Wall clock time and date at job start Tue Mar 31 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99514 * 2 1 4 4 C 1.37568 * 120.82126 * 180.29543 * 3 2 1 5 5 C 1.38056 * 114.24270 * 180.21542 * 4 3 2 6 6 C 1.47082 * 127.75529 * 179.80144 * 5 4 3 7 7 O 1.21642 * 120.00438 * 359.71116 * 6 5 4 8 8 N 1.34778 * 119.99373 * 179.70820 * 6 5 4 9 9 C 1.39994 * 119.99706 * 185.61393 * 8 6 5 10 10 C 1.38733 * 120.08371 * 34.08112 * 9 8 6 11 11 C 1.38176 * 120.02267 * 179.74638 * 10 9 8 12 12 C 1.38557 * 120.17693 * 0.25988 * 11 10 9 13 13 F 1.35101 * 119.91851 * 180.02562 * 12 11 10 14 14 C 1.38337 * 120.16197 * 359.97438 * 12 11 10 15 15 C 1.38735 * 119.97835 * 0.02562 * 14 12 11 16 16 O 1.35780 * 120.08936 * 179.97438 * 15 14 12 17 17 C 1.34800 * 117.00128 * 354.19790 * 16 15 14 18 18 H 1.08007 * 119.99581 * 354.51893 * 17 16 15 19 19 C 1.38632 * 120.00462 * 174.52456 * 17 16 15 20 20 N 1.31574 * 119.99572 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00325 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47150 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46882 * 119.99860 * 21 19 17 24 24 H 1.48500 * 109.47413 * 239.99668 * 21 19 17 25 25 S 1.77236 * 104.48065 * 359.54592 * 5 4 3 26 26 N 1.30361 * 120.82739 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47493 * 59.99984 * 1 2 3 28 28 H 1.09005 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46940 * 299.99429 * 1 2 3 30 30 H 1.07994 * 122.87705 * 0.06096 * 4 3 2 31 31 H 0.96998 * 120.00815 * 5.61143 * 8 6 5 32 32 H 1.08005 * 119.98400 * 0.02729 * 10 9 8 33 33 H 1.07999 * 119.90907 * 180.27469 * 11 10 9 34 34 H 1.08006 * 120.01187 * 179.97438 * 14 12 11 35 35 H 0.97000 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 -0.0061 5 6 3.9004 2.5972 -0.0005 6 6 5.3044 3.0355 -0.0006 7 8 6.1990 2.2112 -0.0008 8 7 5.5997 4.3505 -0.0006 9 6 6.9304 4.7691 -0.1193 10 6 7.8211 4.0428 -0.8964 11 6 9.1329 4.4600 -1.0169 12 6 9.5643 5.6004 -0.3588 13 9 10.8479 6.0039 -0.4807 14 6 8.6837 6.3275 0.4219 15 6 7.3651 5.9146 0.5475 16 8 6.4990 6.6263 1.3136 17 6 7.0097 7.6538 2.0211 18 1 8.0761 7.8243 2.0326 19 6 6.1661 8.4916 2.7341 20 7 4.8669 8.2841 2.7198 21 14 6.8738 9.9150 3.7151 22 1 8.3513 9.9316 3.5676 23 1 6.3119 11.1929 3.2087 24 1 6.5207 9.7526 5.1483 25 16 2.4468 3.6112 -0.0009 26 7 1.3520 2.3149 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0643 0.4375 -0.0120 31 1 4.8904 5.0070 0.0816 32 1 7.4879 3.1536 -1.4110 33 1 9.8236 3.8958 -1.6259 34 1 9.0227 7.2159 0.9342 35 1 4.2766 8.8704 3.2184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362244709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:51 Heat of formation + Delta-G solvation = -60.842764 kcal Electronic energy + Delta-G solvation = -25525.705444 eV Core-core repulsion = 21339.209606 eV Total energy + Delta-G solvation = -4186.495838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.34175 -40.48599 -40.08050 -38.71277 -36.72316 -36.30388 -34.33253 -32.49233 -31.54412 -29.57923 -28.80423 -28.01794 -25.63991 -25.04541 -22.76768 -22.02314 -21.10689 -19.95617 -18.70838 -18.43508 -18.03451 -17.71158 -16.82880 -16.42461 -16.27589 -15.57000 -15.33843 -15.06066 -14.89218 -14.68802 -14.54928 -14.32234 -13.77533 -13.62479 -13.53607 -13.50930 -13.23273 -12.46984 -12.33041 -12.22054 -11.73716 -11.55415 -11.48838 -11.31166 -11.08558 -10.93856 -10.82486 -10.56161 -10.11571 -9.91739 -9.84600 -9.64841 -9.03829 -8.52502 -8.01559 -7.26745 -6.67587 -4.25450 0.00720 1.04903 1.41721 1.67666 2.01189 2.12960 2.73127 3.02150 3.04646 3.07696 3.10196 3.31123 3.79035 4.21694 4.46943 4.74800 4.83811 4.88842 4.91125 5.00193 5.00386 5.09919 5.30360 5.45735 5.54569 5.65748 5.88724 5.92096 6.02890 6.38218 6.63062 6.80041 6.80534 6.82072 6.85145 7.08716 7.49315 7.58742 7.75626 8.16501 8.77877 9.36319 10.49031 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003524 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.270992 B = 7943.456273 C =10273.274939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.296 6.296 3 C 0.302 3.698 4 C -0.132 4.132 5 C -0.177 4.177 6 C 0.588 3.412 7 O -0.509 6.509 8 N -0.635 5.635 9 C 0.052 3.948 10 C -0.043 4.043 11 C -0.229 4.229 12 C 0.137 3.863 13 F -0.149 7.149 14 C -0.257 4.257 15 C 0.163 3.837 16 O -0.165 6.165 17 C -0.393 4.393 18 H 0.096 0.904 19 C 0.044 3.956 20 N -0.854 5.854 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 S 0.311 5.689 26 N -0.515 5.515 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.178 0.822 31 H 0.415 0.585 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -9.824 -5.818 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.202 6.202 3 C 0.089 3.911 4 C -0.169 4.169 5 C -0.309 4.309 6 C 0.372 3.628 7 O -0.386 6.386 8 N -0.279 5.279 9 C -0.042 4.042 10 C -0.063 4.063 11 C -0.250 4.250 12 C 0.117 3.883 13 F -0.128 7.128 14 C -0.278 4.278 15 C 0.106 3.894 16 O -0.068 6.068 17 C -0.468 4.468 18 H 0.114 0.886 19 C -0.161 4.161 20 N -0.488 5.488 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.200 1.200 25 S 0.461 5.539 26 N -0.356 5.356 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.195 0.805 31 H 0.252 0.748 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.747 -8.959 -5.671 12.568 hybrid contribution 0.924 -0.203 0.626 1.134 sum -5.823 -9.161 -5.045 11.970 Atomic orbital electron populations 1.22976 0.76769 1.03522 1.02632 1.86303 1.22946 1.22577 1.88361 1.19873 0.89751 0.85264 0.96197 1.20700 0.92304 0.98426 1.05510 1.25946 0.99315 0.97885 1.07734 1.16621 0.85422 0.82828 0.77900 1.90833 1.46348 1.52402 1.48989 1.42890 1.08190 1.06387 1.70426 1.16728 0.84616 0.97465 1.05358 1.20465 0.91863 0.98549 0.95470 1.20441 0.96986 0.99333 1.08210 1.17471 0.78096 0.94567 0.98167 1.91424 1.36211 1.90476 1.94688 1.20875 0.93599 1.05092 1.08247 1.18781 0.89126 0.91453 0.90050 1.83929 1.33138 1.39953 1.49745 1.21413 0.93856 1.05813 1.25761 0.88633 1.25309 0.95161 0.98334 0.97344 1.70013 1.02444 1.37295 1.39034 0.85602 0.79198 0.79478 0.78985 1.18902 1.19940 1.19962 1.85362 0.89565 1.10996 1.67978 1.76395 1.27154 1.01268 1.30828 0.92120 0.88062 0.92072 0.80462 0.74793 0.84576 0.85675 0.83734 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.43 101.05 1.05 1.35 16 2 O -0.30 -3.37 10.52 -19.64 -0.21 -3.58 16 3 C 0.30 3.89 7.36 -18.42 -0.14 3.76 16 4 C -0.13 -1.71 10.10 -39.89 -0.40 -2.11 16 5 C -0.18 -2.53 6.74 -36.06 -0.24 -2.77 16 6 C 0.59 9.89 7.53 -12.67 -0.10 9.79 16 7 O -0.51 -9.54 14.71 5.24 0.08 -9.47 16 8 N -0.63 -11.35 5.19 -10.79 -0.06 -11.40 16 9 C 0.05 1.03 6.28 -83.48 -0.52 0.50 16 10 C -0.04 -0.78 8.65 -39.42 -0.34 -1.12 16 11 C -0.23 -4.00 10.02 -39.49 -0.40 -4.40 16 12 C 0.14 2.59 7.29 -39.43 -0.29 2.31 16 13 F -0.15 -2.72 17.26 2.25 0.04 -2.68 16 14 C -0.26 -5.36 9.11 -39.36 -0.36 -5.72 16 15 C 0.16 3.59 6.66 -38.93 -0.26 3.33 16 16 O -0.17 -4.16 9.31 0.04 0.00 -4.16 16 17 C -0.39 -10.02 9.44 30.88 0.29 -9.73 16 18 H 0.10 2.29 5.30 -52.48 -0.28 2.01 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.85 -22.66 13.67 55.48 0.76 -21.90 16 21 Si 0.94 19.17 29.55 -169.99 -5.02 14.15 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 25 S 0.31 4.17 23.28 -107.50 -2.50 1.66 16 26 N -0.51 -6.94 11.03 29.19 0.32 -6.62 16 27 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.18 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.42 7.16 7.93 -40.82 -0.32 6.84 16 32 H 0.14 2.30 6.48 -52.48 -0.34 1.95 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.15 3.01 5.71 -52.48 -0.30 2.71 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -28.69 335.17 -5.82 -34.52 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -2.49 Total: 8.21 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.79 Total: -3.78 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 1.02 Total: -39.93 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.13 Total: -17.21 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.50 Total: 1.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.69 -5.82 -34.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362244709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.327 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds