Wall clock time and date at job start Tue Mar 31 2020 21:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46914 * 240.00300 * 3 2 1 5 5 H 1.48500 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46983 * 120.00162 * 3 2 1 7 7 C 1.38631 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00068 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00032 * 174.95464 * 9 7 2 11 11 C 1.38733 * 120.08935 * 5.42433 * 10 9 7 12 12 C 1.38339 * 119.98087 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.92743 * 180.02562 * 12 11 10 14 14 C 1.38556 * 120.15364 * 359.75484 * 12 11 10 15 15 C 1.38189 * 120.17992 * 0.50279 * 14 12 11 16 16 C 1.38725 * 120.01732 * 359.49109 * 15 14 12 17 17 N 1.40023 * 120.08149 * 180.27365 * 16 15 14 18 18 C 1.34780 * 119.99643 * 325.39569 * 17 16 15 19 19 O 1.21651 * 120.00215 * 4.37530 * 18 17 16 20 20 C 1.47251 * 119.99820 * 184.37405 * 18 17 16 21 21 C 1.35212 * 123.14232 * 179.73282 * 20 18 17 22 22 S 1.70948 * 108.82788 * 179.97438 * 21 20 18 23 23 C 1.70779 * 91.12692 * 0.28058 * 22 21 20 24 24 C 1.50696 * 124.71668 * 179.85368 * 23 22 21 25 25 O 1.42905 * 109.47067 * 269.97919 * 24 23 22 26 26 N 1.28651 * 110.56165 * 359.83411 * 23 22 21 27 27 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00753 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.91040 * 180.25170 * 14 12 11 30 30 H 1.07997 * 119.99359 * 179.76904 * 15 14 12 31 31 H 0.96994 * 120.00019 * 145.38689 * 17 16 15 32 32 H 1.08007 * 125.59100 * 0.03685 * 21 20 18 33 33 H 1.08993 * 109.47129 * 29.97573 * 24 23 22 34 34 H 1.08993 * 109.47200 * 149.97937 * 24 23 22 35 35 H 0.96702 * 113.99873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0703 -3.5044 -0.1085 11 6 3.4561 -3.4396 -0.0971 12 6 4.2033 -4.5987 -0.2066 13 9 5.5527 -4.5345 -0.1949 14 6 3.5709 -5.8261 -0.3227 15 6 2.1909 -5.8977 -0.3402 16 6 1.4345 -4.7399 -0.2306 17 7 0.0362 -4.8115 -0.2423 18 6 -0.5848 -5.7370 -1.0001 19 8 0.0689 -6.5610 -1.6114 20 6 -2.0547 -5.7509 -1.0880 21 6 -2.7423 -6.6462 -1.8323 22 16 -4.4145 -6.3307 -1.6692 23 6 -4.0991 -5.0174 -0.6241 24 6 -5.1568 -4.1455 0.0019 25 8 -5.4341 -3.0398 -0.8599 26 7 -2.8329 -4.8762 -0.4452 27 1 -0.4850 0.8400 -0.0004 28 1 3.9514 -2.4845 -0.0027 29 1 4.1580 -6.7289 -0.4040 30 1 1.7012 -6.8555 -0.4345 31 1 -0.4855 -4.1951 0.2950 32 1 -2.3066 -7.4326 -2.4309 33 1 -6.0664 -4.7275 0.1502 34 1 -4.8009 -3.7762 0.9637 35 1 -6.1072 -2.4348 -0.5193 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362460874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:29 Heat of formation + Delta-G solvation = -101.148097 kcal Electronic energy + Delta-G solvation = -25827.665263 eV Core-core repulsion = 21639.421655 eV Total energy + Delta-G solvation = -4188.243608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.86940 -42.00340 -40.95050 -39.81364 -38.07016 -37.65466 -35.69079 -34.34577 -32.45171 -31.17160 -30.18436 -28.58387 -27.48064 -26.26174 -24.08985 -23.25803 -22.32820 -20.96290 -20.20968 -19.91112 -19.47683 -18.56148 -18.41620 -17.57740 -17.03151 -17.00309 -16.68165 -16.51012 -16.33058 -15.98597 -15.71285 -15.52240 -15.36942 -15.23928 -15.07068 -14.78452 -14.29434 -14.05122 -13.81953 -13.48489 -13.15441 -13.03007 -12.96259 -12.60474 -12.38706 -12.17891 -11.72497 -11.39854 -11.16598 -11.09598 -10.87842 -10.84308 -10.75183 -10.06742 -9.62171 -8.84507 -8.51819 -6.20290 -0.65338 0.08785 0.17722 0.41175 0.47997 0.80301 1.34361 1.44236 1.49661 1.97819 2.12275 2.16919 2.62354 2.77701 2.99071 3.15811 3.40630 3.47784 3.87320 3.92150 3.98707 4.13558 4.16359 4.26481 4.30420 4.52131 4.54955 4.72233 4.87515 4.97266 5.17178 5.24806 5.30077 5.43602 5.89744 5.95851 6.20601 6.47676 6.86251 6.89821 6.93224 7.59178 8.68193 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004162 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.946572 B = 6725.358169 C = 9592.290055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.011 4.011 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.102 0.898 9 O -0.204 6.204 10 C 0.133 3.867 11 C -0.265 4.265 12 C 0.130 3.870 13 F -0.141 7.141 14 C -0.203 4.203 15 C -0.047 4.047 16 C 0.049 3.951 17 N -0.636 5.636 18 C 0.588 3.412 19 O -0.548 6.548 20 C -0.021 4.021 21 C -0.225 4.225 22 S 0.342 5.658 23 C -0.010 4.010 24 C 0.153 3.847 25 O -0.588 6.588 26 N -0.461 5.461 27 H 0.275 0.725 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.418 0.582 32 H 0.208 0.792 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 -11.573 -0.222 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.211 4.211 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.496 4.496 8 H 0.119 0.881 9 O -0.109 6.109 10 C 0.079 3.921 11 C -0.285 4.285 12 C 0.110 3.890 13 F -0.120 7.120 14 C -0.222 4.222 15 C -0.068 4.068 16 C -0.045 4.045 17 N -0.278 5.278 18 C 0.375 3.625 19 O -0.427 6.427 20 C -0.157 4.157 21 C -0.368 4.368 22 S 0.599 5.401 23 C -0.289 4.289 24 C 0.072 3.928 25 O -0.398 6.398 26 N -0.179 5.179 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.173 0.827 31 H 0.255 0.745 32 H 0.225 0.775 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.435 -12.212 -1.027 17.459 hybrid contribution 1.268 1.742 0.693 2.263 sum -11.168 -10.470 -0.334 15.312 Atomic orbital electron populations 1.70176 1.07738 1.29073 1.47013 1.26509 0.96840 1.02397 0.95365 0.84696 0.77507 0.74466 0.79896 1.18558 1.19381 1.18036 1.21767 0.92588 0.81041 1.54205 0.88063 1.83936 1.34915 1.12009 1.80021 1.19196 0.90337 0.87064 0.95500 1.20920 0.93031 0.99344 1.15237 1.17441 0.76286 0.94152 1.01120 1.91436 1.29277 1.97340 1.93956 1.20892 0.94268 0.96677 1.10402 1.20879 0.92708 0.96786 0.96379 1.17244 0.82949 0.91456 1.12892 1.43023 1.04824 1.35192 1.44807 1.17480 0.86126 0.80812 0.78069 1.90715 1.66049 1.39356 1.46616 1.20069 0.94312 0.97693 1.03598 1.27052 1.00737 1.04953 1.04062 1.82187 0.99224 1.21572 1.37106 1.27379 0.94409 1.03156 1.03972 1.20637 0.93616 0.86901 0.91611 1.86489 1.65119 1.39444 1.48781 1.66882 1.04559 1.23750 1.22691 0.91617 0.84375 0.81892 0.82662 0.74531 0.77537 0.86582 0.90586 0.73829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.74 13.67 21.61 0.30 -53.44 16 2 C -0.01 -0.63 5.49 84.82 0.47 -0.16 16 3 Si 1.02 42.21 29.55 68.60 2.03 44.24 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.42 -23.95 9.49 67.91 0.64 -23.31 16 8 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 9 O -0.20 -11.83 9.31 -22.85 -0.21 -12.04 16 10 C 0.13 6.66 6.67 22.69 0.15 6.81 16 11 C -0.26 -12.06 9.14 22.41 0.20 -11.85 16 12 C 0.13 5.12 7.29 22.37 0.16 5.29 16 13 F -0.14 -5.19 17.26 44.97 0.78 -4.42 16 14 C -0.20 -7.18 10.02 22.33 0.22 -6.96 16 15 C -0.05 -1.84 8.69 22.37 0.19 -1.64 16 16 C 0.05 2.22 6.33 38.25 0.24 2.46 16 17 N -0.64 -27.70 5.19 -306.10 -1.59 -29.29 16 18 C 0.59 23.42 7.64 86.61 0.66 24.09 16 19 O -0.55 -22.36 14.13 -4.19 -0.06 -22.42 16 20 C -0.02 -0.72 6.70 40.55 0.27 -0.44 16 21 C -0.22 -5.54 10.62 67.12 0.71 -4.82 16 22 S 0.34 5.82 22.92 -56.49 -1.29 4.53 16 23 C -0.01 -0.26 6.97 88.57 0.62 0.36 16 24 C 0.15 2.76 7.62 71.23 0.54 3.30 16 25 O -0.59 -12.43 13.64 -148.98 -2.03 -14.46 16 26 N -0.46 -15.66 10.13 -180.84 -1.83 -17.49 16 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.14 6.33 5.64 -2.91 -0.02 6.31 16 29 H 0.16 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.16 5.64 6.19 -2.91 -0.02 5.62 16 31 H 0.42 19.03 8.09 -92.71 -0.75 18.28 16 32 H 0.21 4.25 8.03 -2.91 -0.02 4.22 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 4.10 9.12 -74.06 -0.68 3.43 16 Total: -1.00 -77.32 334.70 0.97 -76.36 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.21 Total: 35.32 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.10 Total: -6.88 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -3.12 Total: -100.22 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -2.30 Total: -48.93 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.29 Total: 4.53 kcal Total: -77.32 0.97 -76.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362460874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.790 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds