Wall clock time and date at job start Tue Mar 31 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21615 * 119.99847 * 179.86319 * 13 12 11 15 15 C 1.47192 * 119.99938 * 359.86702 * 13 12 11 16 16 C 1.33803 * 124.65466 * 179.72618 * 15 13 12 17 17 C 1.40098 * 115.49558 * 179.78528 * 16 15 13 18 18 C 1.41787 * 129.96912 * 180.20881 * 17 16 15 19 19 C 1.35986 * 119.36565 * 180.35175 * 18 17 16 20 20 N 1.32346 * 121.59677 * 359.93038 * 19 18 17 21 21 C 1.31437 * 122.03396 * 0.03089 * 20 19 18 22 22 Cl 1.73605 * 119.71440 * 179.97438 * 21 20 19 23 23 C 1.39889 * 120.57227 * 0.02562 * 21 20 19 24 24 S 1.75540 * 124.65792 * 0.02562 * 15 13 12 25 25 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 28 28 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 29 29 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 30 30 H 1.07997 * 122.25068 * 359.97438 * 16 15 13 31 31 H 1.08003 * 120.31526 * 0.28131 * 18 17 16 32 32 H 1.08001 * 119.19448 * 179.97438 * 19 18 17 33 33 H 1.09004 * 113.77444 * 221.15143 * 25 12 11 34 34 H 1.09004 * 113.87147 * 89.76886 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3863 -6.4955 0.9222 15 6 -0.1971 -5.7118 2.4434 16 6 -0.6188 -6.8988 2.8944 17 6 -1.6159 -6.8509 3.8774 18 6 -2.2719 -7.9055 4.5615 19 6 -3.2265 -7.6099 5.4838 20 7 -3.5591 -6.3593 5.7612 21 6 -2.9886 -5.3372 5.1634 22 17 -3.4720 -3.7210 5.5735 23 6 -1.9961 -5.5404 4.1987 24 16 -1.0593 -4.4049 3.2373 25 6 2.1610 -3.7398 0.0582 26 1 -0.4850 0.8400 0.0004 27 1 -0.3471 -1.8018 -1.0246 28 1 1.3268 -2.4870 2.2200 29 1 -0.3218 -2.8255 1.5318 30 1 -0.2154 -7.8311 2.5276 31 1 -2.0167 -8.9336 4.3512 32 1 -3.7247 -8.4153 6.0029 33 1 2.2032 -4.2939 -0.8796 34 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330670128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:43 Heat of formation + Delta-G solvation = -11.627462 kcal Electronic energy + Delta-G solvation = -23664.343213 eV Core-core repulsion = 19908.317886 eV Total energy + Delta-G solvation = -3756.025327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.71541 -41.29040 -39.34158 -37.98053 -37.11610 -35.89228 -34.16919 -32.44570 -32.05356 -30.39573 -27.62013 -27.18838 -25.92945 -25.04776 -22.88265 -21.66287 -20.64094 -19.59884 -18.98082 -18.09155 -18.04356 -17.60424 -17.13242 -16.70239 -16.54865 -16.00037 -15.94673 -15.65435 -15.42760 -15.11980 -14.54981 -14.48440 -14.14266 -13.88279 -13.53230 -13.43998 -13.19853 -12.99399 -12.80666 -12.80232 -12.52161 -12.26528 -12.24635 -11.98485 -11.60289 -11.14653 -11.01995 -10.91333 -10.68013 -10.44448 -10.32196 -9.73342 -9.09625 -8.28000 -6.44945 -1.11363 -0.33876 0.04212 0.46264 0.65135 0.68201 1.45873 1.51063 1.60373 1.66501 1.88318 2.40397 2.44169 2.92817 3.06262 3.34086 3.44755 3.58360 3.69402 3.81168 4.05699 4.14825 4.32887 4.41075 4.47564 4.52725 4.65934 4.72988 4.79662 4.87779 4.95271 5.17682 5.31192 5.71853 5.88869 6.48675 6.56168 6.61601 6.82977 7.28288 7.40542 8.78534 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.003690 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.866345 B = 7585.986030 C = 9131.072661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.036 3.964 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.224 3.776 10 O -0.584 6.584 11 C 0.082 3.918 12 N -0.629 5.629 13 C 0.593 3.407 14 O -0.572 6.572 15 C -0.216 4.216 16 C -0.044 4.044 17 C -0.045 4.045 18 C -0.095 4.095 19 C 0.093 3.907 20 N -0.472 5.472 21 C 0.211 3.789 22 Cl -0.023 7.023 23 C -0.214 4.214 24 S 0.193 5.807 25 C 0.117 3.883 26 H 0.276 0.724 27 H 0.389 0.611 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.178 0.822 31 H 0.192 0.808 32 H 0.213 0.787 33 H 0.069 0.931 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 -11.209 11.595 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.183 3.817 10 O -0.396 6.396 11 C -0.041 4.041 12 N -0.361 5.361 13 C 0.382 3.618 14 O -0.455 6.455 15 C -0.337 4.337 16 C -0.077 4.077 17 C -0.060 4.060 18 C -0.116 4.116 19 C -0.057 4.057 20 N -0.184 5.184 21 C 0.033 3.967 22 Cl 0.005 6.995 23 C -0.334 4.334 24 S 0.461 5.539 25 C -0.004 4.004 26 H 0.086 0.914 27 H 0.243 0.757 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.195 0.805 31 H 0.209 0.791 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.976 -10.490 11.782 16.869 hybrid contribution 0.521 0.214 -0.504 0.755 sum -5.455 -10.276 11.278 16.203 Atomic orbital electron populations 1.69463 1.07085 1.28951 1.49929 1.25710 0.95716 1.02499 0.92588 0.85373 0.79085 0.78770 0.77614 1.19040 1.20862 1.20364 1.21723 0.94279 0.90442 1.52895 0.90605 1.20062 0.85823 0.92066 0.83752 1.86056 1.47474 1.49678 1.56370 1.24407 0.99996 0.77145 1.02537 1.50168 1.40041 1.04629 1.41216 1.17021 0.81853 0.81926 0.80966 1.90733 1.57087 1.39583 1.58104 1.23953 1.05082 0.99271 1.05345 1.20295 0.94378 0.98833 0.94204 1.18516 0.97372 0.92521 0.97625 1.22356 0.94454 1.00655 0.94156 1.22822 0.95200 0.91948 0.95734 1.67096 1.26027 1.00233 1.25024 1.20918 0.93011 0.89291 0.93432 1.98426 1.91110 1.16982 1.92939 1.24112 1.04534 1.00223 1.04509 1.85092 1.31747 1.04291 1.32807 1.23556 0.93938 0.91612 0.91297 0.91408 0.75719 0.88400 0.90966 0.80502 0.79052 0.77007 0.91267 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.70 11.21 21.45 0.24 -44.46 16 2 C 0.04 1.71 5.40 84.65 0.46 2.17 16 3 Si 0.97 38.26 29.54 68.60 2.03 40.28 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.56 -26.57 8.61 25.60 0.22 -26.35 16 8 H 0.08 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 10.35 1.40 -10.88 -0.02 10.33 16 10 O -0.58 -29.39 13.49 -148.98 -2.01 -31.40 16 11 C 0.08 3.41 6.67 86.44 0.58 3.99 16 12 N -0.63 -25.82 3.61 -843.84 -3.05 -28.87 16 13 C 0.59 23.70 8.03 86.59 0.70 24.40 16 14 O -0.57 -25.14 17.46 -4.08 -0.07 -25.22 16 15 C -0.22 -7.14 6.32 23.62 0.15 -6.99 16 16 C -0.04 -1.17 9.81 21.71 0.21 -0.96 16 17 C -0.04 -1.03 5.91 -21.48 -0.13 -1.16 16 18 C -0.09 -1.39 10.13 22.62 0.23 -1.16 16 19 C 0.09 1.38 11.06 84.09 0.93 2.31 16 20 N -0.47 -10.68 10.32 -187.21 -1.93 -12.61 16 21 C 0.21 5.48 7.32 85.15 0.62 6.10 16 22 Cl -0.02 -0.59 28.94 -2.72 -0.08 -0.67 16 23 C -0.21 -5.81 6.39 23.14 0.15 -5.66 16 24 S 0.19 5.98 19.61 -56.49 -1.11 4.88 16 25 C 0.12 4.87 8.23 86.49 0.71 5.59 16 26 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 27 H 0.39 19.84 6.61 -74.06 -0.49 19.35 16 28 H 0.10 3.86 8.09 -2.39 -0.02 3.84 16 29 H 0.07 3.04 6.38 -2.38 -0.02 3.02 16 30 H 0.18 4.03 7.96 -2.91 -0.02 4.01 16 31 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.21 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.11 4.11 8.09 -2.39 -0.02 4.09 16 Total: -1.00 -60.17 328.27 -0.47 -60.64 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.69 Total: 24.82 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 4.81 Total: 12.60 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -4.74 Total: -85.93 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.08 Total: -56.62 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.11 Total: 4.88 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -60.17 -0.47 -60.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.012 kcal (2) G-P(sol) polarization free energy of solvation -60.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds