Wall clock time and date at job start Tue Mar 31 2020 21:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86802 * 120.00299 * 2 1 4 4 H 1.48500 * 109.47283 * 270.00263 * 3 2 1 5 5 H 1.48496 * 109.46931 * 30.00433 * 3 2 1 6 6 H 1.48495 * 109.46661 * 150.00306 * 3 2 1 7 7 C 1.38637 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00052 * 359.97438 * 7 2 1 9 9 O 1.34804 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.35770 * 117.00369 * 174.62909 * 9 7 2 11 11 C 1.38741 * 120.08805 * 354.37083 * 10 9 7 12 12 C 1.38345 * 119.97705 * 180.30517 * 11 10 9 13 13 F 1.35098 * 119.92085 * 180.02562 * 12 11 10 14 14 C 1.38545 * 120.15545 * 359.97379 * 12 11 10 15 15 C 1.38196 * 120.17699 * 0.02562 * 14 12 11 16 16 C 1.38707 * 120.01787 * 0.02562 * 15 14 12 17 17 N 1.40092 * 120.07188 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00162 * 334.49145 * 17 16 15 19 19 O 1.21293 * 119.99942 * 3.93466 * 18 17 16 20 20 C 1.50701 * 120.00175 * 183.93146 * 18 17 16 21 21 O 1.42896 * 109.47235 * 180.02562 * 20 18 17 22 22 C 1.35955 * 117.00178 * 180.02562 * 21 20 18 23 23 C 1.38258 * 121.64296 * 179.73735 * 22 21 20 24 24 C 1.35062 * 114.72701 * 179.80216 * 23 22 21 25 25 S 1.72030 * 105.59730 * 0.42088 * 24 23 22 26 26 N 1.30341 * 121.63789 * 0.02562 * 22 21 20 27 27 H 0.97008 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00570 * 0.25636 * 11 10 9 29 29 H 1.08000 * 119.91219 * 179.97438 * 14 12 11 30 30 H 1.08002 * 119.99047 * 180.02562 * 15 14 12 31 31 H 0.97004 * 120.00067 * 154.50037 * 17 16 15 32 32 H 1.08996 * 109.47589 * 300.00684 * 20 18 17 33 33 H 1.09008 * 109.46788 * 60.00104 * 20 18 17 34 34 H 1.08003 * 122.63458 * 0.02562 * 23 22 21 35 35 H 1.07999 * 127.19902 * 180.17468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4399 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4687 -2.1360 -0.0005 9 8 3.3568 -1.2008 0.0000 10 6 3.9731 -2.4053 0.1126 11 6 3.2243 -3.5514 0.3376 12 6 3.8552 -4.7767 0.4583 13 9 3.1249 -5.8921 0.6769 14 6 5.2341 -4.8628 0.3546 15 6 5.9862 -3.7252 0.1305 16 6 5.3613 -2.4929 0.0094 17 7 6.1226 -1.3390 -0.2172 18 6 7.4105 -1.2931 0.1775 19 8 7.9310 -2.2746 0.6640 20 6 8.2038 -0.0222 0.0143 21 8 9.5318 -0.2237 0.5019 22 6 10.3836 0.8334 0.4277 23 6 11.6884 0.7463 0.8766 24 6 12.4122 1.8774 0.7321 25 16 11.3439 3.0223 0.0198 26 7 10.0086 1.9803 -0.0650 27 1 -0.4850 0.8401 0.0004 28 1 2.1494 -3.4869 0.4192 29 1 5.7226 -5.8212 0.4499 30 1 7.0609 -3.7959 0.0498 31 1 5.7229 -0.5729 -0.6580 32 1 8.2418 0.2495 -1.0406 33 1 7.7266 0.7790 0.5788 34 1 12.0977 -0.1564 1.3056 35 1 13.4443 2.0321 1.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362465665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:33 Heat of formation + Delta-G solvation = -54.461486 kcal Electronic energy + Delta-G solvation = -25467.520587 eV Core-core repulsion = 21281.301462 eV Total energy + Delta-G solvation = -4186.219125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.33216 -40.78627 -40.10188 -38.81826 -36.99418 -36.38306 -34.40567 -32.56623 -31.52433 -30.17001 -29.51699 -27.81448 -25.50264 -24.60494 -22.66153 -21.70253 -20.91017 -20.44418 -18.72988 -18.41307 -18.10357 -17.85609 -17.09577 -16.84999 -16.70696 -15.51713 -15.33285 -15.11538 -14.94216 -14.75943 -14.64448 -14.17970 -13.98731 -13.77296 -13.50710 -13.46652 -13.28718 -12.88094 -12.51973 -12.39508 -11.96906 -11.62622 -11.59700 -11.35898 -11.04316 -11.01967 -10.86892 -10.51998 -10.11823 -10.02385 -9.81827 -9.48488 -9.05686 -8.65863 -8.05191 -7.32659 -6.59664 -4.27529 0.34590 1.04819 1.37020 1.60220 1.95119 2.13925 2.34906 2.61168 3.07567 3.10948 3.20500 3.47574 4.04447 4.17709 4.36810 4.39256 4.55084 4.84410 4.87595 4.89936 4.91940 4.94353 5.12173 5.35200 5.45125 5.64099 5.82087 5.84439 5.95980 6.31904 6.62161 6.72282 6.75014 6.81449 6.87031 7.38569 7.52501 7.59630 7.81117 8.15132 8.72857 9.26216 10.47303 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003167 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.499249 B = 8839.765851 C =11336.930804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.110 0.890 9 O -0.209 6.209 10 C 0.165 3.835 11 C -0.244 4.244 12 C 0.130 3.870 13 F -0.148 7.148 14 C -0.221 4.221 15 C -0.063 4.063 16 C 0.058 3.942 17 N -0.643 5.643 18 C 0.512 3.488 19 O -0.510 6.510 20 C 0.052 3.948 21 O -0.265 6.265 22 C 0.313 3.687 23 C -0.199 4.199 24 C -0.186 4.186 25 S 0.285 5.715 26 N -0.531 5.531 27 H 0.282 0.718 28 H 0.150 0.850 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.415 0.585 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.774 4.560 -0.608 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.127 0.873 9 O -0.113 6.113 10 C 0.110 3.890 11 C -0.265 4.265 12 C 0.110 3.890 13 F -0.127 7.127 14 C -0.241 4.241 15 C -0.083 4.083 16 C -0.036 4.036 17 N -0.288 5.288 18 C 0.298 3.702 19 O -0.386 6.386 20 C -0.027 4.027 21 O -0.170 6.170 22 C 0.099 3.901 23 C -0.235 4.235 24 C -0.333 4.333 25 S 0.433 5.567 26 N -0.371 5.371 27 H 0.093 0.907 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.174 0.826 31 H 0.251 0.749 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.185 0.815 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 21.076 5.673 -1.021 21.850 hybrid contribution 0.125 -0.604 0.552 0.828 sum 21.200 5.069 -0.468 21.803 Atomic orbital electron populations 1.69641 1.05600 1.28826 1.46540 1.24478 0.95047 0.98851 0.95396 0.86222 0.80400 0.81471 0.79070 1.19563 1.20513 1.18356 1.20762 0.76280 0.96911 1.52775 0.87317 1.83506 1.23236 1.24686 1.79886 1.18429 0.89360 0.86119 0.95075 1.20972 1.02170 0.90480 1.12890 1.17508 0.89105 0.81942 1.00402 1.91431 1.77890 1.51071 1.92275 1.20604 0.91490 0.99458 1.12528 1.21057 1.01254 0.88810 0.97150 1.16900 0.87064 0.86465 1.13139 1.42881 1.10420 1.17157 1.58335 1.19955 0.82184 0.89250 0.78808 1.90646 1.69384 1.35584 1.42968 1.22367 0.81181 0.96982 1.02202 1.86348 1.21344 1.31001 1.78282 1.20306 0.90037 0.86014 0.93736 1.20390 0.91481 1.02469 1.09120 1.26527 1.05921 0.97745 1.03138 1.84028 0.97273 1.18111 1.57252 1.76578 1.23455 1.05843 1.31232 0.90720 0.83219 0.85601 0.82564 0.74878 0.88106 0.87972 0.81515 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 13.96 55.48 0.77 -23.10 16 2 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.90 19.84 28.62 -169.99 -4.86 14.98 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.27 9.90 30.88 0.31 -9.96 16 8 H 0.11 2.96 5.52 -52.48 -0.29 2.67 16 9 O -0.21 -4.92 8.01 0.06 0.00 -4.92 16 10 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 11 C -0.24 -5.19 9.11 -39.36 -0.36 -5.55 16 12 C 0.13 2.52 7.29 -39.43 -0.29 2.24 16 13 F -0.15 -2.80 17.26 2.25 0.04 -2.76 16 14 C -0.22 -3.90 10.02 -39.48 -0.40 -4.30 16 15 C -0.06 -1.13 8.79 -39.42 -0.35 -1.48 16 16 C 0.06 1.11 6.47 -83.45 -0.54 0.57 16 17 N -0.64 -10.51 5.28 -9.72 -0.05 -10.56 16 18 C 0.51 7.96 7.80 -10.99 -0.09 7.87 16 19 O -0.51 -9.29 13.42 -14.36 -0.19 -9.48 16 20 C 0.05 0.65 5.88 36.01 0.21 0.86 16 21 O -0.27 -3.58 9.71 -39.51 -0.38 -3.96 16 22 C 0.31 3.66 7.42 -18.18 -0.13 3.52 16 23 C -0.20 -1.74 10.20 -40.70 -0.42 -2.15 16 24 C -0.19 -1.18 11.41 29.60 0.34 -0.84 16 25 S 0.29 2.30 23.71 -107.50 -2.55 -0.25 16 26 N -0.53 -6.21 11.14 28.92 0.32 -5.89 16 27 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.15 3.34 5.70 -52.49 -0.30 3.04 16 29 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.16 2.75 5.52 -52.49 -0.29 2.46 16 31 H 0.42 6.13 8.36 -40.82 -0.34 5.79 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.19 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -30.43 332.75 -6.42 -36.85 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.47 Total: 8.36 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.06 Total: -4.27 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 1.05 Total: -39.55 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.58 Total: -18.37 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.86 Total: 14.98 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.55 Total: -0.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.43 -6.42 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362465665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.608 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds