Wall clock time and date at job start Tue Mar 31 2020 21:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86802 * 119.99481 * 2 1 4 4 H 1.48498 * 109.47064 * 269.99176 * 3 2 1 5 5 H 1.48494 * 109.47360 * 29.99763 * 3 2 1 6 6 H 1.48504 * 109.46765 * 149.99778 * 3 2 1 7 7 C 1.38790 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00705 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99772 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00067 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47017 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00113 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00061 * 180.02562 * 11 10 9 14 14 C 1.39840 * 119.99939 * 180.02562 * 13 11 10 15 15 N 1.31255 * 125.47759 * 359.96935 * 14 13 11 16 16 N 1.40426 * 106.95467 * 180.02562 * 15 14 13 17 17 H 0.97001 * 126.80922 * 179.97438 * 16 15 14 18 18 C 1.35211 * 106.37238 * 0.02562 * 16 15 14 19 19 C 1.47929 * 126.04514 * 179.97438 * 18 16 15 20 20 C 1.39531 * 120.14530 * 359.75031 * 19 18 16 21 21 C 1.37946 * 119.86968 * 179.67054 * 20 19 18 22 22 C 1.38387 * 120.17144 * 0.63081 * 21 20 19 23 23 C 1.38283 * 120.29397 * 359.66926 * 22 21 20 24 24 C 1.38147 * 120.12384 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 120.08087 * 179.97438 * 24 23 22 26 26 N 1.31800 * 107.91411 * 0.02562 * 18 16 15 27 27 H 0.96994 * 120.00308 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47111 * 59.99989 * 10 9 7 29 29 H 1.09007 * 109.46659 * 300.00301 * 10 9 7 30 30 H 0.96999 * 119.99843 * 359.97438 * 13 11 10 31 31 H 1.08001 * 120.06093 * 0.02562 * 20 19 18 32 32 H 1.08009 * 119.91427 * 180.29912 * 21 20 19 33 33 H 1.08001 * 119.84967 * 179.69460 * 22 21 20 34 34 H 1.07992 * 119.93730 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9844 0.0009 11 6 5.5732 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0459 -4.4945 0.0016 14 6 7.4253 -4.7245 0.0032 15 7 8.3525 -3.7955 0.0047 16 7 9.5925 -4.4545 0.0054 17 1 10.4702 -4.0415 0.0061 18 6 9.3202 -5.7789 0.0036 19 6 10.3165 -6.8724 0.0030 20 6 11.6803 -6.5777 -0.0009 21 6 12.6045 -7.6018 0.0054 22 6 12.1823 -8.9197 0.0025 23 6 10.8324 -9.2197 0.0002 24 6 9.8964 -8.2037 0.0001 25 17 8.2020 -8.5816 -0.0035 26 7 8.0102 -5.9235 0.0014 27 1 -0.4850 0.8400 -0.0004 28 1 3.6442 -3.4313 -0.8893 29 1 3.6434 -3.4316 0.8907 30 1 5.4293 -5.2433 0.0009 31 1 12.0117 -5.5498 -0.0032 32 1 13.6604 -7.3745 0.0072 33 1 12.9104 -9.7174 0.0025 34 1 10.5093 -10.2501 -0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338210206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:43 Heat of formation + Delta-G solvation = 67.337928 kcal Electronic energy + Delta-G solvation = -22439.813659 eV Core-core repulsion = 18719.505279 eV Total energy + Delta-G solvation = -3720.308380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32966 -40.87301 -40.06372 -37.27254 -36.24925 -34.67390 -33.63432 -33.43996 -31.76673 -31.22928 -30.05750 -27.86802 -25.38791 -24.18038 -23.44798 -21.98444 -21.41589 -20.09772 -19.58848 -18.27379 -18.02614 -17.36167 -17.29383 -17.09301 -16.64303 -16.29752 -16.18121 -15.88137 -15.15462 -15.01439 -14.86197 -14.73907 -14.56201 -13.91870 -13.38262 -13.32681 -13.03445 -12.84243 -12.72731 -12.57560 -12.41415 -12.34275 -11.89151 -11.84692 -11.38875 -11.31276 -11.17534 -10.83868 -10.56837 -10.30411 -9.85920 -9.53459 -9.01891 -8.51606 -6.23184 -0.48113 0.18856 0.66900 0.78332 1.20318 1.24555 1.25978 1.31222 1.47642 1.55844 1.83021 2.00581 2.24223 2.62785 2.66964 2.86547 2.98932 3.30677 3.62204 3.80399 4.06348 4.16937 4.27054 4.31913 4.33545 4.42301 4.48858 4.79289 4.95661 5.12180 5.24249 5.37893 5.38733 5.70820 5.72864 5.79463 6.10672 6.12528 6.79580 6.93292 7.02313 8.60547 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.033397 B = 0.002159 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.198133 B =12968.806083 C =13791.857390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.067 0.933 9 S -0.169 6.169 10 C -0.104 4.104 11 C 0.537 3.463 12 O -0.508 6.508 13 N -0.612 5.612 14 C 0.433 3.567 15 N -0.322 5.322 16 N -0.462 5.462 17 H 0.457 0.543 18 C 0.341 3.659 19 C -0.054 4.054 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.075 4.075 23 C -0.119 4.119 24 C -0.013 4.013 25 Cl -0.048 7.048 26 N -0.533 5.533 27 H 0.277 0.723 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.440 0.560 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.460 -23.061 0.102 38.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.085 0.915 9 S 0.058 5.942 10 C -0.254 4.254 11 C 0.322 3.678 12 O -0.378 6.378 13 N -0.268 5.268 14 C 0.062 3.938 15 N -0.159 5.159 16 N -0.185 5.185 17 H 0.306 0.694 18 C 0.066 3.934 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.138 4.138 24 C -0.042 4.042 25 Cl -0.018 7.018 26 N -0.267 5.267 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.281 0.719 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 30.868 -20.898 0.105 37.277 hybrid contribution -1.413 -0.417 -0.043 1.474 sum 29.455 -21.315 0.062 36.359 Atomic orbital electron populations 1.70011 1.07216 1.29013 1.49037 1.25533 0.95272 1.02185 0.92954 0.85894 0.80677 0.79779 0.80192 1.18727 1.18319 1.16130 1.22439 0.89936 0.96884 1.58284 0.91488 1.84786 1.06804 1.05008 1.97636 1.23181 0.92960 1.00602 1.08688 1.20373 0.90575 0.81669 0.75139 1.90799 1.58781 1.42489 1.45773 1.42489 1.01343 1.09738 1.73217 1.20606 0.87168 0.87663 0.98313 1.78766 0.89379 1.16945 1.30851 1.47896 1.08761 1.04155 1.57663 0.69367 1.22317 0.90529 0.85185 0.95416 1.17613 0.91413 0.87820 1.08910 1.21450 0.89278 1.02246 0.97297 1.21593 1.01422 0.91763 0.97982 1.21808 0.94890 0.98246 0.94447 1.21392 0.92723 0.99161 1.00523 1.21268 0.87087 0.93408 1.02436 1.98430 1.13137 1.94053 1.96199 1.70798 1.04674 1.22903 1.28280 0.91351 0.85626 0.85601 0.71937 0.82848 0.81159 0.81137 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.72 13.97 21.65 0.30 -55.42 16 2 C 0.05 2.71 5.50 84.85 0.47 3.18 16 3 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 4 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 7 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 8 H 0.07 4.06 8.03 -2.91 -0.02 4.04 16 9 S -0.17 -8.53 18.55 -56.49 -1.05 -9.58 16 10 C -0.10 -3.90 6.16 71.23 0.44 -3.46 16 11 C 0.54 19.94 7.81 87.65 0.68 20.62 16 12 O -0.51 -23.06 14.54 -3.05 -0.04 -23.10 16 13 N -0.61 -18.47 5.44 -312.98 -1.70 -20.18 16 14 C 0.43 13.91 8.81 260.88 2.30 16.21 16 15 N -0.32 -10.85 10.95 -58.99 -0.65 -11.50 16 16 N -0.46 -10.47 7.34 -51.93 -0.38 -10.85 16 17 H 0.46 6.36 8.11 -213.11 -1.73 4.63 16 18 C 0.34 7.69 7.76 136.85 1.06 8.75 16 19 C -0.05 -0.84 5.88 -20.07 -0.12 -0.96 16 20 C -0.08 -0.64 9.70 22.51 0.22 -0.42 16 21 C -0.11 -0.36 10.03 22.24 0.22 -0.13 16 22 C -0.08 -0.26 10.04 22.32 0.22 -0.04 16 23 C -0.12 -1.04 9.82 22.26 0.22 -0.82 16 24 C -0.01 -0.20 6.35 22.58 0.14 -0.05 16 25 Cl -0.05 -0.95 26.17 -2.72 -0.07 -1.02 16 26 N -0.53 -14.75 8.52 -190.59 -1.62 -16.37 16 27 H 0.28 15.62 8.31 -92.71 -0.77 14.84 16 28 H 0.13 4.24 8.14 -2.40 -0.02 4.22 16 29 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 30 H 0.44 10.08 8.82 -92.71 -0.82 9.26 16 31 H 0.15 0.42 7.20 -2.91 -0.02 0.40 16 32 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.17 -0.50 8.06 -2.91 -0.02 -0.53 16 34 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -82.86 332.98 1.85 -81.02 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -1.39 Total: 6.95 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.54 Total: 12.97 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.05 Total: -114.32 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.05 Total: -9.58 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.07 Total: -1.02 kcal Total: -82.86 1.85 -81.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338210206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.356 kcal (2) G-P(sol) polarization free energy of solvation -82.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds