Wall clock time and date at job start Tue Mar 31 2020 20:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99912 * 2 1 4 4 C 1.38776 * 120.15158 * 269.97636 * 3 2 1 5 5 Br 1.89102 * 119.96184 * 0.04498 * 4 3 2 6 6 C 1.38147 * 120.07149 * 180.02562 * 4 3 2 7 7 C 1.38554 * 120.39074 * 0.02611 * 6 4 3 8 8 C 1.37771 * 120.31571 * 359.69298 * 7 6 4 9 9 C 1.39786 * 119.91582 * 0.55706 * 8 7 6 10 10 C 1.47427 * 120.19184 * 179.74306 * 9 8 7 11 11 O 1.21620 * 120.00463 * 234.03733 * 10 9 8 12 12 N 1.34774 * 119.99954 * 54.30966 * 10 9 8 13 13 C 1.36911 * 120.00114 * 184.42207 * 12 10 9 14 14 H 1.07999 * 119.99803 * 321.70318 * 13 12 10 15 15 C 1.39019 * 120.00002 * 141.70783 * 13 12 10 16 16 N 1.31385 * 119.99870 * 158.00768 * 15 13 12 17 17 Si 1.86800 * 120.00268 * 338.01490 * 15 13 12 18 18 H 1.48502 * 109.47253 * 92.35390 * 17 15 13 19 19 H 1.48497 * 109.47093 * 212.35553 * 17 15 13 20 20 H 1.48503 * 109.46883 * 332.35667 * 17 15 13 21 21 C 1.46503 * 120.00009 * 4.42526 * 12 10 9 22 22 C 1.47203 * 109.47195 * 84.46485 * 21 12 10 23 23 N 4.51534 * 49.41109 * 32.31660 * 2 1 3 24 24 H 1.09007 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47322 * 300.00515 * 1 2 3 26 26 H 1.08995 * 109.47604 * 60.00219 * 1 2 3 27 27 H 1.07995 * 119.80339 * 179.97438 * 6 4 3 28 28 H 1.08007 * 119.84447 * 180.02562 * 7 6 4 29 29 H 1.08003 * 120.04024 * 180.28080 * 8 7 6 30 30 H 0.96996 * 119.99509 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.46966 * 204.46214 * 21 12 10 32 32 H 1.09001 * 109.46852 * 324.45918 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 2.3618 1.8298 -1.2000 5 35 1.9335 0.9905 -2.8395 6 6 2.9894 3.0604 -1.1981 7 6 3.3074 3.6832 -0.0019 8 6 2.9950 3.0840 1.1987 9 6 2.3646 1.8364 1.2119 10 6 2.0327 1.1870 2.4932 11 8 2.4150 0.0546 2.7181 12 7 1.3009 1.8463 3.4131 13 6 1.0690 1.2797 4.6377 14 1 0.8841 0.2185 4.7153 15 6 1.0715 2.0704 5.7811 16 7 0.4475 1.6627 6.8631 17 14 1.9619 3.7126 5.7793 18 1 1.0132 4.7896 5.3981 19 1 2.5008 3.9849 7.1359 20 1 3.0794 3.6686 4.8023 21 6 0.7534 3.1693 3.1026 22 6 -0.5234 3.0162 2.3862 23 7 -1.5089 2.8978 1.8331 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 3.2344 3.5395 -2.1344 28 1 3.7977 4.6455 -0.0107 29 1 3.2408 3.5755 2.1284 30 1 0.4489 2.2146 7.6607 31 1 0.5868 3.7199 4.0285 32 1 1.4582 3.7163 2.4764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351037041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:54 Heat of formation + Delta-G solvation = 19.263687 kcal Electronic energy + Delta-G solvation = -21536.756373 eV Core-core repulsion = 18124.890029 eV Total energy + Delta-G solvation = -3411.866343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45207 -38.53762 -37.24180 -36.31453 -34.79261 -32.70375 -32.07497 -30.59903 -29.28877 -27.88471 -26.84008 -25.54129 -23.13898 -22.24029 -19.76637 -18.73424 -17.75223 -16.89813 -16.61349 -16.30925 -15.88178 -15.44137 -15.03831 -14.28301 -14.13317 -13.86252 -13.70451 -13.52362 -12.98064 -12.83422 -12.62745 -12.55865 -12.31207 -11.95800 -11.88028 -11.52411 -11.42663 -11.03107 -10.89608 -10.53862 -10.32956 -10.14553 -9.92542 -9.39144 -8.99415 -8.77387 -8.68521 -8.15383 -6.60806 -4.22717 0.85085 0.94295 1.52172 2.79460 2.89186 2.98196 3.03399 3.14207 3.17783 3.53431 3.85761 3.91890 4.11266 4.37592 4.71519 4.74607 4.96072 5.07467 5.13507 5.29743 5.36481 5.42264 5.52439 5.54019 5.60387 5.83794 5.92889 6.08874 6.19947 6.45131 7.25296 7.48824 7.86199 7.99316 8.21058 8.67567 9.01632 9.39866 10.50327 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.004550 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.789153 B = 6152.759330 C = 6439.542840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.314 6.314 3 C 0.163 3.837 4 C -0.117 4.117 5 Br -0.041 7.041 6 C -0.072 4.072 7 C -0.123 4.123 8 C -0.077 4.077 9 C -0.123 4.123 10 C 0.517 3.483 11 O -0.518 6.518 12 N -0.454 5.454 13 C -0.326 4.326 14 H 0.112 0.888 15 C 0.065 3.935 16 N -0.848 5.848 17 Si 0.858 3.142 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.255 1.255 21 C 0.167 3.833 22 C 0.205 3.795 23 N -0.437 5.437 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.279 0.721 31 H 0.119 0.881 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 7.250 -16.162 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.230 6.230 3 C 0.115 3.885 4 C -0.197 4.197 5 Br 0.044 6.956 6 C -0.092 4.092 7 C -0.142 4.142 8 C -0.096 4.096 9 C -0.128 4.128 10 C 0.304 3.696 11 O -0.396 6.396 12 N -0.177 5.177 13 C -0.452 4.452 14 H 0.130 0.870 15 C -0.143 4.143 16 N -0.482 5.482 17 Si 0.683 3.317 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.179 1.179 21 C 0.040 3.960 22 C -0.114 4.114 23 N -0.116 5.116 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.205 5.959 -17.230 18.511 hybrid contribution 0.697 1.324 0.844 1.718 sum 3.903 7.283 -16.386 18.352 Atomic orbital electron populations 1.23014 0.77801 1.03822 1.00733 1.86024 1.20175 1.22966 1.93878 1.18399 0.94648 0.85665 0.89742 1.22217 1.08360 0.97884 0.91224 1.96671 1.93172 1.80933 1.24808 1.21101 0.96229 0.92498 0.99400 1.21096 1.01020 1.00815 0.91276 1.21468 0.95898 0.92928 0.99291 1.20773 1.02409 0.95083 0.94522 1.17864 0.81102 0.87247 0.83347 1.90738 1.53563 1.17085 1.78182 1.43488 1.44352 1.15612 1.14297 1.19046 1.49608 0.96764 0.79817 0.87021 1.25395 0.95336 0.98490 0.95057 1.69725 1.35913 1.38996 1.03563 0.87258 0.81538 0.83426 0.79438 1.19433 1.20287 1.17873 1.19862 0.86238 0.90181 0.99707 1.29988 0.95095 0.93288 0.93046 1.81059 1.11661 1.07881 1.10954 0.88282 0.93299 0.93465 0.84443 0.84214 0.83913 0.91082 0.86372 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.13 101.05 1.12 1.79 16 2 O -0.31 -5.91 8.96 -21.77 -0.20 -6.11 16 3 C 0.16 2.84 5.71 -38.66 -0.22 2.62 16 4 C -0.12 -1.68 6.23 -39.42 -0.25 -1.92 16 5 Br -0.04 -0.53 33.15 -68.01 -2.25 -2.78 16 6 C -0.07 -0.82 9.77 -39.50 -0.39 -1.21 16 7 C -0.12 -1.32 10.02 -39.64 -0.40 -1.72 16 8 C -0.08 -1.06 7.61 -39.17 -0.30 -1.36 16 9 C -0.12 -2.21 4.97 -104.85 -0.52 -2.73 16 10 C 0.52 11.52 6.69 -12.52 -0.08 11.44 16 11 O -0.52 -13.70 16.62 2.23 0.04 -13.66 16 12 N -0.45 -10.07 2.13 -119.15 -0.25 -10.32 16 13 C -0.33 -8.46 9.37 -14.99 -0.14 -8.60 16 14 H 0.11 3.33 7.88 -52.49 -0.41 2.92 16 15 C 0.07 1.63 5.27 -17.45 -0.09 1.54 16 16 N -0.85 -22.63 13.96 55.50 0.77 -21.86 16 17 Si 0.86 17.28 25.18 -169.99 -4.28 13.00 16 18 H -0.27 -4.82 6.55 56.52 0.37 -4.45 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.25 -4.78 7.11 56.52 0.40 -4.38 16 21 C 0.17 3.01 4.26 -6.83 -0.03 2.98 16 22 C 0.21 3.86 15.67 -20.75 -0.33 3.53 16 23 N -0.44 -8.61 18.54 42.17 0.78 -7.82 16 24 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.14 1.75 7.23 -52.48 -0.38 1.37 16 30 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.12 2.14 3.56 -51.93 -0.18 1.95 16 32 H 0.11 1.57 4.40 -51.93 -0.23 1.34 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -30.69 307.92 -4.85 -35.54 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.49 Total: 3.01 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.61 Total: 6.37 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 1.30 Total: -40.01 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.16 Total: -19.77 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -4.28 Total: 13.00 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.25 Total: -2.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.69 -4.85 -35.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351037041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds