Wall clock time and date at job start Tue Mar 31 2020 21:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31123 * 1 3 3 Br 1.89103 * 120.00115 * 2 1 4 4 C 1.50698 * 119.99858 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47392 * 115.00070 * 4 2 1 6 6 C 1.34766 * 120.00159 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00150 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00212 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47151 * 180.02562 * 9 8 6 11 11 C 1.38632 * 119.75213 * 269.72575 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08000 * 120.00491 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99803 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47413 * 354.99879 * 4 2 1 27 27 H 1.09002 * 109.47029 * 235.00032 * 4 2 1 28 28 H 0.97006 * 119.99374 * 359.97438 * 5 4 2 29 29 H 0.96998 * 119.99697 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.46977 * 60.00213 * 9 8 6 31 31 H 1.09001 * 109.47430 * 300.00116 * 9 8 6 32 32 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 34 34 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 36 36 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0647 -1.3051 -0.0006 5 7 2.8144 -1.4357 -1.2524 6 6 3.5666 -2.5312 -1.4763 7 8 3.6234 -3.4112 -0.6392 8 7 4.2559 -2.6516 -2.6282 9 6 5.0740 -3.8423 -2.8714 10 6 5.7360 -3.7300 -4.2205 11 6 5.0961 -4.2290 -5.3445 12 6 5.6886 -4.1268 -6.5823 13 6 6.9543 -3.5237 -6.7027 14 6 7.5759 -3.4193 -7.9684 15 1 8.3096 -2.6473 -8.1476 16 6 7.2402 -4.3161 -8.9891 17 7 6.6368 -5.4401 -8.6998 18 14 7.6538 -3.9079 -10.7644 19 1 8.9553 -4.5259 -11.1241 20 1 6.5908 -4.4390 -11.6550 21 1 7.7440 -2.4345 -10.9255 22 6 7.5971 -3.0260 -5.5543 23 6 6.9828 -3.1331 -4.3275 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.3598 -2.1317 0.0886 27 1 2.7568 -1.3254 0.8412 28 1 2.7688 -0.7338 -1.9205 29 1 4.2109 -1.9495 -3.2959 30 1 4.4405 -4.7290 -2.8498 31 1 5.8378 -3.9226 -2.0979 32 1 4.1270 -4.6961 -5.2489 33 1 5.1863 -4.5121 -7.4573 34 1 6.4045 -6.0619 -9.4071 35 1 8.5689 -2.5616 -5.6351 36 1 7.4740 -2.7514 -3.4447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365319765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:01 Heat of formation + Delta-G solvation = -15.476596 kcal Electronic energy + Delta-G solvation = -19679.365845 eV Core-core repulsion = 16401.826144 eV Total energy + Delta-G solvation = -3277.539700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04025 -39.48905 -37.27971 -36.21927 -35.06607 -34.16035 -31.99492 -31.16575 -30.85033 -28.78226 -27.06591 -25.10637 -22.88902 -21.99372 -21.80073 -20.82792 -19.24477 -19.20258 -17.66977 -17.15601 -16.85938 -16.17911 -16.03396 -15.67505 -15.56049 -15.22519 -15.02465 -14.54485 -14.22465 -13.85280 -13.79769 -13.41336 -13.25867 -12.91671 -12.73014 -12.50039 -12.38485 -12.31121 -12.15487 -11.50998 -11.39645 -11.27962 -11.16156 -11.01573 -10.38960 -10.16102 -9.73212 -9.38731 -9.28012 -8.66569 -6.36329 0.64777 0.72340 0.86847 1.14666 1.39081 1.45800 1.54090 1.98525 2.17205 2.20356 2.71763 3.43874 3.49203 3.76611 4.18822 4.31238 4.35212 4.53681 4.57187 4.66461 4.68791 4.83008 5.05409 5.07182 5.14389 5.15393 5.36160 5.41435 5.43784 5.55803 5.69505 5.88518 6.04286 6.09293 6.21777 6.36970 6.68580 6.92361 7.00914 7.09494 7.58038 8.30221 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020845 B = 0.002115 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.910907 B =13236.706305 C =13812.109175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.166 4.166 3 Br -0.071 7.071 4 C 0.185 3.815 5 N -0.734 5.734 6 C 0.701 3.299 7 O -0.637 6.637 8 N -0.728 5.728 9 C 0.213 3.787 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.192 4.192 13 C 0.086 3.914 14 C -0.497 4.497 15 H 0.077 0.923 16 C 0.036 3.964 17 N -0.821 5.821 18 Si 0.981 3.019 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.067 4.067 24 H 0.143 0.857 25 H 0.132 0.868 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.407 0.593 29 H 0.405 0.595 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.289 0.711 35 H 0.098 0.902 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 13.063 13.702 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.245 4.245 3 Br 0.012 6.988 4 C 0.060 3.940 5 N -0.391 5.391 6 C 0.401 3.599 7 O -0.519 6.519 8 N -0.383 5.383 9 C 0.090 3.910 10 C -0.228 4.228 11 C -0.099 4.099 12 C -0.211 4.211 13 C 0.084 3.916 14 C -0.526 4.526 15 H 0.095 0.905 16 C -0.180 4.180 17 N -0.447 5.447 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.086 4.086 24 H 0.161 0.839 25 H 0.150 0.850 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.243 0.757 29 H 0.240 0.760 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.168 12.604 14.380 23.217 hybrid contribution 0.183 0.100 -1.434 1.449 sum -12.985 12.704 12.946 22.307 Atomic orbital electron populations 1.24626 0.93050 1.05729 0.89415 1.23985 0.96817 0.91299 1.12397 1.96789 1.77488 1.26730 1.97789 1.20152 0.94555 0.93274 0.85987 1.45002 1.50839 1.21408 1.21830 1.16093 0.78967 0.82494 0.82339 1.90872 1.70489 1.43131 1.47427 1.45405 1.50078 1.24105 1.18677 1.19563 0.92163 0.86222 0.93065 1.19194 0.97894 1.11916 0.93749 1.20753 0.98356 0.98335 0.92501 1.21258 0.96295 1.06907 0.96658 1.18003 0.91257 0.89268 0.93092 1.19891 1.22069 1.14093 0.96513 0.90521 1.26772 0.92625 0.93037 1.05556 1.69872 1.30993 1.06910 1.36886 0.85207 0.78970 0.79887 0.75770 1.18829 1.19041 1.18165 1.21156 1.00524 1.11708 0.92925 1.20683 0.94430 0.97185 0.96268 0.83935 0.84996 0.89475 0.91438 0.75696 0.75959 0.92804 0.92495 0.87711 0.88156 0.90021 0.88416 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 14.00 67.66 0.95 0.21 16 2 C -0.17 -2.25 5.77 25.52 0.15 -2.10 16 3 Br -0.07 -1.12 33.73 -20.37 -0.69 -1.81 16 4 C 0.19 3.42 5.95 85.63 0.51 3.93 16 5 N -0.73 -16.06 5.55 -482.31 -2.68 -18.74 16 6 C 0.70 21.18 8.57 179.06 1.53 22.71 16 7 O -0.64 -24.22 16.34 -3.98 -0.06 -24.29 16 8 N -0.73 -21.73 5.55 -482.31 -2.68 -24.41 16 9 C 0.21 7.40 5.79 85.63 0.50 7.90 16 10 C -0.23 -9.01 5.27 -19.67 -0.10 -9.12 16 11 C -0.08 -3.54 9.67 22.22 0.21 -3.32 16 12 C -0.19 -9.73 8.70 22.73 0.20 -9.53 16 13 C 0.09 4.52 5.57 -21.29 -0.12 4.40 16 14 C -0.50 -26.14 9.05 23.46 0.21 -25.93 16 15 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 16 C 0.04 1.76 5.14 85.26 0.44 2.20 16 17 N -0.82 -42.13 10.97 21.83 0.24 -41.89 16 18 Si 0.98 37.20 29.59 68.60 2.03 39.23 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 C -0.24 -11.51 9.80 22.73 0.22 -11.29 16 23 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 24 H 0.14 0.75 7.84 -2.91 -0.02 0.73 16 25 H 0.13 0.76 8.05 -2.91 -0.02 0.74 16 26 H 0.09 1.55 7.79 -2.39 -0.02 1.53 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.41 7.38 8.48 -92.70 -0.79 6.60 16 29 H 0.41 10.80 8.48 -92.71 -0.79 10.02 16 30 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 31 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.10 5.37 6.18 -2.91 -0.02 5.35 16 34 H 0.29 13.37 8.30 -92.71 -0.77 12.61 16 35 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -62.39 337.50 0.62 -61.77 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.45 Total: 32.63 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.91 Total: -22.50 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -5.12 Total: -85.04 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.06 Total: -24.29 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 35 Polarization: -1.12 SS G_CDS: -0.69 Total: -1.81 kcal Total: -62.39 0.62 -61.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365319765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.292 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds