Wall clock time and date at job start Tue Mar 31 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48500 * 109.47193 * 239.99888 * 3 2 1 5 5 H 1.48499 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46901 * 119.99976 * 3 2 1 7 7 C 1.37876 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46745 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.46888 * 179.97438 * 11 10 9 13 13 S 1.65596 * 119.99654 * 164.99987 * 12 11 10 14 14 O 1.42097 * 106.40519 * 311.45834 * 13 12 11 15 15 O 1.42100 * 106.39746 * 178.53846 * 13 12 11 16 16 C 1.76203 * 107.21868 * 65.00355 * 13 12 11 17 17 C 1.38131 * 120.41630 * 115.24990 * 16 13 12 18 18 N 1.31893 * 120.79775 * 180.31132 * 17 16 13 19 19 C 1.32001 * 121.73764 * 359.71215 * 18 17 16 20 20 Cl 1.73596 * 119.62864 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.74921 * 359.97438 * 19 18 17 22 22 C 1.38766 * 119.13161 * 0.02562 * 21 19 18 23 23 Cl 1.73599 * 120.79366 * 179.97438 * 22 21 19 24 24 H 0.97001 * 119.99761 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47258 * 60.00033 * 9 7 2 26 26 H 1.09003 * 109.47026 * 299.99935 * 9 7 2 27 27 H 1.08998 * 109.47527 * 59.99991 * 10 9 7 28 28 H 1.09002 * 109.46966 * 299.99450 * 10 9 7 29 29 H 1.09001 * 109.47319 * 60.00206 * 11 10 9 30 30 H 1.08997 * 109.47544 * 299.99889 * 11 10 9 31 31 H 0.96996 * 119.99617 * 344.99742 * 12 11 10 32 32 H 1.08005 * 119.59954 * 0.02562 * 17 16 13 33 33 H 1.07994 * 120.43861 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4323 -6.1006 0.0006 13 16 1.9176 -7.6301 0.3722 14 8 1.1555 -7.5180 1.5663 15 8 3.0531 -8.4758 0.2515 16 6 0.7931 -8.1235 -0.8914 17 6 1.1000 -9.1795 -1.7273 18 7 0.2666 -9.5513 -2.6795 19 6 -0.8879 -8.9401 -2.8695 20 17 -1.9436 -9.4754 -4.1393 21 6 -1.2663 -7.8786 -2.0678 22 6 -0.4148 -7.4595 -1.0555 23 17 -0.8463 -6.1314 -0.0242 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 3.3640 -5.9419 -0.2176 32 1 2.0358 -9.7042 -1.6025 33 1 -2.2118 -7.3819 -2.2279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341699557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:26 Heat of formation + Delta-G solvation = -69.914977 kcal Electronic energy + Delta-G solvation = -22204.973914 eV Core-core repulsion = 18443.988201 eV Total energy + Delta-G solvation = -3760.985713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69979 -38.81312 -38.27435 -37.99048 -37.40657 -37.11778 -35.18350 -33.87578 -32.84906 -32.66006 -28.25295 -25.65768 -25.36516 -24.86893 -22.39241 -20.80710 -19.67059 -18.97746 -18.57744 -18.36498 -18.17600 -17.28615 -16.48749 -16.28365 -16.08276 -15.95992 -15.78807 -15.61585 -14.68680 -14.53216 -14.24783 -13.97753 -13.63726 -13.35592 -13.30079 -13.26994 -13.12018 -12.98075 -12.74750 -12.66462 -12.55988 -12.42638 -11.81363 -11.68747 -11.39226 -11.30211 -11.20649 -10.95517 -10.71958 -10.51287 -10.44252 -8.16807 -6.26682 -1.18833 -0.83512 -0.54422 0.08736 0.53803 1.43434 1.45202 1.52866 1.66845 1.94041 2.42653 2.43847 2.88364 2.96261 3.17288 3.28929 3.55257 3.77553 3.91949 3.96436 4.20374 4.20897 4.43714 4.64324 4.74722 4.95572 5.16448 5.22879 5.56211 5.77290 5.88761 6.01195 6.03580 6.27972 6.90035 7.42309 8.94445 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003272 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.830231 B = 8554.493527 C = 9712.427930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.112 3.888 12 N -1.099 6.099 13 S 2.718 3.282 14 O -0.962 6.962 15 O -0.960 6.960 16 C -0.734 4.734 17 C 0.235 3.765 18 N -0.497 5.497 19 C 0.229 3.771 20 Cl 0.012 6.988 21 C -0.163 4.163 22 C 0.091 3.909 23 Cl -0.002 7.002 24 H 0.263 0.737 25 H 0.001 0.999 26 H -0.006 1.006 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.432 0.568 32 H 0.218 0.782 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -19.947 -5.973 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.014 4.014 12 N -0.862 5.862 13 S 2.802 3.198 14 O -0.951 6.951 15 O -0.950 6.950 16 C -0.821 4.821 17 C 0.077 3.923 18 N -0.209 5.209 19 C 0.065 3.935 20 Cl 0.041 6.959 21 C -0.185 4.185 22 C 0.055 3.945 23 Cl 0.027 6.973 24 H 0.071 0.929 25 H 0.019 0.981 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.270 0.730 32 H 0.234 0.766 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.260 -21.003 -5.813 21.829 hybrid contribution -0.397 1.938 -0.219 1.990 sum -1.657 -19.065 -6.032 20.064 Atomic orbital electron populations 1.70073 1.07634 1.27706 1.51665 1.25906 0.95716 1.03101 0.94909 0.85583 0.78316 0.78527 0.79103 1.19174 1.21151 1.19420 1.21671 0.93675 0.92298 1.50428 0.91972 1.18955 0.94421 0.92552 0.95434 1.21702 0.98637 0.92201 1.02203 1.22089 0.91212 0.86182 1.01908 1.55223 1.19936 1.22988 1.88094 1.01337 0.72838 0.72290 0.73290 1.93626 1.72866 1.86031 1.42618 1.93580 1.48902 1.65653 1.86843 1.32090 1.13792 1.11042 1.25212 1.23033 0.97419 0.88162 0.83725 1.67329 1.03257 1.29898 1.20393 1.22142 0.90533 0.90463 0.90318 1.98465 1.60587 1.89396 1.47466 1.22111 1.03272 0.98235 0.94900 1.21004 0.92710 0.89193 0.91566 1.98567 1.92982 1.41535 1.64180 0.92869 0.98089 0.98744 0.91923 0.91158 0.90809 0.90913 0.73000 0.76591 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.11 -3.91 5.30 30.60 0.16 -3.75 16 11 C 0.11 3.32 4.13 86.38 0.36 3.68 16 12 N -1.10 -25.68 6.00 -187.47 -1.12 -26.80 16 13 S 2.72 64.18 5.44 -56.49 -0.31 63.87 16 14 O -0.96 -28.50 16.09 -128.00 -2.06 -30.56 16 15 O -0.96 -23.56 17.00 -128.00 -2.18 -25.73 16 16 C -0.73 -15.65 5.91 22.38 0.13 -15.52 16 17 C 0.24 4.43 10.71 84.66 0.91 5.34 16 18 N -0.50 -10.11 10.34 -186.75 -1.93 -12.04 16 19 C 0.23 4.35 7.27 84.68 0.62 4.96 16 20 Cl 0.01 0.19 29.11 -2.72 -0.08 0.11 16 21 C -0.16 -3.01 9.70 22.41 0.22 -2.79 16 22 C 0.09 2.01 6.14 22.53 0.14 2.15 16 23 Cl 0.00 -0.06 21.03 -2.72 -0.06 -0.12 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.07 2.07 6.15 -2.39 -0.01 2.05 16 30 H 0.07 2.31 5.99 -2.39 -0.01 2.29 16 31 H 0.43 8.13 8.65 -96.75 -0.84 7.29 16 32 H 0.22 2.93 7.35 -2.91 -0.02 2.91 16 33 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.48 322.65 -1.71 -69.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.34 Total: 4.76 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 3.37 Total: -33.16 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -2.77 Total: -93.27 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -4.24 Total: -56.29 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 64.18 SS G_CDS: -0.31 Total: 63.87 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.14 Total: -0.01 kcal Total: -67.48 -1.71 -69.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341699557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.727 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds