Wall clock time and date at job start Tue Mar 31 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48500 * 109.47193 * 239.99888 * 3 2 1 5 5 H 1.48499 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46901 * 119.99976 * 3 2 1 7 7 C 1.37876 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46745 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.46888 * 179.97438 * 11 10 9 13 13 S 1.65596 * 119.99654 * 164.99987 * 12 11 10 14 14 O 1.42097 * 106.40519 * 311.45834 * 13 12 11 15 15 O 1.42100 * 106.39746 * 178.53846 * 13 12 11 16 16 C 1.76203 * 107.21868 * 65.00355 * 13 12 11 17 17 C 1.38131 * 120.41630 * 115.24990 * 16 13 12 18 18 N 1.31893 * 120.79775 * 180.31132 * 17 16 13 19 19 C 1.32001 * 121.73764 * 359.71215 * 18 17 16 20 20 Cl 1.73596 * 119.62864 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.74921 * 359.97438 * 19 18 17 22 22 C 1.38766 * 119.13161 * 0.02562 * 21 19 18 23 23 Cl 1.73599 * 120.79366 * 179.97438 * 22 21 19 24 24 H 0.97001 * 119.99761 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47258 * 60.00033 * 9 7 2 26 26 H 1.09003 * 109.47026 * 299.99935 * 9 7 2 27 27 H 1.08998 * 109.47527 * 59.99991 * 10 9 7 28 28 H 1.09002 * 109.46966 * 299.99450 * 10 9 7 29 29 H 1.09001 * 109.47319 * 60.00206 * 11 10 9 30 30 H 1.08997 * 109.47544 * 299.99889 * 11 10 9 31 31 H 0.96996 * 119.99617 * 344.99742 * 12 11 10 32 32 H 1.08005 * 119.59954 * 0.02562 * 17 16 13 33 33 H 1.07994 * 120.43861 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4323 -6.1006 0.0006 13 16 1.9176 -7.6301 0.3722 14 8 1.1555 -7.5180 1.5663 15 8 3.0531 -8.4758 0.2515 16 6 0.7931 -8.1235 -0.8914 17 6 1.1000 -9.1795 -1.7273 18 7 0.2666 -9.5513 -2.6795 19 6 -0.8879 -8.9401 -2.8695 20 17 -1.9436 -9.4754 -4.1393 21 6 -1.2663 -7.8786 -2.0678 22 6 -0.4148 -7.4595 -1.0555 23 17 -0.8463 -6.1314 -0.0242 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 3.3640 -5.9419 -0.2176 32 1 2.0358 -9.7042 -1.6025 33 1 -2.2118 -7.3819 -2.2279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341699557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:26 Heat of formation + Delta-G solvation = -47.018462 kcal Electronic energy + Delta-G solvation = -22203.981046 eV Core-core repulsion = 18443.988201 eV Total energy + Delta-G solvation = -3759.992846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86518 -37.80735 -37.37896 -37.10308 -36.11990 -36.02673 -33.33222 -33.00639 -32.01998 -30.95831 -26.52354 -24.80630 -24.51348 -23.18393 -20.83167 -19.75839 -18.73884 -18.02905 -17.55564 -17.19148 -16.62164 -16.02996 -15.30633 -15.24228 -14.85623 -14.75251 -14.66389 -14.47557 -13.71090 -13.31121 -12.81118 -12.52396 -12.37921 -12.28038 -12.13372 -12.06161 -11.98503 -11.86678 -11.64616 -11.31746 -10.95183 -10.65345 -10.58587 -10.44183 -10.10015 -9.98206 -9.88687 -9.52682 -9.35330 -9.14036 -8.41592 -6.06874 -4.09716 -0.31186 0.15830 0.28125 0.92013 1.40132 2.58354 2.87262 3.29444 3.34342 3.36474 3.39763 3.70714 3.82614 4.11963 4.40291 4.47166 4.61799 4.76308 4.92470 5.17339 5.29322 5.49981 5.53145 5.75818 5.96916 6.46759 6.65381 6.84915 6.85825 7.01136 7.55953 7.67999 7.91176 8.32849 8.96342 9.54856 11.04310 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003272 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.830231 B = 8554.493527 C = 9712.427930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.118 4.118 11 C 0.103 3.897 12 N -1.104 6.104 13 S 2.698 3.302 14 O -0.934 6.934 15 O -0.955 6.955 16 C -0.732 4.732 17 C 0.233 3.767 18 N -0.487 5.487 19 C 0.233 3.767 20 Cl -0.004 7.004 21 C -0.167 4.167 22 C 0.101 3.899 23 Cl 0.016 6.984 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.422 0.578 32 H 0.196 0.804 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -19.349 -5.093 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.157 4.157 11 C -0.022 4.022 12 N -0.867 5.867 13 S 2.781 3.219 14 O -0.923 6.923 15 O -0.945 6.945 16 C -0.817 4.817 17 C 0.074 3.926 18 N -0.199 5.199 19 C 0.069 3.931 20 Cl 0.025 6.975 21 C -0.189 4.189 22 C 0.064 3.936 23 Cl 0.046 6.954 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.257 0.743 32 H 0.212 0.788 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.212 -20.399 -4.941 21.105 hybrid contribution -0.063 1.848 -0.424 1.897 sum -2.275 -18.551 -5.365 19.445 Atomic orbital electron populations 1.69943 1.06046 1.26839 1.50496 1.25012 0.94864 0.99284 0.95190 0.86645 0.79581 0.83047 0.78644 1.20242 1.21279 1.20205 1.21161 0.93041 0.90879 1.51078 0.92611 1.19058 0.93892 0.91001 0.97530 1.21919 0.99704 0.92610 1.01483 1.22346 0.91283 0.86941 1.01643 1.55441 1.19633 1.23640 1.87998 1.02117 0.73280 0.72772 0.73750 1.93656 1.72277 1.85743 1.40665 1.93590 1.48503 1.65747 1.86681 1.32304 1.13997 1.10301 1.25077 1.22650 0.96831 0.88676 0.84446 1.67257 1.02869 1.29611 1.20118 1.21936 0.90517 0.90584 0.90070 1.98457 1.61160 1.89604 1.48257 1.21893 1.02756 0.98507 0.95789 1.20926 0.92125 0.89326 0.91176 1.98570 1.92884 1.40498 1.63448 0.92866 0.96330 0.96292 0.92171 0.92404 0.91729 0.90170 0.74252 0.78778 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.12 -2.16 5.30 -26.73 -0.14 -2.30 16 11 C 0.10 1.55 4.13 -4.04 -0.02 1.54 16 12 N -1.10 -13.58 6.00 -10.61 -0.06 -13.65 16 13 S 2.70 33.38 5.44 -107.50 -0.58 32.80 16 14 O -0.93 -14.05 16.09 -57.17 -0.92 -14.97 16 15 O -0.96 -12.54 17.00 -57.17 -0.97 -13.51 16 16 C -0.73 -8.30 5.91 -39.41 -0.23 -8.53 16 17 C 0.23 2.42 10.71 -17.56 -0.19 2.23 16 18 N -0.49 -5.42 10.34 -10.38 -0.11 -5.53 16 19 C 0.23 2.42 7.27 -17.46 -0.13 2.29 16 20 Cl 0.00 -0.03 29.11 -51.86 -1.51 -1.54 16 21 C -0.17 -1.67 9.70 -39.36 -0.38 -2.05 16 22 C 0.10 1.16 6.14 -39.17 -0.24 0.92 16 23 Cl 0.02 0.21 21.03 -51.86 -1.09 -0.88 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 30 H 0.08 1.26 5.99 -51.93 -0.31 0.95 16 31 H 0.42 4.33 8.65 -34.47 -0.30 4.03 16 32 H 0.20 1.55 7.35 -52.48 -0.39 1.16 16 33 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.98 322.65 -9.52 -41.50 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.97 Total: -1.48 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.88 Total: -18.43 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.57 Total: -44.34 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.89 Total: -28.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 33.38 SS G_CDS: -0.58 Total: 32.80 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -2.60 Total: -2.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.98 -9.52 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341699557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds