O -0.57 -13.93 13.49 -35.23 -0.48 -14.41 16 11 C 0.07 1.35 6.67 -2.84 -0.02 1.33 16 12 N -0.62 -12.60 3.61 -179.48 -0.65 -13.25 16 13 C 0.59 11.74 8.03 -12.62 -0.10 11.63 16 14 O -0.54 -11.88 17.46 5.26 0.09 -11.79 16 15 C -0.18 -3.00 6.32 -37.50 -0.24 -3.24 16 16 C -0.07 -1.05 9.81 -40.44 -0.40 -1.45 16 17 C -0.03 -0.37 5.91 -107.11 -0.63 -1.01 16 18 C -0.12 -1.16 10.13 -39.03 -0.40 -1.56 16 19 C 0.09 0.88 11.06 -18.14 -0.20 0.68 16 20 N -0.46 -5.93 10.32 -10.52 -0.11 -6.04 16 21 C 0.23 3.17 7.32 -17.10 -0.13 3.04 16 22 Cl -0.02 -0.23 28.94 -51.86 -1.50 -1.73 16 23 C -0.21 -3.03 6.39 -38.23 -0.24 -3.27 16 24 S 0.22 3.43 19.61 -107.50 -2.11 1.32 16 25 C 0.12 2.38 8.23 -2.97 -0.02 2.35 16 26 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 27 H 0.39 9.70 6.61 45.56 0.30 10.00 16 28 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 29 H 0.08 1.54 6.38 -51.92 -0.33 1.20 16 30 H 0.16 2.04 7.96 -52.49 -0.42 1.63 16 31 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -27.50 328.27 -9.20 -36.70 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -2.10 Total: 9.09 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.90 Total: 2.49 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.14 Total: -40.28 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.38 Total: -26.20 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.11 Total: 1.32 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.50 Total: -1.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.50 -9.20 -36.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.129 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds