Wall clock time and date at job start Tue Mar 31 2020 20:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99912 * 2 1 4 4 C 1.38776 * 120.15158 * 269.97636 * 3 2 1 5 5 Br 1.89102 * 119.96184 * 0.04498 * 4 3 2 6 6 C 1.38147 * 120.07149 * 180.02562 * 4 3 2 7 7 C 1.38554 * 120.39074 * 0.02611 * 6 4 3 8 8 C 1.37771 * 120.31571 * 359.69298 * 7 6 4 9 9 C 1.39786 * 119.91582 * 0.55706 * 8 7 6 10 10 C 1.47427 * 120.19184 * 179.74306 * 9 8 7 11 11 O 1.21620 * 120.00463 * 234.03733 * 10 9 8 12 12 N 1.34774 * 119.99954 * 54.30966 * 10 9 8 13 13 C 1.36911 * 120.00114 * 184.42207 * 12 10 9 14 14 H 1.07999 * 119.99803 * 321.70318 * 13 12 10 15 15 C 1.39019 * 120.00002 * 141.70783 * 13 12 10 16 16 N 1.31385 * 119.99870 * 158.00768 * 15 13 12 17 17 Si 1.86800 * 120.00268 * 338.01490 * 15 13 12 18 18 H 1.48502 * 109.47253 * 92.35390 * 17 15 13 19 19 H 1.48497 * 109.47093 * 212.35553 * 17 15 13 20 20 H 1.48503 * 109.46883 * 332.35667 * 17 15 13 21 21 C 1.46503 * 120.00009 * 4.42526 * 12 10 9 22 22 C 1.47203 * 109.47195 * 84.46485 * 21 12 10 23 23 N 4.51534 * 49.41109 * 32.31660 * 2 1 3 24 24 H 1.09007 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47322 * 300.00515 * 1 2 3 26 26 H 1.08995 * 109.47604 * 60.00219 * 1 2 3 27 27 H 1.07995 * 119.80339 * 179.97438 * 6 4 3 28 28 H 1.08007 * 119.84447 * 180.02562 * 7 6 4 29 29 H 1.08003 * 120.04024 * 180.28080 * 8 7 6 30 30 H 0.96996 * 119.99509 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.46966 * 204.46214 * 21 12 10 32 32 H 1.09001 * 109.46852 * 324.45918 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 2.3618 1.8298 -1.2000 5 35 1.9335 0.9905 -2.8395 6 6 2.9894 3.0604 -1.1981 7 6 3.3074 3.6832 -0.0019 8 6 2.9950 3.0840 1.1987 9 6 2.3646 1.8364 1.2119 10 6 2.0327 1.1870 2.4932 11 8 2.4150 0.0546 2.7181 12 7 1.3009 1.8463 3.4131 13 6 1.0690 1.2797 4.6377 14 1 0.8841 0.2185 4.7153 15 6 1.0715 2.0704 5.7811 16 7 0.4475 1.6627 6.8631 17 14 1.9619 3.7126 5.7793 18 1 1.0132 4.7896 5.3981 19 1 2.5008 3.9849 7.1359 20 1 3.0794 3.6686 4.8023 21 6 0.7534 3.1693 3.1026 22 6 -0.5234 3.0162 2.3862 23 7 -1.5089 2.8978 1.8331 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 3.2344 3.5395 -2.1344 28 1 3.7977 4.6455 -0.0107 29 1 3.2408 3.5755 2.1284 30 1 0.4489 2.2146 7.6607 31 1 0.5868 3.7199 4.0285 32 1 1.4582 3.7163 2.4764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351037041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:53 Heat of formation + Delta-G solvation = -1.385994 kcal Electronic energy + Delta-G solvation = -21537.651810 eV Core-core repulsion = 18124.890029 eV Total energy + Delta-G solvation = -3412.761781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79441 -40.05474 -38.41954 -37.94105 -36.52247 -34.35046 -33.39274 -31.75647 -30.38601 -29.46095 -28.16225 -27.22230 -24.47743 -23.32648 -21.29709 -20.41278 -19.06390 -18.48743 -18.03937 -17.61969 -17.39810 -16.80487 -16.24122 -15.67752 -15.61424 -15.42413 -15.01498 -14.89610 -14.53688 -14.42145 -14.12479 -13.84573 -13.70001 -13.34619 -13.21196 -12.83228 -12.76159 -12.53036 -12.25172 -11.86274 -11.77473 -11.36832 -11.26990 -11.09566 -10.63167 -10.11188 -9.88652 -9.73401 -8.51997 -6.23642 -0.23453 -0.13440 0.49277 1.24047 1.33389 1.38063 1.52035 1.65207 1.79334 2.21155 2.24512 2.55613 2.68603 2.77220 3.11277 3.53529 3.83108 3.96368 4.02260 4.12152 4.14037 4.17360 4.19698 4.26276 4.47031 4.51562 4.97232 5.08006 5.19486 5.43470 5.55966 5.99191 6.22974 6.33967 6.41912 6.79463 7.09039 7.61800 8.64283 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.004550 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.789153 B = 6152.759330 C = 6439.542840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.340 6.340 3 C 0.133 3.867 4 C -0.128 4.128 5 Br -0.033 7.033 6 C -0.056 4.056 7 C -0.095 4.095 8 C -0.078 4.078 9 C -0.154 4.154 10 C 0.518 3.482 11 O -0.580 6.580 12 N -0.460 5.460 13 C -0.348 4.348 14 H 0.043 0.957 15 C 0.016 3.984 16 N -0.902 5.902 17 Si 0.924 3.076 18 H -0.220 1.220 19 H -0.283 1.283 20 H -0.225 1.225 21 C 0.168 3.832 22 C 0.213 3.787 23 N -0.455 5.455 24 H 0.108 0.892 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.176 0.824 28 H 0.196 0.804 29 H 0.165 0.835 30 H 0.284 0.716 31 H 0.126 0.874 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 12.075 -18.562 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.256 6.256 3 C 0.086 3.914 4 C -0.207 4.207 5 Br 0.053 6.947 6 C -0.076 4.076 7 C -0.114 4.114 8 C -0.097 4.097 9 C -0.159 4.159 10 C 0.308 3.692 11 O -0.462 6.462 12 N -0.182 5.182 13 C -0.475 4.475 14 H 0.061 0.939 15 C -0.188 4.188 16 N -0.537 5.537 17 Si 0.743 3.257 18 H -0.144 1.144 19 H -0.209 1.209 20 H -0.147 1.147 21 C 0.043 3.957 22 C -0.106 4.106 23 N -0.134 5.134 24 H 0.126 0.874 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.194 0.806 28 H 0.213 0.787 29 H 0.182 0.818 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.125 10.805 -19.664 23.015 hybrid contribution 0.070 -0.282 1.510 1.538 sum 5.195 10.523 -18.154 21.617 Atomic orbital electron populations 1.22997 0.77595 1.04324 1.00000 1.85986 1.20741 1.24804 1.94093 1.18680 0.95997 0.85730 0.90970 1.22386 1.08871 0.98969 0.90518 1.96677 1.93245 1.81343 1.23465 1.21686 0.93495 0.90788 1.01600 1.21668 0.98487 1.01952 0.89250 1.21794 0.94997 0.91085 1.01820 1.20482 1.05980 0.97466 0.91922 1.18595 0.79546 0.86425 0.84616 1.90683 1.55748 1.19978 1.79767 1.43436 1.44617 1.17087 1.13056 1.18533 1.51722 0.94543 0.82742 0.93947 1.26337 0.94976 1.03894 0.93620 1.69861 1.37401 1.41761 1.04699 0.86215 0.81410 0.77983 0.80064 1.14386 1.20885 1.14736 1.20171 0.86629 0.88066 1.00840 1.30140 0.95074 0.92792 0.92626 1.81057 1.12330 1.08176 1.11866 0.87351 0.96276 0.91653 0.80640 0.78738 0.81774 0.90578 0.85731 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 11.13 113.37 1.26 2.81 16 2 O -0.34 -13.20 8.96 -87.07 -0.78 -13.98 16 3 C 0.13 4.55 5.71 22.87 0.13 4.68 16 4 C -0.13 -3.30 6.23 22.38 0.14 -3.16 16 5 Br -0.03 -0.77 33.15 -20.37 -0.68 -1.45 16 6 C -0.06 -0.96 9.77 22.32 0.22 -0.75 16 7 C -0.10 -1.39 10.02 22.23 0.22 -1.17 16 8 C -0.08 -1.79 7.61 22.53 0.17 -1.62 16 9 C -0.15 -5.33 4.97 -20.01 -0.10 -5.43 16 10 C 0.52 23.84 6.69 86.66 0.58 24.42 16 11 O -0.58 -32.98 16.62 -1.20 -0.02 -33.00 16 12 N -0.46 -20.75 2.13 -649.14 -1.39 -22.13 16 13 C -0.35 -19.25 9.37 84.09 0.79 -18.46 16 14 H 0.04 2.85 7.88 -2.91 -0.02 2.82 16 15 C 0.02 0.80 5.27 84.95 0.45 1.25 16 16 N -0.90 -50.44 13.96 21.68 0.30 -50.13 16 17 Si 0.92 33.69 25.18 68.60 1.73 35.41 16 18 H -0.22 -6.42 6.55 99.48 0.65 -5.77 16 19 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.23 -7.12 7.11 99.48 0.71 -6.41 16 21 C 0.17 5.69 4.26 84.57 0.36 6.05 16 22 C 0.21 7.79 15.67 89.44 1.40 9.19 16 23 N -0.46 -17.75 18.54 20.01 0.37 -17.38 16 24 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 28 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 29 H 0.16 3.00 7.23 -2.91 -0.02 2.98 16 30 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.13 4.06 3.56 -2.39 -0.01 4.05 16 32 H 0.16 3.76 4.40 -2.39 -0.01 3.75 16 Total: -1.00 -77.43 307.92 6.29 -71.14 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.13 Total: 13.73 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 5.62 Total: 17.81 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -0.71 Total: -89.65 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.80 Total: -46.99 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 1.73 Total: 35.41 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.68 Total: -1.45 kcal Total: -77.43 6.29 -71.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351037041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.750 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds