Wall clock time and date at job start Tue Mar 31 2020 21:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86802 * 120.00299 * 2 1 4 4 H 1.48500 * 109.47283 * 270.00263 * 3 2 1 5 5 H 1.48496 * 109.46931 * 30.00433 * 3 2 1 6 6 H 1.48495 * 109.46661 * 150.00306 * 3 2 1 7 7 C 1.38637 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00052 * 359.97438 * 7 2 1 9 9 O 1.34804 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.35770 * 117.00369 * 174.62909 * 9 7 2 11 11 C 1.38741 * 120.08805 * 354.37083 * 10 9 7 12 12 C 1.38345 * 119.97705 * 180.30517 * 11 10 9 13 13 F 1.35098 * 119.92085 * 180.02562 * 12 11 10 14 14 C 1.38545 * 120.15545 * 359.97379 * 12 11 10 15 15 C 1.38196 * 120.17699 * 0.02562 * 14 12 11 16 16 C 1.38707 * 120.01787 * 0.02562 * 15 14 12 17 17 N 1.40092 * 120.07188 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00162 * 334.49145 * 17 16 15 19 19 O 1.21293 * 119.99942 * 3.93466 * 18 17 16 20 20 C 1.50701 * 120.00175 * 183.93146 * 18 17 16 21 21 O 1.42896 * 109.47235 * 180.02562 * 20 18 17 22 22 C 1.35955 * 117.00178 * 180.02562 * 21 20 18 23 23 C 1.38258 * 121.64296 * 179.73735 * 22 21 20 24 24 C 1.35062 * 114.72701 * 179.80216 * 23 22 21 25 25 S 1.72030 * 105.59730 * 0.42088 * 24 23 22 26 26 N 1.30341 * 121.63789 * 0.02562 * 22 21 20 27 27 H 0.97008 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00570 * 0.25636 * 11 10 9 29 29 H 1.08000 * 119.91219 * 179.97438 * 14 12 11 30 30 H 1.08002 * 119.99047 * 180.02562 * 15 14 12 31 31 H 0.97004 * 120.00067 * 154.50037 * 17 16 15 32 32 H 1.08996 * 109.47589 * 300.00684 * 20 18 17 33 33 H 1.09008 * 109.46788 * 60.00104 * 20 18 17 34 34 H 1.08003 * 122.63458 * 0.02562 * 23 22 21 35 35 H 1.07999 * 127.19902 * 180.17468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4399 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4687 -2.1360 -0.0005 9 8 3.3568 -1.2008 0.0000 10 6 3.9731 -2.4053 0.1126 11 6 3.2243 -3.5514 0.3376 12 6 3.8552 -4.7767 0.4583 13 9 3.1249 -5.8921 0.6769 14 6 5.2341 -4.8628 0.3546 15 6 5.9862 -3.7252 0.1305 16 6 5.3613 -2.4929 0.0094 17 7 6.1226 -1.3390 -0.2172 18 6 7.4105 -1.2931 0.1775 19 8 7.9310 -2.2746 0.6640 20 6 8.2038 -0.0222 0.0143 21 8 9.5318 -0.2237 0.5019 22 6 10.3836 0.8334 0.4277 23 6 11.6884 0.7463 0.8766 24 6 12.4122 1.8774 0.7321 25 16 11.3439 3.0223 0.0198 26 7 10.0086 1.9803 -0.0650 27 1 -0.4850 0.8401 0.0004 28 1 2.1494 -3.4869 0.4192 29 1 5.7226 -5.8212 0.4499 30 1 7.0609 -3.7959 0.0498 31 1 5.7229 -0.5729 -0.6580 32 1 8.2418 0.2495 -1.0406 33 1 7.7266 0.7790 0.5788 34 1 12.0977 -0.1564 1.3056 35 1 13.4443 2.0321 1.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362465665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:33 Heat of formation + Delta-G solvation = -75.108123 kcal Electronic energy + Delta-G solvation = -25468.415892 eV Core-core repulsion = 21281.301462 eV Total energy + Delta-G solvation = -4187.114430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.88781 -42.00202 -41.21042 -40.28076 -38.25408 -37.57645 -35.81328 -34.50364 -32.18544 -31.54461 -31.04205 -29.12627 -27.34825 -25.40987 -24.15907 -23.26484 -21.85269 -21.56746 -20.22759 -19.81949 -19.29745 -18.84926 -18.41190 -18.06175 -17.79112 -17.19069 -16.82016 -16.62591 -16.15166 -15.96081 -15.86509 -15.61943 -15.32364 -15.21080 -15.03708 -14.47024 -14.41162 -14.27645 -13.88575 -13.74861 -13.65537 -13.17918 -12.64899 -12.46612 -12.27183 -12.25505 -12.21044 -11.72252 -11.70031 -11.46296 -10.96283 -10.87466 -10.77200 -9.68220 -9.33160 -8.90161 -8.54325 -6.28943 -0.26530 0.05243 0.34911 0.39858 0.72689 1.25086 1.33093 1.37023 1.39673 1.43916 1.50318 2.24113 2.42743 2.57173 2.72572 2.96699 3.32057 3.34141 3.71667 3.86789 3.96357 4.00771 4.10884 4.22957 4.37903 4.44980 4.55495 4.79228 4.82060 5.04478 5.10127 5.13052 5.25276 5.34052 5.54061 5.77540 5.90652 6.02444 6.25444 6.77111 6.85683 7.38231 8.56523 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003167 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.499249 B = 8839.765851 C =11336.930804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.402 4.402 8 H 0.081 0.919 9 O -0.220 6.220 10 C 0.141 3.859 11 C -0.255 4.255 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.192 4.192 15 C -0.064 4.064 16 C 0.071 3.929 17 N -0.643 5.643 18 C 0.518 3.482 19 O -0.535 6.535 20 C 0.061 3.939 21 O -0.286 6.286 22 C 0.296 3.704 23 C -0.223 4.223 24 C -0.155 4.155 25 S 0.305 5.695 26 N -0.569 5.569 27 H 0.287 0.713 28 H 0.128 0.872 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.423 0.577 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.664 5.427 -0.581 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.478 4.478 8 H 0.098 0.902 9 O -0.126 6.126 10 C 0.089 3.911 11 C -0.276 4.276 12 C 0.100 3.900 13 F -0.124 7.124 14 C -0.212 4.212 15 C -0.084 4.084 16 C -0.024 4.024 17 N -0.288 5.288 18 C 0.306 3.694 19 O -0.413 6.413 20 C -0.018 4.018 21 O -0.192 6.192 22 C 0.083 3.917 23 C -0.258 4.258 24 C -0.302 4.302 25 S 0.453 5.547 26 N -0.410 5.410 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.179 0.821 30 H 0.187 0.813 31 H 0.261 0.739 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.196 0.804 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 25.004 6.524 -1.003 25.860 hybrid contribution -0.838 -1.042 0.562 1.451 sum 24.166 5.482 -0.441 24.783 Atomic orbital electron populations 1.69737 1.07204 1.29911 1.48856 1.25310 0.95818 1.02323 0.94994 0.85264 0.79202 0.76908 0.79776 1.18156 1.20009 1.17529 1.20639 0.77548 0.96252 1.53329 0.90172 1.83457 1.21572 1.25467 1.82092 1.18729 0.90450 0.85679 0.96250 1.20978 1.01428 0.91766 1.13415 1.17544 0.89877 0.81343 1.01219 1.91437 1.78023 1.50641 1.92300 1.21000 0.90447 1.00887 1.08871 1.21306 1.01845 0.88411 0.96792 1.17058 0.86308 0.87946 1.11091 1.42941 1.10698 1.16683 1.58520 1.20444 0.81598 0.89952 0.77438 1.90618 1.69799 1.36874 1.43969 1.22269 0.81026 0.94880 1.03595 1.86286 1.21572 1.32447 1.78867 1.20665 0.90643 0.85705 0.94712 1.20582 0.90774 1.03973 1.10421 1.27015 1.07058 0.95785 1.00323 1.83954 0.96510 1.17333 1.56885 1.76397 1.26044 1.06482 1.32080 0.90370 0.85381 0.82101 0.81260 0.73919 0.86084 0.87096 0.80375 0.75031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 13.96 21.61 0.30 -52.15 16 2 C 0.02 0.82 5.49 84.83 0.47 1.29 16 3 Si 0.97 41.14 28.62 68.60 1.96 43.11 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.40 -22.01 9.90 67.92 0.67 -21.34 16 8 H 0.08 4.71 5.52 -2.91 -0.02 4.69 16 9 O -0.22 -10.59 8.01 -22.70 -0.18 -10.77 16 10 C 0.14 6.16 6.66 22.69 0.15 6.31 16 11 C -0.26 -11.17 9.11 22.42 0.20 -10.96 16 12 C 0.12 4.58 7.29 22.37 0.16 4.74 16 13 F -0.15 -5.40 17.26 44.97 0.78 -4.62 16 14 C -0.19 -6.32 10.02 22.33 0.22 -6.09 16 15 C -0.06 -2.16 8.79 22.37 0.20 -1.97 16 16 C 0.07 2.63 6.47 38.23 0.25 2.88 16 17 N -0.64 -20.15 5.28 -303.04 -1.60 -21.75 16 18 C 0.52 15.25 7.80 87.66 0.68 15.93 16 19 O -0.54 -18.59 13.42 15.97 0.21 -18.37 16 20 C 0.06 1.43 5.88 71.24 0.42 1.85 16 21 O -0.29 -7.35 9.71 -74.01 -0.72 -8.07 16 22 C 0.30 6.45 7.42 84.92 0.63 7.08 16 23 C -0.22 -3.36 10.20 21.54 0.22 -3.14 16 24 C -0.15 -1.40 11.41 67.09 0.77 -0.63 16 25 S 0.31 4.14 23.71 -56.49 -1.34 2.80 16 26 N -0.57 -12.37 11.14 -176.08 -1.96 -14.34 16 27 H 0.29 15.03 8.31 -92.70 -0.77 14.26 16 28 H 0.13 6.14 5.70 -2.91 -0.02 6.13 16 29 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.17 5.50 5.52 -2.91 -0.02 5.48 16 31 H 0.42 11.94 8.36 -92.71 -0.78 11.17 16 32 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -68.10 332.75 2.91 -65.19 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.42 Total: 23.02 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.04 Total: -4.05 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -3.26 Total: -88.23 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.69 Total: -37.21 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.96 Total: 43.11 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.34 Total: 2.80 kcal Total: -68.10 2.91 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362465665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.919 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds