Wall clock time and date at job start Tue Mar 31 2020 21:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46914 * 240.00300 * 3 2 1 5 5 H 1.48500 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46983 * 120.00162 * 3 2 1 7 7 C 1.38631 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00068 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00032 * 174.95464 * 9 7 2 11 11 C 1.38733 * 120.08935 * 5.42433 * 10 9 7 12 12 C 1.38339 * 119.98087 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.92743 * 180.02562 * 12 11 10 14 14 C 1.38556 * 120.15364 * 359.75484 * 12 11 10 15 15 C 1.38189 * 120.17992 * 0.50279 * 14 12 11 16 16 C 1.38725 * 120.01732 * 359.49109 * 15 14 12 17 17 N 1.40023 * 120.08149 * 180.27365 * 16 15 14 18 18 C 1.34780 * 119.99643 * 325.39569 * 17 16 15 19 19 O 1.21651 * 120.00215 * 4.37530 * 18 17 16 20 20 C 1.47251 * 119.99820 * 184.37405 * 18 17 16 21 21 C 1.35212 * 123.14232 * 179.73282 * 20 18 17 22 22 S 1.70948 * 108.82788 * 179.97438 * 21 20 18 23 23 C 1.70779 * 91.12692 * 0.28058 * 22 21 20 24 24 C 1.50696 * 124.71668 * 179.85368 * 23 22 21 25 25 O 1.42905 * 109.47067 * 269.97919 * 24 23 22 26 26 N 1.28651 * 110.56165 * 359.83411 * 23 22 21 27 27 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00753 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.91040 * 180.25170 * 14 12 11 30 30 H 1.07997 * 119.99359 * 179.76904 * 15 14 12 31 31 H 0.96994 * 120.00019 * 145.38689 * 17 16 15 32 32 H 1.08007 * 125.59100 * 0.03685 * 21 20 18 33 33 H 1.08993 * 109.47129 * 29.97573 * 24 23 22 34 34 H 1.08993 * 109.47200 * 149.97937 * 24 23 22 35 35 H 0.96702 * 113.99873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5044 -0.1085 11 6 3.4561 -3.4396 -0.0971 12 6 4.2033 -4.5987 -0.2066 13 9 5.5527 -4.5345 -0.1949 14 6 3.5709 -5.8261 -0.3227 15 6 2.1909 -5.8977 -0.3402 16 6 1.4345 -4.7399 -0.2306 17 7 0.0362 -4.8115 -0.2423 18 6 -0.5848 -5.7370 -1.0001 19 8 0.0689 -6.5610 -1.6114 20 6 -2.0547 -5.7509 -1.0880 21 6 -2.7423 -6.6462 -1.8323 22 16 -4.4145 -6.3307 -1.6692 23 6 -4.0991 -5.0174 -0.6241 24 6 -5.1568 -4.1455 0.0019 25 8 -5.4341 -3.0398 -0.8599 26 7 -2.8329 -4.8762 -0.4452 27 1 -0.4850 0.8400 -0.0004 28 1 3.9514 -2.4845 -0.0027 29 1 4.1580 -6.7289 -0.4040 30 1 1.7012 -6.8555 -0.4345 31 1 -0.4855 -4.1951 0.2950 32 1 -2.3066 -7.4326 -2.4309 33 1 -6.0664 -4.7275 0.1502 34 1 -4.8009 -3.7762 0.9637 35 1 -6.1072 -2.4348 -0.5193 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362460874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:30 Heat of formation + Delta-G solvation = -74.566055 kcal Electronic energy + Delta-G solvation = -25826.512580 eV Core-core repulsion = 21639.421655 eV Total energy + Delta-G solvation = -4187.090925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.25379 -40.62173 -39.47698 -38.28435 -36.90317 -36.26704 -34.09421 -32.38675 -31.41861 -29.45866 -28.54754 -27.65012 -25.56084 -24.97646 -22.46646 -21.73950 -20.97117 -19.77806 -18.65309 -18.32217 -17.81087 -17.78889 -16.83950 -16.18468 -15.57383 -15.43289 -15.22029 -14.95990 -14.92486 -14.82086 -14.28313 -14.12254 -13.83829 -13.59429 -13.47158 -13.34406 -13.16893 -12.33332 -12.23612 -12.16632 -12.03584 -11.66170 -11.34274 -10.94890 -10.73722 -10.54246 -10.41750 -9.97983 -9.86013 -9.77600 -9.76295 -9.43333 -9.08488 -8.93226 -7.89237 -7.11584 -6.55601 -4.14580 0.37206 1.08057 1.46021 1.68265 2.10789 2.13862 3.08990 3.10698 3.12853 3.35191 3.58095 3.75057 3.87620 4.35026 4.41908 4.70628 4.84832 4.95588 4.99374 5.08494 5.13474 5.15106 5.27637 5.58368 5.73743 5.79212 6.03870 6.22514 6.54043 6.75468 6.91637 6.93596 7.02310 7.18617 7.33239 7.38902 7.63828 7.85363 7.93251 8.47146 8.88153 9.48894 10.60321 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004162 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.946572 B = 6725.358169 C = 9592.290055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.163 6.163 10 C 0.161 3.839 11 C -0.260 4.260 12 C 0.133 3.867 13 F -0.151 7.151 14 C -0.232 4.232 15 C -0.048 4.048 16 C 0.053 3.947 17 N -0.626 5.626 18 C 0.589 3.411 19 O -0.532 6.532 20 C 0.018 3.982 21 C -0.222 4.222 22 S 0.221 5.779 23 C 0.019 3.981 24 C 0.157 3.843 25 O -0.560 6.560 26 N -0.415 5.415 27 H 0.273 0.727 28 H 0.144 0.856 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.424 0.576 32 H 0.192 0.808 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -9.854 0.417 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.065 6.065 10 C 0.105 3.895 11 C -0.281 4.281 12 C 0.114 3.886 13 F -0.130 7.130 14 C -0.252 4.252 15 C -0.068 4.068 16 C -0.041 4.041 17 N -0.269 5.269 18 C 0.374 3.626 19 O -0.410 6.410 20 C -0.118 4.118 21 C -0.365 4.365 22 S 0.478 5.522 23 C -0.261 4.261 24 C 0.076 3.924 25 O -0.366 6.366 26 N -0.132 5.132 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.262 0.738 32 H 0.209 0.791 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.856 -10.451 -0.394 15.810 hybrid contribution 1.157 1.539 0.557 2.004 sum -10.699 -8.912 0.164 13.926 Atomic orbital electron populations 1.70037 1.05890 1.28103 1.44493 1.25311 0.95904 0.98860 0.96129 0.85753 0.78747 0.79462 0.79380 1.19356 1.20169 1.19334 1.21309 0.91937 0.80381 1.53470 0.88817 1.83946 1.33905 1.11285 1.77412 1.18789 0.89479 0.86989 0.94255 1.20838 0.93356 0.98495 1.15434 1.17464 0.75919 0.94345 1.00902 1.91411 1.30132 1.97379 1.94042 1.20459 0.94526 0.95886 1.14345 1.20643 0.92280 0.97046 0.96842 1.16876 0.81906 0.91429 1.13887 1.42909 1.05243 1.34673 1.44118 1.17022 0.84608 0.81865 0.79145 1.90767 1.65123 1.38928 1.46159 1.20382 0.95692 0.95198 1.00506 1.26650 0.98203 1.05947 1.05655 1.82661 1.03288 1.25415 1.40846 1.26699 0.94741 1.01421 1.03232 1.20373 0.92745 0.86783 0.92536 1.86564 1.63853 1.38388 1.47811 1.66911 1.02784 1.22473 1.21031 0.91735 0.83883 0.85861 0.84085 0.73843 0.79062 0.91219 0.89961 0.76259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.40 -10.73 9.49 30.88 0.29 -10.43 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.16 -4.45 9.31 0.02 0.00 -4.45 16 10 C 0.16 3.88 6.67 -38.93 -0.26 3.62 16 11 C -0.26 -5.83 9.14 -39.36 -0.36 -6.19 16 12 C 0.13 2.72 7.29 -39.43 -0.29 2.43 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.23 -4.39 10.02 -39.48 -0.40 -4.79 16 15 C -0.05 -0.95 8.69 -39.42 -0.34 -1.29 16 16 C 0.05 1.17 6.33 -83.47 -0.53 0.64 16 17 N -0.63 -12.98 5.19 -10.73 -0.06 -13.04 16 18 C 0.59 11.41 7.64 -12.60 -0.10 11.31 16 19 O -0.53 -10.83 14.13 5.23 0.07 -10.76 16 20 C 0.02 0.30 6.70 -84.53 -0.57 -0.27 16 21 C -0.22 -2.90 10.62 29.66 0.31 -2.59 16 22 S 0.22 2.22 22.92 -107.50 -2.46 -0.24 16 23 C 0.02 0.25 6.97 -13.61 -0.09 0.15 16 24 C 0.16 1.52 7.62 36.00 0.27 1.79 16 25 O -0.56 -6.16 13.64 -35.23 -0.48 -6.64 16 26 N -0.42 -6.88 10.13 -8.51 -0.09 -6.97 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.14 3.18 5.64 -52.48 -0.30 2.88 16 29 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.14 2.66 6.19 -52.49 -0.32 2.34 16 31 H 0.42 8.91 8.09 -40.82 -0.33 8.58 16 32 H 0.19 2.16 8.03 -52.48 -0.42 1.74 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.39 2.14 9.12 45.56 0.42 2.55 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -33.58 334.70 -5.97 -39.55 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -1.63 Total: 13.15 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.14 Total: -4.54 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.62 Total: -43.32 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.41 Total: -21.86 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.46 Total: -0.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.58 -5.97 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362460874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.016 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds