Wall clock time and date at job start Tue Mar 31 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.34927 * 117.00085 * 2 1 4 4 O 1.21669 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.46122 * 120.00162 * 180.02562 * 3 2 1 6 6 C 1.36859 * 126.12582 * 179.97438 * 5 3 2 7 7 N 1.30786 * 114.00830 * 179.97438 * 6 5 3 8 8 C 1.30212 * 117.29506 * 0.02562 * 7 6 5 9 9 N 1.38135 * 124.73644 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99583 * 359.97438 * 9 8 7 11 11 O 1.21766 * 120.00413 * 359.97438 * 10 9 8 12 12 C 1.46123 * 119.99660 * 179.97438 * 10 9 8 13 13 S 1.75671 * 125.23180 * 0.02562 * 12 10 9 14 14 C 1.75469 * 92.09641 * 179.97438 * 13 12 10 15 15 C 1.32760 * 111.37380 * 359.97438 * 14 13 12 16 16 C 1.39620 * 125.23177 * 179.71390 * 12 10 9 17 17 C 1.40485 * 123.72175 * 0.04045 * 16 12 10 18 18 H 1.08001 * 119.99991 * 23.43886 * 17 16 12 19 19 C 1.40328 * 120.00096 * 203.44515 * 17 16 12 20 20 N 1.30629 * 119.99613 * 9.79125 * 19 17 16 21 21 Si 1.86799 * 120.00123 * 189.79804 * 19 17 16 22 22 H 1.48503 * 109.46888 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47283 * 119.99265 * 21 19 17 24 24 H 1.48500 * 109.47031 * 239.99543 * 21 19 17 25 25 S 1.70921 * 110.52720 * 359.97438 * 8 7 6 26 26 H 1.08998 * 109.46917 * 300.00354 * 1 2 3 27 27 H 1.08997 * 109.46730 * 60.00149 * 1 2 3 28 28 H 1.08991 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.07998 * 122.99944 * 0.23238 * 6 5 3 30 30 H 0.96994 * 120.00160 * 179.97438 * 9 8 7 31 31 H 1.07996 * 124.31069 * 179.97438 * 14 13 12 32 32 H 1.08007 * 122.78320 * 180.02562 * 15 14 13 33 33 H 0.97003 * 119.99882 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0417 1.2022 0.0000 4 8 1.3791 2.2226 -0.0005 5 6 3.5009 1.2787 -0.0006 6 6 4.2488 2.4249 -0.0011 7 7 5.5401 2.2176 -0.0010 8 6 5.9463 0.9805 -0.0009 9 7 7.2704 0.5868 -0.0003 10 6 8.2489 1.5137 -0.0003 11 8 7.9659 2.6980 -0.0012 12 6 9.6496 1.0973 0.0009 13 16 10.2121 -0.5670 0.0018 14 6 11.8938 -0.0663 0.0022 15 6 12.0048 1.2567 0.0012 16 6 10.7466 1.9609 -0.0046 17 6 10.6367 3.3614 -0.0113 18 1 9.7393 3.8344 0.3595 19 6 11.6927 4.1458 -0.4999 20 7 12.6928 3.5804 -1.1217 21 14 11.6684 5.9983 -0.2611 22 1 10.4344 6.3872 0.4680 23 1 12.8589 6.4118 0.5243 24 1 11.6921 6.6685 -1.5860 25 16 4.6125 -0.0883 -0.0003 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.8117 3.4124 0.0025 30 1 7.4959 -0.3565 0.0001 31 1 12.7318 -0.7476 0.0032 32 1 12.9586 1.7635 0.0009 33 1 13.4230 4.1226 -1.4591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413984742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:43 Heat of formation + Delta-G solvation = -40.643151 kcal Electronic energy + Delta-G solvation = -22916.505232 eV Core-core repulsion = 19161.265396 eV Total energy + Delta-G solvation = -3755.239835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54884 -39.91179 -38.21023 -36.56632 -36.24337 -34.20755 -33.28802 -30.39606 -29.22209 -27.83810 -26.83725 -25.08953 -23.10682 -22.26866 -21.10226 -19.67208 -18.94745 -18.92534 -18.01728 -17.17872 -16.56543 -16.43115 -15.86976 -15.81426 -15.30163 -15.14862 -14.55663 -14.23850 -13.85460 -13.65313 -13.49854 -13.09139 -12.65748 -12.44593 -12.29619 -12.05956 -11.62463 -11.49879 -11.36403 -11.22864 -10.90761 -10.78409 -10.55190 -10.44782 -10.33207 -9.87332 -9.66654 -9.42993 -9.36656 -8.57794 -8.05728 -7.70375 -7.35250 -7.27059 -4.76880 0.30334 0.95934 1.61826 1.92307 2.37064 2.63901 2.84111 2.90404 2.90748 3.00779 3.13148 3.30647 3.43667 3.61910 3.70781 4.18864 4.64359 4.90687 4.95393 5.00890 5.03207 5.26136 5.38577 5.84550 5.95358 6.16410 6.22324 6.55388 6.65330 6.93808 6.98958 7.23662 7.35957 7.60985 7.65600 8.05860 8.13220 8.34439 8.47864 9.15139 9.62354 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.002997 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.631327 B = 9340.241227 C =10912.468235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.557 3.443 4 O -0.509 6.509 5 C -0.351 4.351 6 C 0.194 3.806 7 N -0.493 5.493 8 C 0.326 3.674 9 N -0.629 5.629 10 C 0.580 3.420 11 O -0.488 6.488 12 C -0.433 4.433 13 S -0.057 6.057 14 C -0.195 4.195 15 C -0.098 4.098 16 C 0.141 3.859 17 C -0.360 4.360 18 H 0.116 0.884 19 C 0.066 3.934 20 N -0.764 5.764 21 Si 0.927 3.073 22 H -0.250 1.250 23 H -0.267 1.267 24 H -0.267 1.267 25 S 0.163 5.837 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.190 0.810 30 H 0.416 0.584 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -7.458 1.335 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.402 3.598 4 O -0.399 6.399 5 C -0.476 4.476 6 C 0.031 3.969 7 N -0.214 5.214 8 C -0.040 4.040 9 N -0.277 5.277 10 C 0.378 3.622 11 O -0.364 6.364 12 C -0.552 4.552 13 S 0.197 5.803 14 C -0.329 4.329 15 C -0.130 4.130 16 C 0.130 3.870 17 C -0.390 4.390 18 H 0.133 0.867 19 C -0.158 4.158 20 N -0.387 5.387 21 Si 0.749 3.251 22 H -0.173 1.173 23 H -0.192 1.192 24 H -0.192 1.192 25 S 0.415 5.585 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.207 0.793 30 H 0.253 0.747 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.448 -8.408 1.210 13.465 hybrid contribution 0.499 2.249 -0.100 2.306 sum -9.949 -6.159 1.110 11.753 Atomic orbital electron populations 1.22891 0.76710 1.03613 1.02491 1.86190 1.23350 1.32649 1.84834 1.19244 0.86528 0.81507 0.72553 1.90891 1.65816 1.35679 1.47491 1.24256 0.94305 0.96707 1.32292 1.22526 0.85980 0.98938 0.89481 1.66641 1.14207 1.17457 1.23084 1.24410 0.92038 0.92248 0.95258 1.43758 1.00652 1.11940 1.71333 1.17185 0.83111 0.84712 0.77231 1.90811 1.81605 1.15549 1.48427 1.22216 0.92952 0.93100 1.46945 1.82697 1.01652 1.10407 1.85580 1.24925 0.97795 0.99009 1.11147 1.21722 0.99911 0.92277 0.99092 1.17910 0.88342 0.93353 0.87399 1.20235 1.01154 0.90654 1.26965 0.86654 1.26477 0.93544 1.03589 0.92209 1.69656 1.07016 1.39697 1.22365 0.85903 0.80214 0.79283 0.79662 1.17267 1.19228 1.19229 1.83878 0.95229 1.08274 1.71084 0.92099 0.92089 0.88049 0.79336 0.74662 0.84150 0.83478 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.45 101.05 1.06 1.37 16 2 O -0.35 -4.31 10.36 -41.11 -0.43 -4.73 16 3 C 0.56 8.01 7.90 33.89 0.27 8.27 16 4 O -0.51 -8.19 16.64 -19.40 -0.32 -8.51 16 5 C -0.35 -5.23 6.51 -36.92 -0.24 -5.47 16 6 C 0.19 3.16 11.15 -18.50 -0.21 2.95 16 7 N -0.49 -9.61 8.54 -14.68 -0.13 -9.74 16 8 C 0.33 5.79 7.97 -87.71 -0.70 5.09 16 9 N -0.63 -11.78 5.36 -14.51 -0.08 -11.86 16 10 C 0.58 13.54 7.72 -13.10 -0.10 13.44 16 11 O -0.49 -12.89 13.04 5.13 0.07 -12.83 16 12 C -0.43 -10.21 6.50 -35.91 -0.23 -10.44 16 13 S -0.06 -1.12 22.25 -107.50 -2.39 -3.51 16 14 C -0.19 -3.89 11.07 28.86 0.32 -3.57 16 15 C -0.10 -2.21 9.04 -39.12 -0.35 -2.56 16 16 C 0.14 3.52 5.67 -106.20 -0.60 2.92 16 17 C -0.36 -9.13 8.52 -37.95 -0.32 -9.46 16 18 H 0.12 3.10 6.04 -52.49 -0.32 2.78 16 19 C 0.07 1.50 5.39 -17.28 -0.09 1.41 16 20 N -0.76 -17.25 10.82 55.57 0.60 -16.65 16 21 Si 0.93 17.56 29.57 -169.99 -5.03 12.53 16 22 H -0.25 -4.93 7.11 56.52 0.40 -4.52 16 23 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 S 0.16 2.21 23.07 -107.50 -2.48 -0.27 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.19 2.69 8.06 -52.49 -0.42 2.27 16 30 H 0.42 6.58 7.89 -40.82 -0.32 6.26 16 31 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.15 3.28 6.41 -52.48 -0.34 2.95 16 33 H 0.29 5.84 8.29 -40.82 -0.34 5.51 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -29.56 328.01 -8.67 -38.23 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.22 Total: 8.45 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.21 Total: 3.95 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.40 Total: -38.25 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.68 Total: -26.07 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -4.87 Total: -3.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.56 -8.67 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413984742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.412 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds