Wall clock time and date at job start Tue Mar 31 2020 20:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31576 * 122.22775 * 2 1 4 4 C 1.29978 * 117.13258 * 179.97438 * 3 2 1 5 5 N 1.38760 * 125.36701 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00421 * 180.02562 * 5 4 3 7 7 O 1.21573 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.47776 * 120.00212 * 179.72316 * 6 5 4 9 9 C 1.39784 * 121.20013 * 359.97438 * 8 6 5 10 10 N 1.31862 * 119.70667 * 179.71058 * 9 8 6 11 11 N 1.28220 * 122.54801 * 0.58263 * 10 9 8 12 12 C 1.31655 * 122.64624 * 359.70102 * 11 10 9 13 13 C 1.39387 * 119.85963 * 359.97438 * 12 11 10 14 14 O 1.35518 * 121.18233 * 179.97438 * 13 12 11 15 15 S 1.76142 * 109.27138 * 0.23324 * 4 3 2 16 16 C 1.34675 * 122.22900 * 179.97438 * 2 1 3 17 17 S 1.76200 * 125.93274 * 0.06666 * 16 2 1 18 18 C 1.76194 * 100.00022 * 179.97438 * 17 16 2 19 19 H 1.07999 * 120.00395 * 359.97438 * 18 17 16 20 20 C 1.38434 * 120.00056 * 179.97438 * 18 17 16 21 21 N 1.31809 * 119.99689 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00418 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46958 * 89.99810 * 22 20 18 24 24 H 1.48502 * 109.47507 * 210.00002 * 22 20 18 25 25 H 1.48508 * 109.46915 * 330.00141 * 22 20 18 26 26 H 1.08993 * 109.47127 * 90.02587 * 1 2 3 27 27 H 1.08997 * 109.47304 * 210.02626 * 1 2 3 28 28 H 1.09001 * 109.46830 * 330.02336 * 1 2 3 29 29 H 0.97000 * 119.99467 * 0.02562 * 5 4 3 30 30 H 1.07991 * 120.14640 * 359.97438 * 9 8 6 31 31 H 1.08002 * 120.07256 * 179.97438 * 12 11 10 32 32 H 0.96698 * 113.99519 * 270.02077 * 14 13 12 33 33 H 0.97003 * 119.99562 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5033 0.9976 0.0005 5 7 4.4038 2.0533 0.0001 6 6 5.7291 1.8087 0.0002 7 8 6.1358 0.6630 0.0011 8 6 6.6881 2.9331 -0.0064 9 6 6.2483 4.2599 -0.0134 10 7 7.1298 5.2405 -0.0134 11 7 8.3947 5.0310 -0.0182 12 6 8.9143 3.8213 -0.0177 13 6 8.0774 2.7066 -0.0113 14 8 8.5833 1.4494 -0.0111 15 16 3.9347 -0.7102 -0.0057 16 6 2.2252 -1.1392 0.0005 17 16 1.5698 -2.7748 -0.0004 18 6 3.0666 -3.7043 0.0001 19 1 4.0188 -3.1946 0.0004 20 6 3.0222 -5.0879 0.0002 21 7 1.8602 -5.7099 0.0003 22 14 4.6091 -6.0734 0.0000 23 1 5.0297 -6.3345 1.4001 24 1 4.3899 -7.3646 -0.7000 25 1 5.6692 -5.3045 -0.7002 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0793 2.9675 -0.0003 30 1 5.1912 4.4808 -0.0145 31 1 9.9866 3.6929 -0.0223 32 1 8.7260 1.0829 -0.8945 33 1 1.8291 -6.6795 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417630993.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:46 Heat of formation + Delta-G solvation = 29.427035 kcal Electronic energy + Delta-G solvation = -23021.673387 eV Core-core repulsion = 19301.764774 eV Total energy + Delta-G solvation = -3719.908613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.029 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87727 -40.04418 -38.68246 -38.14783 -35.06903 -33.39896 -32.89805 -32.20116 -30.53717 -27.24209 -26.43429 -25.83767 -24.89094 -23.48437 -21.54882 -20.24705 -19.29392 -18.71855 -18.50957 -17.52279 -17.24787 -16.54766 -15.93919 -15.80025 -15.62415 -15.17761 -15.12024 -14.69064 -14.49944 -14.05547 -14.03330 -13.27730 -12.76738 -12.67696 -12.23015 -11.95543 -11.46447 -11.34514 -11.32309 -11.11563 -11.05521 -10.75585 -10.71682 -10.53837 -10.33248 -10.25754 -9.95269 -9.62866 -9.18494 -8.85599 -8.75551 -7.91351 -6.67497 -6.59779 -4.35555 -0.30350 0.22113 1.30265 1.74077 2.32594 2.35431 2.57357 2.95372 3.00487 3.05316 3.12225 3.17265 3.27106 3.50691 3.53759 3.75121 3.90885 4.03684 4.11848 4.69883 4.75650 4.87996 4.95193 5.06645 5.08993 5.41943 5.89820 5.98454 6.17456 6.35090 6.36670 6.78562 6.89635 6.98580 7.25712 7.65900 7.96387 8.08445 8.39664 8.80950 10.38093 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.003369 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.405852 B = 8307.860036 C =10161.530161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.019 3.981 3 N -0.468 5.468 4 C 0.177 3.823 5 N -0.604 5.604 6 C 0.553 3.447 7 O -0.478 6.478 8 C -0.164 4.164 9 C 0.091 3.909 10 N -0.249 5.249 11 N -0.208 5.208 12 C 0.019 3.981 13 C 0.185 3.815 14 O -0.461 6.461 15 S 0.205 5.795 16 C -0.249 4.249 17 S 0.159 5.841 18 C -0.558 4.558 19 H 0.089 0.911 20 C 0.083 3.917 21 N -0.861 5.861 22 Si 0.925 3.075 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.413 0.587 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.412 0.588 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 15.115 -1.776 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.189 5.189 4 C -0.193 4.193 5 N -0.253 5.253 6 C 0.337 3.663 7 O -0.351 6.351 8 C -0.178 4.178 9 C -0.074 4.074 10 N -0.091 5.091 11 N -0.051 5.051 12 C -0.148 4.148 13 C 0.126 3.874 14 O -0.272 6.272 15 S 0.448 5.552 16 C -0.486 4.486 17 S 0.410 5.590 18 C -0.707 4.707 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.494 5.494 22 Si 0.750 3.250 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.189 1.189 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.252 0.748 30 H 0.197 0.803 31 H 0.204 0.796 32 H 0.274 0.726 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.813 15.103 -1.202 17.527 hybrid contribution 0.885 -1.255 -0.406 1.588 sum 9.697 13.848 -1.608 16.982 Atomic orbital electron populations 1.20126 0.87899 1.02221 1.01880 1.19033 0.96748 0.84467 1.12169 1.65783 1.02698 1.32522 1.17904 1.23590 0.89836 0.92569 1.13291 1.42066 1.04010 1.08428 1.70811 1.17676 0.81188 0.88615 0.78823 1.90849 1.76787 1.20826 1.46601 1.21510 0.94727 0.95256 1.06332 1.24634 1.02632 0.87922 0.92181 1.72951 0.96488 1.29340 1.10310 1.72802 1.06070 1.20559 1.05629 1.24976 1.03161 0.88501 0.98143 1.19693 0.89539 0.87254 0.90939 1.84704 1.83664 1.24567 1.34314 1.85815 1.01827 0.95079 1.72443 1.28820 1.01198 1.06868 1.11676 1.83104 1.10957 0.84253 1.80654 1.23283 0.93599 0.94088 1.59756 0.89277 1.25040 0.98352 0.96674 0.92796 1.70009 1.24453 1.10451 1.44474 0.86019 0.81130 0.78775 0.79093 1.19548 1.20216 1.18871 0.91792 0.90995 0.91833 0.74844 0.80335 0.79572 0.72626 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.02 36.01 0.36 -0.67 16 2 C 0.02 0.38 6.73 -83.96 -0.57 -0.19 16 3 N -0.47 -8.89 10.55 -9.81 -0.10 -9.00 16 4 C 0.18 3.21 8.39 -87.30 -0.73 2.47 16 5 N -0.60 -8.10 5.35 -12.68 -0.07 -8.17 16 6 C 0.55 7.35 7.75 -12.36 -0.10 7.25 16 7 O -0.48 -7.95 12.90 -15.40 -0.20 -8.14 16 8 C -0.16 -1.64 5.93 -104.47 -0.62 -2.26 16 9 C 0.09 0.78 10.84 -16.96 -0.18 0.60 16 10 N -0.25 -2.55 11.47 30.78 0.35 -2.20 16 11 N -0.21 -2.08 11.46 30.66 0.35 -1.73 16 12 C 0.02 0.14 11.29 -17.20 -0.19 -0.05 16 13 C 0.18 1.67 6.81 -38.20 -0.26 1.41 16 14 O -0.46 -4.19 11.87 -38.95 -0.46 -4.65 16 15 S 0.20 4.29 18.34 -107.50 -1.97 2.31 16 16 C -0.25 -5.51 6.67 29.47 0.20 -5.31 16 17 S 0.16 3.87 20.74 -107.50 -2.23 1.64 16 18 C -0.56 -14.77 9.26 30.80 0.29 -14.48 16 19 H 0.09 2.33 5.97 -52.49 -0.31 2.02 16 20 C 0.08 2.15 5.49 -17.49 -0.10 2.06 16 21 N -0.86 -23.18 13.22 55.47 0.73 -22.45 16 22 Si 0.93 20.13 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.41 4.00 6.97 -40.82 -0.28 3.72 16 30 H 0.18 0.96 6.53 -52.49 -0.34 0.61 16 31 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.41 2.04 9.06 45.56 0.41 2.45 16 33 H 0.28 6.94 8.32 -40.82 -0.34 6.60 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -33.04 324.55 -6.95 -39.98 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -1.31 Total: 1.58 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.90 Total: -9.17 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 1.27 Total: -43.54 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.66 Total: -12.80 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -4.20 Total: 3.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.04 -6.95 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417630993.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.411 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds