Wall clock time and date at job start Tue Mar 31 2020 21:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31123 * 1 3 3 Br 1.89103 * 120.00115 * 2 1 4 4 C 1.50698 * 119.99858 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47392 * 115.00070 * 4 2 1 6 6 C 1.34766 * 120.00159 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00150 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00212 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47151 * 180.02562 * 9 8 6 11 11 C 1.38632 * 119.75213 * 269.72575 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08000 * 120.00491 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99803 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47413 * 354.99879 * 4 2 1 27 27 H 1.09002 * 109.47029 * 235.00032 * 4 2 1 28 28 H 0.97006 * 119.99374 * 359.97438 * 5 4 2 29 29 H 0.96998 * 119.99697 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.46977 * 60.00213 * 9 8 6 31 31 H 1.09001 * 109.47430 * 300.00116 * 9 8 6 32 32 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 34 34 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 36 36 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0647 -1.3051 -0.0006 5 7 2.8144 -1.4357 -1.2524 6 6 3.5666 -2.5312 -1.4763 7 8 3.6234 -3.4112 -0.6392 8 7 4.2559 -2.6516 -2.6282 9 6 5.0740 -3.8423 -2.8714 10 6 5.7360 -3.7300 -4.2205 11 6 5.0961 -4.2290 -5.3445 12 6 5.6886 -4.1268 -6.5823 13 6 6.9543 -3.5237 -6.7027 14 6 7.5759 -3.4193 -7.9684 15 1 8.3096 -2.6473 -8.1476 16 6 7.2402 -4.3161 -8.9891 17 7 6.6368 -5.4401 -8.6998 18 14 7.6538 -3.9079 -10.7644 19 1 8.9553 -4.5259 -11.1241 20 1 6.5908 -4.4390 -11.6550 21 1 7.7440 -2.4345 -10.9255 22 6 7.5971 -3.0260 -5.5543 23 6 6.9828 -3.1331 -4.3275 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.3598 -2.1317 0.0886 27 1 2.7568 -1.3254 0.8412 28 1 2.7688 -0.7338 -1.9205 29 1 4.2109 -1.9495 -3.2959 30 1 4.4405 -4.7290 -2.8498 31 1 5.8378 -3.9226 -2.0979 32 1 4.1270 -4.6961 -5.2489 33 1 5.1863 -4.5121 -7.4573 34 1 6.4045 -6.0619 -9.4071 35 1 8.5689 -2.5616 -5.6351 36 1 7.4740 -2.7514 -3.4447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365319765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:02 Heat of formation + Delta-G solvation = 1.485776 kcal Electronic energy + Delta-G solvation = -19678.630301 eV Core-core repulsion = 16401.826144 eV Total energy + Delta-G solvation = -3276.804157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77945 -37.75793 -36.38783 -34.64753 -33.51058 -33.15221 -30.44601 -30.11384 -29.35354 -27.35261 -25.89667 -23.50460 -21.07503 -20.76252 -20.13146 -20.06127 -18.08388 -17.38913 -16.61269 -15.85257 -15.41688 -15.08333 -14.58019 -14.44418 -13.99072 -13.85300 -13.69156 -13.31358 -12.82129 -12.54947 -12.05326 -12.00181 -11.76484 -11.73270 -11.59274 -11.19068 -11.09586 -10.61880 -10.56001 -10.52298 -10.06431 -9.70108 -9.57508 -9.48607 -9.22776 -9.18563 -8.49173 -7.56813 -7.45132 -6.86886 -4.46304 1.23232 1.30263 2.52674 2.94445 2.98905 3.01842 3.06761 3.25978 3.43807 3.85262 4.14285 4.43098 4.69561 5.02962 5.12537 5.37256 5.55770 5.60172 5.73972 5.81043 5.96066 6.25700 6.31038 6.36619 6.40635 6.86957 6.89008 6.97892 7.11321 7.19785 7.27103 7.51630 7.74689 7.95670 8.02269 8.19500 8.26938 8.53916 8.78853 8.82128 8.86863 10.07274 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020845 B = 0.002115 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.910907 B =13236.706305 C =13812.109175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.146 4.146 3 Br -0.059 7.059 4 C 0.185 3.815 5 N -0.750 5.750 6 C 0.701 3.299 7 O -0.600 6.600 8 N -0.732 5.732 9 C 0.203 3.797 10 C -0.244 4.244 11 C -0.080 4.080 12 C -0.170 4.170 13 C 0.117 3.883 14 C -0.459 4.459 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.787 5.787 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.230 4.230 23 C -0.069 4.069 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.397 0.603 29 H 0.396 0.604 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.282 0.718 35 H 0.093 0.907 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 12.122 13.188 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.225 4.225 3 Br 0.024 6.976 4 C 0.059 3.941 5 N -0.407 5.407 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.386 5.386 9 C 0.081 3.919 10 C -0.246 4.246 11 C -0.099 4.099 12 C -0.189 4.189 13 C 0.114 3.886 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.412 5.412 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.249 4.249 23 C -0.088 4.088 24 H 0.143 0.857 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.231 0.769 29 H 0.230 0.770 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.928 11.616 13.858 21.662 hybrid contribution -0.078 0.375 -1.464 1.514 sum -12.006 11.992 12.393 21.013 Atomic orbital electron populations 1.24310 0.93853 1.04169 0.93404 1.24245 0.96495 0.92788 1.08956 1.96795 1.76940 1.26254 1.97601 1.20098 0.94772 0.91738 0.87480 1.45088 1.52053 1.22571 1.20977 1.16039 0.78840 0.82032 0.83019 1.90893 1.69195 1.41508 1.46331 1.45722 1.50193 1.24556 1.18170 1.19809 0.92032 0.85342 0.94763 1.18993 0.98377 1.14114 0.93140 1.20561 0.97700 0.98676 0.92972 1.21304 0.95992 1.05540 0.96099 1.17668 0.90577 0.88203 0.92139 1.19652 1.20778 1.13052 0.95288 0.90298 1.25954 0.93087 0.93672 1.01603 1.69824 1.29954 1.06059 1.35338 0.86298 0.78972 0.80227 0.81278 1.19481 1.19958 1.18354 1.20969 1.00061 1.11406 0.92510 1.20418 0.94314 0.97848 0.96173 0.85652 0.86525 0.89913 0.90188 0.76906 0.76999 0.92517 0.92584 0.89395 0.86447 0.90694 0.88914 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 14.00 28.98 0.41 -0.27 16 2 C -0.15 -1.15 5.77 -36.06 -0.21 -1.36 16 3 Br -0.06 -0.51 33.73 -68.01 -2.29 -2.81 16 4 C 0.18 1.86 5.95 -5.19 -0.03 1.83 16 5 N -0.75 -8.87 5.55 -66.42 -0.37 -9.24 16 6 C 0.70 11.14 8.57 -86.92 -0.74 10.39 16 7 O -0.60 -11.75 16.34 5.29 0.09 -11.66 16 8 N -0.73 -11.61 5.55 -66.42 -0.37 -11.97 16 9 C 0.20 3.70 5.79 -5.20 -0.03 3.67 16 10 C -0.24 -5.03 5.27 -104.33 -0.55 -5.58 16 11 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 12 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 13 C 0.12 2.99 5.57 -106.83 -0.60 2.40 16 14 C -0.46 -11.73 9.05 -37.74 -0.34 -12.08 16 15 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 16 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 17 N -0.79 -19.73 10.97 55.55 0.61 -19.12 16 18 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 22 C -0.23 -5.41 9.80 -38.88 -0.38 -5.79 16 23 C -0.07 -1.46 9.67 -39.66 -0.38 -1.85 16 24 H 0.13 0.56 7.84 -52.49 -0.41 0.15 16 25 H 0.12 0.54 8.05 -52.48 -0.42 0.12 16 26 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.40 4.01 8.48 -40.82 -0.35 3.66 16 29 H 0.40 5.69 8.48 -40.82 -0.35 5.35 16 30 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.12 3.03 6.18 -52.49 -0.32 2.70 16 34 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 35 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -28.58 337.50 -10.28 -38.86 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -4.33 Total: 11.49 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.67 Total: -13.61 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.13 Total: -40.33 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.58 -10.28 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365319765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.350 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds