Wall clock time and date at job start Tue Mar 31 2020 21:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99514 * 2 1 4 4 C 1.37568 * 120.82126 * 180.29543 * 3 2 1 5 5 C 1.38056 * 114.24270 * 180.21542 * 4 3 2 6 6 C 1.47082 * 127.75529 * 179.80144 * 5 4 3 7 7 O 1.21642 * 120.00438 * 359.71116 * 6 5 4 8 8 N 1.34778 * 119.99373 * 179.70820 * 6 5 4 9 9 C 1.39994 * 119.99706 * 185.61393 * 8 6 5 10 10 C 1.38733 * 120.08371 * 34.08112 * 9 8 6 11 11 C 1.38176 * 120.02267 * 179.74638 * 10 9 8 12 12 C 1.38557 * 120.17693 * 0.25988 * 11 10 9 13 13 F 1.35101 * 119.91851 * 180.02562 * 12 11 10 14 14 C 1.38337 * 120.16197 * 359.97438 * 12 11 10 15 15 C 1.38735 * 119.97835 * 0.02562 * 14 12 11 16 16 O 1.35780 * 120.08936 * 179.97438 * 15 14 12 17 17 C 1.34800 * 117.00128 * 354.19790 * 16 15 14 18 18 H 1.08007 * 119.99581 * 354.51893 * 17 16 15 19 19 C 1.38632 * 120.00462 * 174.52456 * 17 16 15 20 20 N 1.31574 * 119.99572 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00325 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47150 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46882 * 119.99860 * 21 19 17 24 24 H 1.48500 * 109.47413 * 239.99668 * 21 19 17 25 25 S 1.77236 * 104.48065 * 359.54592 * 5 4 3 26 26 N 1.30361 * 120.82739 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47493 * 59.99984 * 1 2 3 28 28 H 1.09005 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46940 * 299.99429 * 1 2 3 30 30 H 1.07994 * 122.87705 * 0.06096 * 4 3 2 31 31 H 0.96998 * 120.00815 * 5.61143 * 8 6 5 32 32 H 1.08005 * 119.98400 * 0.02729 * 10 9 8 33 33 H 1.07999 * 119.90907 * 180.27469 * 11 10 9 34 34 H 1.08006 * 120.01187 * 179.97438 * 14 12 11 35 35 H 0.97000 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 -0.0061 5 6 3.9004 2.5972 -0.0005 6 6 5.3044 3.0355 -0.0006 7 8 6.1990 2.2112 -0.0008 8 7 5.5997 4.3505 -0.0006 9 6 6.9304 4.7691 -0.1193 10 6 7.8211 4.0428 -0.8964 11 6 9.1329 4.4600 -1.0169 12 6 9.5643 5.6004 -0.3588 13 9 10.8479 6.0039 -0.4807 14 6 8.6837 6.3275 0.4219 15 6 7.3651 5.9146 0.5475 16 8 6.4990 6.6263 1.3136 17 6 7.0097 7.6538 2.0211 18 1 8.0761 7.8243 2.0326 19 6 6.1661 8.4916 2.7341 20 7 4.8669 8.2841 2.7198 21 14 6.8738 9.9150 3.7151 22 1 8.3513 9.9316 3.5676 23 1 6.3119 11.1929 3.2087 24 1 6.5207 9.7526 5.1483 25 16 2.4468 3.6112 -0.0009 26 7 1.3520 2.3149 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0643 0.4375 -0.0120 31 1 4.8904 5.0070 0.0816 32 1 7.4879 3.1536 -1.4110 33 1 9.8236 3.8958 -1.6259 34 1 9.0227 7.2159 0.9342 35 1 4.2766 8.8704 3.2184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362244709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:50 Heat of formation + Delta-G solvation = -80.354522 kcal Electronic energy + Delta-G solvation = -25526.551537 eV Core-core repulsion = 21339.209606 eV Total energy + Delta-G solvation = -4187.341931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84216 -41.82954 -41.20964 -40.25784 -38.14215 -37.49002 -35.79156 -34.31909 -32.68781 -31.14738 -30.21627 -28.92876 -27.43348 -26.19665 -24.18564 -23.47550 -22.45734 -21.17956 -20.18878 -19.88353 -19.51220 -18.82195 -18.29138 -17.56959 -17.34202 -17.07010 -16.94009 -16.54506 -16.13167 -16.03031 -15.91453 -15.66938 -15.46037 -15.24725 -14.87918 -14.52525 -14.44335 -14.03972 -13.83124 -13.43309 -13.10203 -13.00570 -12.65395 -12.57932 -12.34855 -12.15333 -12.12026 -11.98727 -11.70033 -11.49670 -11.16953 -10.95592 -10.83431 -9.60846 -9.54908 -8.85856 -8.51365 -6.17487 -1.11723 -0.03502 0.14361 0.37233 0.44110 1.03859 1.38603 1.43944 1.54131 1.56626 1.77630 2.13132 2.21473 2.62886 3.04646 3.13459 3.31275 3.42436 3.69129 3.92040 4.03285 4.16942 4.29794 4.30764 4.35795 4.50384 4.53784 4.72270 4.86200 4.94181 5.00153 5.20218 5.25169 5.31038 5.39291 5.90563 5.92142 5.96378 6.17246 6.75305 6.93394 7.59592 8.69046 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003524 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.270992 B = 7943.456273 C =10273.274939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.302 3.698 4 C -0.115 4.115 5 C -0.193 4.193 6 C 0.595 3.405 7 O -0.528 6.528 8 N -0.640 5.640 9 C 0.053 3.947 10 C -0.043 4.043 11 C -0.202 4.202 12 C 0.131 3.869 13 F -0.143 7.143 14 C -0.263 4.263 15 C 0.137 3.863 16 O -0.201 6.201 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.007 4.007 20 N -0.902 5.902 21 Si 1.010 2.990 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.270 1.270 25 S 0.312 5.688 26 N -0.518 5.518 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.194 0.806 31 H 0.416 0.584 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -11.336 -6.611 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.205 6.205 3 C 0.089 3.911 4 C -0.153 4.153 5 C -0.325 4.325 6 C 0.382 3.618 7 O -0.406 6.406 8 N -0.284 5.284 9 C -0.041 4.041 10 C -0.063 4.063 11 C -0.222 4.222 12 C 0.111 3.889 13 F -0.121 7.121 14 C -0.284 4.284 15 C 0.083 3.917 16 O -0.106 6.106 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.207 4.207 20 N -0.538 5.538 21 Si 0.831 3.169 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.196 1.196 25 S 0.462 5.538 26 N -0.361 5.361 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.211 0.789 31 H 0.253 0.747 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.155 0.845 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.183 -10.501 -6.495 13.809 hybrid contribution 0.782 -0.010 0.694 1.046 sum -5.401 -10.511 -5.800 13.164 Atomic orbital electron populations 1.23266 0.75010 1.05706 1.02513 1.86321 1.24657 1.21525 1.87976 1.19947 0.89813 0.85689 0.95686 1.20889 0.92636 0.98304 1.03461 1.25608 0.98257 0.98711 1.09919 1.16788 0.86270 0.82041 0.76715 1.90807 1.47282 1.52628 1.49873 1.42957 1.07628 1.07012 1.70772 1.17015 0.85732 0.96747 1.04624 1.20732 0.91848 0.98730 0.94975 1.20866 0.97108 0.97959 1.06248 1.17487 0.78157 0.94977 0.98269 1.91442 1.35596 1.90495 1.94611 1.20945 0.93663 1.05245 1.08563 1.19154 0.89530 0.92236 0.90761 1.83907 1.34125 1.40979 1.51608 1.21768 0.94350 1.06302 1.26621 0.88215 1.26359 0.95465 1.00684 0.98203 1.70119 1.03757 1.38951 1.40947 0.84627 0.78817 0.76142 0.77350 1.17970 1.19263 1.19553 1.85400 0.89217 1.11015 1.68137 1.76413 1.27206 1.01507 1.30958 0.92032 0.84811 0.92360 0.78943 0.74711 0.82824 0.81982 0.84482 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.43 113.37 1.18 1.60 16 2 O -0.30 -6.19 10.52 -93.20 -0.98 -7.17 16 3 C 0.30 7.30 7.36 84.75 0.62 7.92 16 4 C -0.11 -2.80 10.10 22.07 0.22 -2.57 16 5 C -0.19 -5.39 6.74 24.55 0.17 -5.23 16 6 C 0.60 19.72 7.53 86.56 0.65 20.37 16 7 O -0.53 -19.11 14.71 -4.16 -0.06 -19.17 16 8 N -0.64 -23.03 5.19 -306.28 -1.59 -24.62 16 9 C 0.05 2.08 6.28 38.26 0.24 2.32 16 10 C -0.04 -1.45 8.65 22.37 0.19 -1.26 16 11 C -0.20 -6.43 10.02 22.33 0.22 -6.21 16 12 C 0.13 4.75 7.29 22.37 0.16 4.91 16 13 F -0.14 -4.91 17.26 44.97 0.78 -4.13 16 14 C -0.26 -11.02 9.11 22.41 0.20 -10.82 16 15 C 0.14 6.18 6.66 22.69 0.15 6.33 16 16 O -0.20 -10.58 9.31 -22.77 -0.21 -10.79 16 17 C -0.41 -21.95 9.44 67.91 0.64 -21.30 16 18 H 0.10 4.96 5.30 -2.91 -0.02 4.94 16 19 C -0.01 -0.36 5.49 84.83 0.47 0.11 16 20 N -0.90 -49.71 13.67 21.61 0.30 -49.42 16 21 Si 1.01 39.98 29.55 68.60 2.03 42.01 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 25 S 0.31 8.30 23.28 -56.49 -1.32 6.99 16 26 N -0.52 -13.44 11.03 -175.20 -1.93 -15.38 16 27 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 28 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 30 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.42 14.86 7.93 -92.71 -0.74 14.13 16 32 H 0.15 4.75 6.48 -2.91 -0.02 4.74 16 33 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.14 5.86 5.71 -2.91 -0.02 5.84 16 35 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -62.55 335.17 2.60 -59.95 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.46 Total: 25.56 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.13 Total: -3.83 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.22 Total: -89.41 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.25 Total: -37.13 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -1.32 Total: 6.99 kcal Total: -62.55 2.60 -59.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362244709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds