Wall clock time and date at job start Tue Mar 31 2020 20:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35974 * 119.60280 * 2 1 4 4 C 1.35942 * 120.60657 * 179.97438 * 3 2 1 5 5 N 1.40190 * 120.08526 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99569 * 125.61644 * 5 4 3 7 7 O 1.21787 * 119.99899 * 355.11992 * 6 5 4 8 8 C 1.46177 * 119.99678 * 174.84694 * 6 5 4 9 9 S 1.75662 * 125.23185 * 0.29623 * 8 6 5 10 10 C 1.75473 * 92.09408 * 179.97438 * 9 8 6 11 11 C 1.32746 * 111.37349 * 0.02562 * 10 9 8 12 12 C 1.39586 * 125.22635 * 179.97438 * 8 6 5 13 13 C 1.40500 * 123.72479 * 0.02562 * 12 8 6 14 14 H 1.07999 * 120.00204 * 28.11121 * 13 12 8 15 15 C 1.40298 * 120.00152 * 208.12203 * 13 12 8 16 16 N 1.30645 * 119.99933 * 6.88284 * 15 13 12 17 17 Si 1.86801 * 120.00058 * 186.89200 * 15 13 12 18 18 H 1.48500 * 109.46841 * 59.99578 * 17 15 13 19 19 H 1.48497 * 109.47260 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47116 * 299.99774 * 17 15 13 21 21 C 1.40686 * 119.82758 * 0.28277 * 4 3 2 22 22 C 1.36376 * 119.23879 * 359.48451 * 21 4 3 23 23 Cl 1.73600 * 120.30731 * 180.24257 * 22 21 4 24 24 C 1.34635 * 119.60445 * 180.02562 * 2 1 3 25 25 O 1.22096 * 119.92548 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.47533 * 90.00177 * 1 2 3 27 27 H 1.09002 * 109.47140 * 209.99606 * 1 2 3 28 28 H 1.08995 * 109.47535 * 329.99706 * 1 2 3 29 29 H 1.08000 * 119.70064 * 0.02562 * 3 2 1 30 30 H 0.97002 * 120.00776 * 305.61301 * 5 4 3 31 31 H 1.08004 * 124.31363 * 179.97438 * 10 9 8 32 32 H 1.07992 * 122.78490 * 180.02562 * 11 10 9 33 33 H 0.97006 * 119.99798 * 180.02562 * 16 15 13 34 34 H 1.08002 * 120.38028 * 179.73941 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1823 0.0000 4 6 3.4959 1.2061 0.0005 5 7 4.1773 2.4312 0.0000 6 6 5.0985 2.6903 0.9491 7 8 5.2758 1.8990 1.8578 8 6 5.8890 3.9182 0.8845 9 16 5.7474 5.1503 -0.3596 10 6 7.0024 6.1303 0.3776 11 6 7.4808 5.5579 1.4756 12 6 6.8679 4.2950 1.8054 13 6 7.2205 3.5263 2.9274 14 1 7.1041 2.4529 2.9048 15 6 7.7237 4.1532 4.0772 16 7 7.7390 5.4572 4.1566 17 14 8.3720 3.1235 5.4946 18 1 9.5013 2.2839 5.0204 19 1 8.8437 4.0186 6.5816 20 1 7.2869 2.2495 6.0083 21 6 4.2169 -0.0020 -0.0050 22 6 3.5365 -1.1839 0.0000 23 17 4.3983 -2.6908 -0.0002 24 6 2.1301 -1.1706 -0.0005 25 8 1.5110 -2.2229 -0.0015 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.5853 2.1109 0.0004 30 1 3.9859 3.0925 -0.6834 31 1 7.3428 7.0781 -0.0127 32 1 8.2606 6.0037 2.0752 33 1 8.0873 5.8906 4.9515 34 1 5.2969 0.0066 -0.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412847403.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:53 Heat of formation + Delta-G solvation = -13.370260 kcal Electronic energy + Delta-G solvation = -23548.081153 eV Core-core repulsion = 19791.980252 eV Total energy + Delta-G solvation = -3756.100901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38004 -38.88103 -36.95991 -36.56838 -36.07987 -34.68575 -33.19051 -32.90505 -29.48271 -28.81882 -27.67817 -26.17811 -23.83570 -23.15719 -22.01312 -20.32311 -18.98382 -18.36802 -17.67203 -17.28409 -16.65636 -16.16866 -15.83124 -15.53254 -15.10430 -14.74149 -14.40130 -13.92465 -13.73582 -13.52027 -13.34384 -12.70334 -12.57713 -12.52312 -12.29214 -12.07942 -11.98699 -11.61905 -11.51833 -11.24933 -11.10068 -10.93545 -10.54876 -10.31255 -10.04682 -9.92225 -9.74495 -9.40161 -8.98413 -8.74341 -7.70851 -7.53531 -7.25459 -7.16108 -4.68279 0.65385 1.73856 1.94005 2.03072 2.80082 2.93521 2.93686 2.97408 2.99090 3.43739 3.47682 3.68363 3.75521 3.77034 4.24121 4.48696 4.64316 4.89948 4.98111 5.05240 5.08505 5.40007 5.47373 5.69706 5.92507 6.03245 6.21784 6.41343 6.72222 6.83525 6.99308 7.05746 7.16440 7.31957 7.54270 7.88576 8.11977 8.22856 8.43201 8.56999 9.29733 9.75461 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.003636 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.681311 B = 7699.844417 C = 8966.479732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.487 5.487 3 C 0.097 3.903 4 C 0.081 3.919 5 N -0.689 5.689 6 C 0.599 3.401 7 O -0.545 6.545 8 C -0.429 4.429 9 S -0.050 6.050 10 C -0.201 4.201 11 C -0.097 4.097 12 C 0.145 3.855 13 C -0.372 4.372 14 H 0.109 0.891 15 C 0.068 3.932 16 N -0.775 5.775 17 Si 0.925 3.075 18 H -0.258 1.258 19 H -0.275 1.275 20 H -0.257 1.257 21 C 0.016 3.984 22 C -0.163 4.163 23 Cl -0.034 7.034 24 C 0.520 3.480 25 O -0.542 6.542 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.402 0.598 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.290 0.710 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -1.753 -6.594 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.200 5.200 3 C -0.032 4.032 4 C -0.018 4.018 5 N -0.340 5.340 6 C 0.398 3.602 7 O -0.426 6.426 8 C -0.548 4.548 9 S 0.204 5.796 10 C -0.335 4.335 11 C -0.129 4.129 12 C 0.134 3.866 13 C -0.402 4.402 14 H 0.127 0.873 15 C -0.155 4.155 16 N -0.399 5.399 17 Si 0.748 3.252 18 H -0.182 1.182 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.008 4.008 22 C -0.194 4.194 23 Cl -0.006 7.006 24 C 0.320 3.680 25 O -0.424 6.424 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.186 0.814 30 H 0.238 0.762 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.102 0.898 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.415 -2.723 -7.042 11.305 hybrid contribution 1.208 0.188 1.502 1.937 sum -7.207 -2.535 -5.539 9.437 Atomic orbital electron populations 1.22149 0.76406 1.05171 1.03866 1.44968 1.09138 1.05756 1.60109 1.21903 0.92803 0.89789 0.98659 1.16495 0.89071 0.87237 1.08959 1.43375 1.42632 1.15139 1.32817 1.16958 0.77809 0.85454 0.80020 1.90731 1.68426 1.49127 1.34344 1.22415 1.16805 1.04560 1.11017 1.82696 1.45102 1.17758 1.34040 1.24931 1.03104 1.03437 1.01989 1.21652 1.00786 0.95748 0.94707 1.17914 0.87529 0.89789 0.91386 1.19956 1.28279 0.97102 0.94884 0.87269 1.26359 0.92650 0.95305 1.01149 1.69649 1.31048 1.10171 1.29023 0.86039 0.80353 0.80150 0.78611 1.18242 1.20025 1.18146 1.21618 1.02056 0.89620 0.87476 1.21254 0.91831 0.88941 1.17372 1.98346 1.74614 1.30467 1.97124 1.16435 0.87825 0.83379 0.80333 1.90976 1.69242 1.29161 1.53057 0.90537 0.88631 0.89452 0.81374 0.76205 0.84342 0.83975 0.89850 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.36 59.85 0.62 1.17 16 2 N -0.49 -6.08 2.99 -126.93 -0.38 -6.46 16 3 C 0.10 1.17 10.20 -16.54 -0.17 1.00 16 4 C 0.08 1.24 5.76 -83.93 -0.48 0.76 16 5 N -0.69 -11.60 5.28 -11.34 -0.06 -11.66 16 6 C 0.60 13.13 7.55 -13.07 -0.10 13.03 16 7 O -0.55 -13.62 13.77 5.11 0.07 -13.55 16 8 C -0.43 -9.86 6.50 -35.89 -0.23 -10.10 16 9 S -0.05 -0.97 22.26 -107.50 -2.39 -3.36 16 10 C -0.20 -4.00 11.06 28.85 0.32 -3.68 16 11 C -0.10 -2.18 9.02 -39.12 -0.35 -2.54 16 12 C 0.15 3.59 5.63 -106.20 -0.60 2.99 16 13 C -0.37 -9.40 8.40 -37.96 -0.32 -9.72 16 14 H 0.11 2.89 6.23 -52.49 -0.33 2.56 16 15 C 0.07 1.57 5.41 -17.28 -0.09 1.47 16 16 N -0.77 -17.80 10.98 55.57 0.61 -17.19 16 17 Si 0.93 17.83 29.57 -169.99 -5.03 12.81 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.28 -5.03 7.11 56.52 0.40 -4.62 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 21 C 0.02 0.27 8.70 -39.33 -0.34 -0.07 16 22 C -0.16 -2.65 6.34 -39.34 -0.25 -2.90 16 23 Cl -0.03 -0.54 28.55 -51.86 -1.48 -2.02 16 24 C 0.52 8.31 7.41 -15.41 -0.11 8.19 16 25 O -0.54 -9.84 16.12 4.83 0.08 -9.76 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.90 7.38 -51.93 -0.38 0.52 16 28 H 0.09 0.49 8.01 -51.93 -0.42 0.08 16 29 H 0.17 1.43 8.04 -52.49 -0.42 1.01 16 30 H 0.40 5.86 7.92 -40.82 -0.32 5.53 16 31 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 32 H 0.14 3.20 6.63 -52.49 -0.35 2.85 16 33 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 34 H 0.15 2.51 8.00 -52.49 -0.42 2.09 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -29.85 329.87 -8.34 -38.19 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.62 Total: 8.43 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.11 Total: -0.40 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.17 Total: -35.30 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.15 Total: -23.31 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.39 Total: -3.36 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.85 -8.34 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412847403.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.819 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds