Wall clock time and date at job start Tue Mar 31 2020 20:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35916 * 117.00129 * 2 1 4 4 C 1.38752 * 120.04516 * 0.28464 * 3 2 1 5 5 C 1.38118 * 119.95369 * 180.23142 * 4 3 2 6 6 C 1.38373 * 120.04439 * 359.78164 * 5 4 3 7 7 Br 1.89098 * 119.95291 * 179.97438 * 6 5 4 8 8 C 1.38316 * 120.08835 * 359.96449 * 6 5 4 9 9 C 1.38160 * 120.05296 * 359.97438 * 8 6 5 10 10 C 1.50691 * 120.02824 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.47131 * 264.99930 * 10 9 8 12 12 N 1.30731 * 126.40697 * 89.97017 * 11 10 9 13 13 N 1.28404 * 110.67587 * 180.02562 * 12 11 10 14 14 N 1.28930 * 110.32359 * 0.02562 * 13 12 11 15 15 N 1.35565 * 126.40841 * 269.97467 * 11 10 9 16 16 C 1.37608 * 127.42673 * 359.97438 * 15 11 10 17 17 H 1.08009 * 119.99955 * 0.02562 * 16 15 11 18 18 C 1.39022 * 120.00170 * 180.02562 * 16 15 11 19 19 N 1.31230 * 119.99889 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47306 * 59.99554 * 20 18 16 22 22 H 1.48499 * 109.46961 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47116 * 299.99701 * 20 18 16 24 24 H 1.09004 * 109.47238 * 299.99604 * 1 2 3 25 25 H 1.08998 * 109.47820 * 59.99349 * 1 2 3 26 26 H 1.08995 * 109.47607 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.02465 * 359.96548 * 4 3 2 28 28 H 1.07994 * 119.97788 * 179.76739 * 5 4 3 29 29 H 1.08004 * 119.97402 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.47589 * 144.99919 * 10 9 8 31 31 H 1.09007 * 109.47517 * 24.99268 * 10 9 8 32 32 H 0.96999 * 119.99645 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3753 0.0060 5 6 1.9203 3.6049 0.0011 6 6 3.3022 3.6762 -0.0051 7 35 4.1607 5.3610 -0.0125 8 6 4.0564 2.5167 -0.0058 9 6 3.4312 1.2847 0.0004 10 6 4.2533 0.0218 0.0002 11 6 4.4174 -0.4706 -1.4146 12 7 5.3796 -0.1522 -2.2404 13 7 5.2235 -0.7449 -3.3687 14 7 4.1622 -1.4766 -3.3470 15 7 3.5949 -1.3267 -2.0692 16 6 2.4509 -1.9204 -1.5871 17 1 2.1212 -1.7181 -0.5787 18 6 1.7193 -2.7805 -2.3982 19 7 2.1196 -3.0259 -3.6236 20 14 0.1660 -3.5858 -1.7440 21 1 -0.8119 -2.5362 -1.3602 22 1 -0.4244 -4.4505 -2.7971 23 1 0.4990 -4.4106 -0.5549 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2127 2.3201 0.0101 28 1 1.3332 4.5113 0.0020 29 1 5.1348 2.5745 -0.0102 30 1 3.7487 -0.7404 0.5940 31 1 5.2341 0.2266 0.4296 32 1 1.6090 -3.6257 -4.1896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421367477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:39 Heat of formation + Delta-G solvation = 79.249718 kcal Electronic energy + Delta-G solvation = -21425.550857 eV Core-core repulsion = 18048.578455 eV Total energy + Delta-G solvation = -3376.972403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.94114 -41.19845 -38.47039 -36.46227 -35.04596 -33.43365 -32.62029 -31.79170 -29.95416 -28.63885 -27.94051 -27.47145 -24.00788 -23.16477 -22.83061 -21.58876 -19.95493 -18.94111 -17.86041 -17.13892 -16.92252 -16.61007 -16.22406 -16.00900 -15.51138 -15.36603 -14.88048 -14.41222 -14.13374 -13.90506 -13.86314 -13.22669 -12.97046 -12.94616 -12.87895 -12.51802 -12.35783 -12.11536 -12.07888 -11.94405 -11.73475 -11.21708 -11.19908 -11.02367 -10.71727 -10.29474 -9.94479 -9.04262 -8.74055 -6.64155 0.18096 0.23301 0.69940 0.94538 1.35386 1.56300 1.59344 2.00632 2.02900 2.32369 2.53447 2.68280 2.92733 3.69334 3.74971 3.94200 4.14054 4.18916 4.30937 4.42128 4.47867 4.50159 4.71114 4.79571 4.80845 4.89649 5.03810 5.09626 5.20297 5.23084 5.45401 5.56006 5.66829 6.02778 6.45062 6.55164 7.04834 8.26421 8.52054 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.004379 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.545689 B = 6391.908279 C = 7540.287078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.147 3.853 4 C -0.205 4.205 5 C -0.050 4.050 6 C -0.142 4.142 7 Br -0.050 7.050 8 C -0.046 4.046 9 C -0.123 4.123 10 C 0.043 3.957 11 C 0.064 3.936 12 N -0.363 5.363 13 N -0.185 5.185 14 N -0.170 5.170 15 N -0.158 5.158 16 C -0.293 4.293 17 H 0.172 0.828 18 C -0.004 4.004 19 N -0.803 5.803 20 Si 1.007 2.993 21 H -0.222 1.222 22 H -0.279 1.279 23 H -0.246 1.246 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 11.353 14.133 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.221 6.221 3 C 0.100 3.900 4 C -0.224 4.224 5 C -0.070 4.070 6 C -0.221 4.221 7 Br 0.035 6.965 8 C -0.066 4.066 9 C -0.126 4.126 10 C 0.003 3.997 11 C -0.203 4.203 12 N -0.226 5.226 13 N -0.175 5.175 14 N -0.155 5.155 15 N 0.062 4.938 16 C -0.434 4.434 17 H 0.188 0.812 18 C -0.220 4.220 19 N -0.431 5.431 20 Si 0.823 3.177 21 H -0.145 1.145 22 H -0.204 1.204 23 H -0.170 1.170 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.181 0.819 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.345 11.686 12.615 19.114 hybrid contribution -1.070 -0.906 0.103 1.406 sum -9.415 10.780 12.719 19.148 Atomic orbital electron populations 1.23453 0.77072 1.05438 1.02434 1.86244 1.22994 1.25562 1.87254 1.19195 0.91746 0.85796 0.93235 1.21474 1.01557 0.90827 1.08586 1.21148 0.92022 0.98775 0.95050 1.21658 0.95473 0.91288 1.13717 1.96636 1.79906 1.21905 1.98026 1.20911 1.00499 0.89756 0.95391 1.19101 0.91348 0.94923 1.07239 1.18538 1.01165 0.94232 0.85798 1.25017 0.93204 1.01996 1.00038 1.73558 1.24975 1.25235 0.98788 1.77498 1.14137 1.10078 1.15777 1.82902 1.07822 1.25199 0.99555 1.47818 1.15853 1.22473 1.07637 1.21555 0.96913 1.22540 1.02379 0.81188 1.27221 1.03763 0.96287 0.94696 1.70295 1.37754 1.27354 1.07714 0.84886 0.74886 0.79061 0.78855 1.14460 1.20387 1.16987 0.89745 0.92575 0.87317 0.81852 0.82493 0.84335 0.88178 0.87349 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.31 -9.21 5.80 -92.61 -0.54 -9.75 16 3 C 0.15 4.47 6.66 22.50 0.15 4.62 16 4 C -0.21 -4.97 9.04 22.36 0.20 -4.77 16 5 C -0.05 -1.19 9.78 22.27 0.22 -0.97 16 6 C -0.14 -3.85 6.22 22.32 0.14 -3.71 16 7 Br -0.05 -1.19 33.70 -20.37 -0.69 -1.87 16 8 C -0.05 -1.41 9.42 22.27 0.21 -1.20 16 9 C -0.12 -4.12 5.13 -19.77 -0.10 -4.22 16 10 C 0.04 1.58 5.36 29.10 0.16 1.73 16 11 C 0.06 3.15 7.36 137.90 1.01 4.17 16 12 N -0.36 -20.05 12.15 -50.00 -0.61 -20.65 16 13 N -0.19 -11.28 13.38 37.02 0.50 -10.78 16 14 N -0.17 -10.50 11.90 37.02 0.44 -10.06 16 15 N -0.16 -8.58 3.77 -181.99 -0.69 -9.27 16 16 C -0.29 -13.88 8.97 83.97 0.75 -13.13 16 17 H 0.17 6.89 4.50 -2.91 -0.01 6.88 16 18 C 0.00 -0.17 5.50 84.97 0.47 0.30 16 19 N -0.80 -42.28 11.93 21.66 0.26 -42.02 16 20 Si 1.01 31.51 29.15 68.60 2.00 33.51 16 21 H -0.22 -5.56 6.04 99.48 0.60 -4.96 16 22 H -0.28 -8.94 7.11 99.48 0.71 -8.24 16 23 H -0.25 -7.19 7.11 99.48 0.71 -6.48 16 24 H 0.08 1.20 7.65 -2.39 -0.02 1.18 16 25 H 0.06 1.16 7.67 -2.39 -0.02 1.14 16 26 H 0.11 2.07 6.61 -2.39 -0.02 2.06 16 27 H 0.16 2.88 6.30 -2.91 -0.02 2.86 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.10 3.38 7.07 -2.39 -0.02 3.37 16 31 H 0.11 3.50 8.05 -2.38 -0.02 3.48 16 32 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 Total: -1.00 -71.60 297.55 6.07 -65.52 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.08 Total: 21.23 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 4.32 Total: -15.86 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -0.10 Total: -92.79 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.54 Total: -9.75 kcal Atomic # 14 Polarization: 31.51 SS G_CDS: 2.00 Total: 33.51 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -0.69 Total: -1.87 kcal Total: -71.60 6.07 -65.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421367477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.774 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds