Wall clock time and date at job start Tue Mar 31 2020 20:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48502 * 109.46959 * 270.00242 * 3 2 1 5 5 H 1.48501 * 109.46856 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47367 * 150.00192 * 3 2 1 7 7 C 1.37879 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00148 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.28505 * 46.92797 * 9 7 2 11 11 C 1.53499 * 114.20777 * 179.97438 * 9 7 2 12 12 N 1.47064 * 87.98449 * 139.64892 * 11 9 7 13 13 C 1.34780 * 136.05272 * 152.83648 * 12 11 9 14 14 O 1.21656 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.46982 * 119.99814 * 180.02562 * 13 12 11 16 16 C 1.33753 * 124.63953 * 180.02562 * 15 13 12 17 17 C 1.40215 * 115.55633 * 179.74914 * 16 15 13 18 18 C 1.40355 * 112.51866 * 0.25548 * 17 16 15 19 19 C 1.40023 * 118.81309 * 179.97438 * 18 17 16 20 20 C 1.36419 * 119.29693 * 359.97438 * 19 18 17 21 21 N 1.32369 * 121.16983 * 359.97438 * 20 19 18 22 22 C 1.31187 * 122.47198 * 0.02562 * 21 20 19 23 23 Cl 1.73593 * 119.69580 * 180.02562 * 22 21 20 24 24 S 1.75540 * 124.64205 * 0.14890 * 15 13 12 25 25 C 1.47060 * 87.88704 * 333.10557 * 12 11 9 26 26 H 0.96998 * 120.00124 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00227 * 313.06984 * 10 9 7 28 28 H 1.09002 * 113.46627 * 24.87043 * 11 9 7 29 29 H 1.08996 * 113.52171 * 254.44461 * 11 9 7 30 30 H 1.08002 * 122.22379 * 0.02891 * 16 15 13 31 31 H 1.07994 * 120.35478 * 179.97438 * 19 18 17 32 32 H 1.08003 * 119.41395 * 180.02562 * 20 19 18 33 33 H 1.09003 * 113.47159 * 141.67897 * 25 12 11 34 34 H 1.09003 * 113.46560 * 272.10967 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1926 -2.5404 -0.9587 11 6 2.1486 -3.7443 0.0005 12 7 1.2098 -4.3574 0.9521 13 6 0.8344 -5.6113 1.2736 14 8 1.3299 -6.5613 0.6973 15 6 -0.1737 -5.8310 2.3203 16 6 -0.6130 -7.0319 2.7127 17 6 -1.5752 -7.0204 3.7326 18 6 -1.9017 -5.7204 4.1489 19 6 -2.8522 -5.5555 5.1639 20 6 -3.4340 -6.6575 5.7189 21 7 -3.1161 -7.8772 5.3145 22 6 -2.2341 -8.0982 4.3689 23 17 -1.8723 -9.7283 3.8942 24 16 -0.9682 -4.5532 3.2245 25 6 0.8560 -3.0000 1.3938 26 1 -0.4850 0.8400 0.0004 27 1 -0.3711 -1.7547 -0.9565 28 1 3.1383 -3.5659 0.4210 29 1 2.1856 -4.2539 -0.9623 30 1 -0.2475 -7.9496 2.2763 31 1 -3.1218 -4.5666 5.5037 32 1 -4.1676 -6.5326 6.5016 33 1 -0.2047 -2.8775 1.6131 34 1 1.4978 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331130525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:49 Heat of formation + Delta-G solvation = -7.910189 kcal Electronic energy + Delta-G solvation = -23580.623743 eV Core-core repulsion = 19824.759609 eV Total energy + Delta-G solvation = -3755.864134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75125 -41.39101 -39.40717 -37.85915 -37.18067 -35.97664 -34.13758 -33.08848 -31.72802 -30.27922 -27.56026 -27.03533 -25.98951 -25.10473 -22.98339 -21.62916 -20.62561 -19.64462 -19.07365 -18.56974 -17.94998 -17.20756 -16.80288 -16.73946 -16.63689 -16.19446 -15.99582 -15.93397 -15.41770 -15.08541 -14.62206 -14.37169 -14.13183 -13.86630 -13.54464 -13.42124 -13.22757 -12.94444 -12.82852 -12.78970 -12.53885 -12.27629 -12.21866 -12.08129 -11.63457 -11.15870 -11.13766 -10.90216 -10.68393 -10.31323 -10.20779 -9.75497 -9.12218 -8.28505 -6.45510 -1.13373 -0.29907 0.05133 0.39273 0.57642 0.69867 1.48665 1.52436 1.60782 1.67262 1.87412 2.39918 2.41153 2.91297 3.04392 3.34824 3.42480 3.54782 3.69185 3.80408 4.02429 4.28219 4.31123 4.33486 4.50151 4.55071 4.56677 4.69046 4.79606 4.81118 4.87940 5.18360 5.25734 5.72399 5.87434 6.49359 6.58133 6.62252 6.83721 7.28191 7.46406 8.78122 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.003099 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.206947 B = 9033.252847 C =10036.134337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.225 3.775 10 O -0.586 6.586 11 C 0.110 3.890 12 N -0.632 5.632 13 C 0.600 3.400 14 O -0.576 6.576 15 C -0.231 4.231 16 C -0.033 4.033 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.120 4.120 20 C 0.128 3.872 21 N -0.493 5.493 22 C 0.232 3.768 23 Cl -0.017 7.017 24 S 0.210 5.790 25 C 0.077 3.923 26 H 0.278 0.722 27 H 0.391 0.609 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.217 0.783 33 H 0.070 0.930 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 -7.070 13.257 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.166 4.166 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.096 0.904 9 C 0.183 3.817 10 O -0.399 6.399 11 C -0.012 4.012 12 N -0.363 5.363 13 C 0.389 3.611 14 O -0.460 6.460 15 C -0.350 4.350 16 C -0.066 4.066 17 C -0.151 4.151 18 C -0.242 4.242 19 C -0.144 4.144 20 C -0.023 4.023 21 N -0.205 5.205 22 C 0.056 3.944 23 Cl 0.012 6.988 24 S 0.478 5.522 25 C -0.046 4.046 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.202 0.798 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.700 -7.385 13.192 16.537 hybrid contribution 0.555 0.126 -0.700 0.902 sum -6.145 -7.259 12.492 15.701 Atomic orbital electron populations 1.69309 1.07135 1.29104 1.50010 1.25741 0.95748 1.02611 0.92460 0.85362 0.78777 0.78222 0.78131 1.20613 1.20579 1.18901 1.21628 0.94312 0.90162 1.52909 0.90402 1.19708 0.85475 0.91830 0.84666 1.86045 1.45728 1.48334 1.59771 1.23455 0.94602 0.91030 0.92082 1.49624 1.42161 1.04527 1.40037 1.16819 0.81391 0.81211 0.81630 1.90747 1.58578 1.41311 1.55316 1.23630 1.06598 0.99014 1.05734 1.20102 0.93891 0.98371 0.94242 1.18535 1.02063 0.93393 1.01068 1.23945 1.02125 0.96682 1.01466 1.21753 0.94725 1.03645 0.94315 1.23009 0.97211 0.84217 0.97831 1.66861 1.13831 1.27615 1.12164 1.21735 0.93260 0.86499 0.92925 1.98421 1.92596 1.18152 1.89652 1.84777 1.34565 1.03482 1.29397 1.24245 1.00684 0.77185 1.02464 0.91210 0.75302 0.87022 0.92136 0.82463 0.79828 0.76621 0.91193 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.73 11.01 21.45 0.24 -43.49 16 2 C 0.04 1.64 5.39 84.66 0.46 2.10 16 3 Si 0.97 37.27 29.54 68.60 2.03 39.29 16 4 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.55 -25.98 8.69 25.60 0.22 -25.75 16 8 H 0.08 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.22 10.30 1.57 -11.29 -0.02 10.28 16 10 O -0.59 -29.60 13.54 -148.98 -2.02 -31.61 16 11 C 0.11 4.62 8.04 83.18 0.67 5.29 16 12 N -0.63 -26.14 3.69 -863.75 -3.19 -29.33 16 13 C 0.60 24.86 8.04 86.53 0.70 25.55 16 14 O -0.58 -26.83 17.50 -4.21 -0.07 -26.90 16 15 C -0.23 -7.91 6.32 23.54 0.15 -7.77 16 16 C -0.03 -1.00 9.44 21.73 0.21 -0.79 16 17 C -0.14 -3.71 5.87 -21.49 -0.13 -3.83 16 18 C -0.12 -2.84 6.56 23.22 0.15 -2.69 16 19 C -0.12 -1.92 10.09 22.28 0.22 -1.70 16 20 C 0.13 1.89 11.11 84.19 0.94 2.83 16 21 N -0.49 -10.68 10.28 -185.79 -1.91 -12.59 16 22 C 0.23 5.71 7.36 85.58 0.63 6.34 16 23 Cl -0.02 -0.39 28.74 -2.72 -0.08 -0.47 16 24 S 0.21 5.87 19.94 -56.49 -1.13 4.75 16 25 C 0.08 3.12 6.59 83.09 0.55 3.67 16 26 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 27 H 0.39 19.94 6.33 -74.06 -0.47 19.47 16 28 H 0.11 4.14 8.10 -2.39 -0.02 4.12 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.16 4.78 7.85 -2.91 -0.02 4.76 16 31 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.22 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.07 2.80 6.33 -2.39 -0.02 2.79 16 34 H 0.10 3.82 8.10 -2.39 -0.02 3.80 16 Total: -1.00 -59.75 327.70 -0.67 -60.42 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.72 Total: 26.40 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.74 Total: 13.54 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -4.86 Total: -85.41 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -2.09 Total: -58.52 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.13 Total: 4.75 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -59.75 -0.67 -60.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331130525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.510 kcal (2) G-P(sol) polarization free energy of solvation -59.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds