Wall clock time and date at job start Tue Mar 31 2020 20:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46709 * 2 1 4 4 C 1.50700 * 109.47368 * 239.99601 * 2 1 3 5 5 H 1.08001 * 119.99746 * 239.99883 * 4 2 1 6 6 C 1.37872 * 119.99955 * 59.99590 * 4 2 1 7 7 N 1.31523 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00253 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46645 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47173 * 120.00030 * 8 6 4 11 11 H 1.48499 * 109.47565 * 240.00376 * 8 6 4 12 12 N 1.46505 * 109.46875 * 119.99288 * 2 1 3 13 13 C 1.34770 * 119.99909 * 275.00194 * 12 2 1 14 14 O 1.21575 * 120.00462 * 0.02562 * 13 12 2 15 15 N 1.34785 * 119.99656 * 180.02562 * 13 12 2 16 16 C 1.39410 * 119.99833 * 185.08721 * 15 13 12 17 17 C 1.39334 * 119.60722 * 174.92416 * 16 15 13 18 18 C 1.38341 * 119.33491 * 180.26267 * 17 16 15 19 19 C 1.38810 * 118.58162 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 120.40904 * 179.97438 * 19 18 17 21 21 C 1.39388 * 119.17925 * 0.02562 * 19 18 17 22 22 C 1.43204 * 119.70767 * 180.02562 * 21 19 18 23 23 N 7.40222 * 91.21224 * 53.02757 * 2 1 3 24 24 N 1.32039 * 119.60983 * 355.20028 * 16 15 13 25 25 H 1.09010 * 109.46491 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47492 * 299.99931 * 1 2 3 27 27 H 1.08994 * 109.47211 * 60.00854 * 1 2 3 28 28 H 0.97002 * 119.99829 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99635 * 95.00786 * 12 2 1 30 30 H 0.96996 * 120.00082 * 5.08758 * 15 13 12 31 31 H 1.07992 * 120.33069 * 0.25437 * 17 16 15 32 32 H 1.08007 * 120.70957 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1476 -2.2864 -3.6035 10 1 1.1679 -1.5870 -4.8163 11 1 3.1473 -0.1860 -4.8160 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3571 14 8 1.8574 1.1615 2.4118 15 7 2.5967 -0.6532 3.4576 16 6 2.6296 0.0125 4.6821 17 6 2.9948 -0.6820 5.8335 18 6 3.0203 -0.0172 7.0464 19 6 2.6782 1.3278 7.0739 20 35 2.6948 2.2865 8.7038 21 6 2.3211 1.9626 5.8855 22 6 1.9666 3.3500 5.9007 23 7 1.6866 4.4509 5.9125 24 7 2.3090 1.2921 4.7378 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.2491 -1.6316 1.1528 30 1 2.8974 -1.5734 3.3976 31 1 3.2552 -1.7286 5.7796 32 1 3.2997 -0.5339 7.9528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434735824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:27 Heat of formation + Delta-G solvation = 61.205724 kcal Electronic energy + Delta-G solvation = -19982.354749 eV Core-core repulsion = 16604.599900 eV Total energy + Delta-G solvation = -3377.754849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07796 -39.22969 -36.70308 -35.40300 -34.45356 -33.28383 -32.48449 -31.83345 -29.66099 -28.42139 -25.38635 -25.27968 -23.63320 -21.51545 -20.21512 -19.79377 -18.44547 -17.01718 -16.55813 -16.28963 -15.73117 -15.56346 -15.02260 -14.48481 -14.15079 -13.97864 -13.40820 -13.26716 -13.07465 -12.88062 -12.68824 -12.44881 -12.04597 -11.69812 -11.13282 -11.02627 -10.82209 -10.78079 -10.41484 -10.29805 -10.27570 -10.16374 -10.14321 -9.15707 -9.08942 -8.61459 -8.48251 -7.96172 -6.16571 -4.26376 0.17134 0.77041 1.15512 2.29673 2.61237 2.75980 3.21045 3.28596 3.30635 3.32790 3.50611 3.90749 4.25922 4.31224 4.36262 4.47319 4.78129 4.91493 5.16190 5.29800 5.35373 5.68339 6.42958 6.61978 6.86157 6.93086 7.11313 7.24542 7.37589 7.45258 7.59113 7.78472 7.93616 8.10531 8.63553 8.77345 9.13643 9.41701 10.89461 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.002472 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.819786 B =11323.867309 C =11909.493765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.716 5.716 13 C 0.678 3.322 14 O -0.531 6.531 15 N -0.669 5.669 16 C 0.417 3.583 17 C -0.187 4.187 18 C -0.013 4.013 19 C -0.153 4.153 20 Br -0.027 7.027 21 C 0.267 3.733 22 C 0.262 3.738 23 N -0.366 5.366 24 N -0.433 5.433 25 H 0.026 0.974 26 H 0.016 0.984 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.386 0.614 30 H 0.415 0.585 31 H 0.154 0.846 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -6.481 23.587 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.369 5.369 13 C 0.377 3.623 14 O -0.402 6.402 15 N -0.317 5.317 16 C 0.180 3.820 17 C -0.213 4.213 18 C -0.040 4.040 19 C -0.240 4.240 20 Br 0.058 6.942 21 C 0.124 3.876 22 C -0.056 4.056 23 N -0.042 5.042 24 N -0.150 5.150 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.252 0.748 31 H 0.172 0.828 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.441 -2.805 23.080 23.670 hybrid contribution 0.870 -2.534 -0.689 2.767 sum 5.311 -5.339 22.391 23.623 Atomic orbital electron populations 1.22108 0.98430 0.99118 1.01055 1.18728 0.90910 0.93804 0.78654 0.93163 1.21218 1.32620 1.13335 0.90168 0.91968 1.24889 0.94796 0.94952 0.99081 1.69918 1.35716 1.22335 1.23898 0.86372 0.78597 0.79465 0.82511 1.19747 1.20858 1.20853 1.45923 1.68564 1.13315 1.09065 1.16319 0.79791 0.85859 0.80323 1.91042 1.53383 1.13091 1.82705 1.43217 1.66063 1.16566 1.05860 1.18185 0.90464 0.87644 0.85675 1.21704 1.06502 1.02140 0.90941 1.21230 0.93117 0.90956 0.98697 1.22598 1.12025 0.96961 0.92410 1.96774 1.97817 1.74092 1.25549 1.16041 0.96399 0.87325 0.87801 1.24692 0.95055 0.91735 0.94088 1.81182 1.05736 1.10898 1.06388 1.67791 1.15441 1.07255 1.24502 0.95469 0.96539 0.89039 0.92526 0.78174 0.74844 0.82798 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.28 6.92 2.56 -69.08 -0.18 6.75 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.70 8.73 -34.44 -0.30 -14.00 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.72 -13.87 5.07 -59.81 -0.30 -14.18 16 13 C 0.68 12.88 8.49 -86.92 -0.74 12.15 16 14 O -0.53 -12.71 14.26 5.30 0.08 -12.63 16 15 N -0.67 -8.63 5.40 -15.80 -0.09 -8.72 16 16 C 0.42 5.27 7.42 -154.85 -1.15 4.12 16 17 C -0.19 -1.41 9.94 -39.14 -0.39 -1.80 16 18 C -0.01 -0.09 9.92 -39.33 -0.39 -0.48 16 19 C -0.15 -1.56 6.27 -38.94 -0.24 -1.81 16 20 Br -0.03 -0.25 32.64 -68.01 -2.22 -2.47 16 21 C 0.27 3.73 6.58 -85.04 -0.56 3.17 16 22 C 0.26 4.10 14.39 -22.47 -0.32 3.78 16 23 N -0.37 -6.16 18.54 41.84 0.78 -5.38 16 24 N -0.43 -7.05 7.79 -10.24 -0.08 -7.13 16 25 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 6.10 8.56 -40.82 -0.35 5.75 16 30 H 0.41 3.36 8.72 -40.82 -0.36 3.01 16 31 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.16 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -33.37 314.12 -8.16 -41.53 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.65 Total: 2.76 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -4.02 Total: 10.25 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.93 Total: -59.32 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.22 Total: -2.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.37 -8.16 -41.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.736 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds