Wall clock time and date at job start Tue Mar 31 2020 20:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46709 * 2 1 4 4 C 1.50700 * 109.47368 * 239.99601 * 2 1 3 5 5 H 1.08001 * 119.99746 * 239.99883 * 4 2 1 6 6 C 1.37872 * 119.99955 * 59.99590 * 4 2 1 7 7 N 1.31523 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00253 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46645 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47173 * 120.00030 * 8 6 4 11 11 H 1.48499 * 109.47565 * 240.00376 * 8 6 4 12 12 N 1.46505 * 109.46875 * 119.99288 * 2 1 3 13 13 C 1.34770 * 119.99909 * 275.00194 * 12 2 1 14 14 O 1.21575 * 120.00462 * 0.02562 * 13 12 2 15 15 N 1.34785 * 119.99656 * 180.02562 * 13 12 2 16 16 C 1.39410 * 119.99833 * 185.08721 * 15 13 12 17 17 C 1.39334 * 119.60722 * 174.92416 * 16 15 13 18 18 C 1.38341 * 119.33491 * 180.26267 * 17 16 15 19 19 C 1.38810 * 118.58162 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 120.40904 * 179.97438 * 19 18 17 21 21 C 1.39388 * 119.17925 * 0.02562 * 19 18 17 22 22 C 1.43204 * 119.70767 * 180.02562 * 21 19 18 23 23 N 7.40222 * 91.21224 * 53.02757 * 2 1 3 24 24 N 1.32039 * 119.60983 * 355.20028 * 16 15 13 25 25 H 1.09010 * 109.46491 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47492 * 299.99931 * 1 2 3 27 27 H 1.08994 * 109.47211 * 60.00854 * 1 2 3 28 28 H 0.97002 * 119.99829 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99635 * 95.00786 * 12 2 1 30 30 H 0.96996 * 120.00082 * 5.08758 * 15 13 12 31 31 H 1.07992 * 120.33069 * 0.25437 * 17 16 15 32 32 H 1.08007 * 120.70957 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9435 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1476 -2.2864 -3.6035 10 1 1.1679 -1.5870 -4.8163 11 1 3.1473 -0.1860 -4.8160 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3571 14 8 1.8574 1.1615 2.4118 15 7 2.5967 -0.6532 3.4576 16 6 2.6296 0.0125 4.6821 17 6 2.9948 -0.6820 5.8335 18 6 3.0203 -0.0172 7.0464 19 6 2.6782 1.3278 7.0739 20 35 2.6948 2.2865 8.7038 21 6 2.3211 1.9626 5.8855 22 6 1.9666 3.3500 5.9007 23 7 1.6866 4.4509 5.9125 24 7 2.3090 1.2921 4.7378 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.2491 -1.6316 1.1528 30 1 2.8974 -1.5734 3.3976 31 1 3.2552 -1.7286 5.7796 32 1 3.2997 -0.5339 7.9528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434735824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:27 Heat of formation + Delta-G solvation = 37.378701 kcal Electronic energy + Delta-G solvation = -19983.387966 eV Core-core repulsion = 16604.599900 eV Total energy + Delta-G solvation = -3378.788066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.08756 -40.56826 -37.92777 -36.93940 -35.91146 -34.44127 -34.00037 -32.80352 -31.02669 -29.80671 -27.32909 -26.30164 -24.68273 -23.00778 -21.64972 -21.01297 -19.89217 -18.18385 -18.06310 -17.18223 -16.97802 -16.74129 -16.65475 -15.84654 -15.72911 -15.08756 -14.79337 -14.39702 -14.31385 -14.26986 -14.03151 -13.73548 -13.43383 -13.02788 -12.94756 -12.75481 -12.66253 -12.26461 -12.09627 -11.71160 -11.44519 -11.35685 -11.07509 -10.89291 -10.61626 -10.37801 -9.84121 -9.30608 -8.16269 -6.33770 -0.71900 -0.00293 0.34147 1.17743 1.46614 1.46843 1.56707 1.58100 1.62444 2.22383 2.29468 2.43276 2.75533 3.14855 3.27565 3.57127 3.62364 3.83289 4.15273 4.50714 4.73915 4.76564 4.93554 5.02881 5.10822 5.37224 5.51806 5.59656 5.65297 5.79190 6.00985 6.10090 6.11382 6.65426 6.75679 7.28963 7.36277 7.72862 8.90496 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.033412 B = 0.002472 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.819786 B =11323.867309 C =11909.493765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H -0.005 1.005 4 C -0.542 4.542 5 H 0.080 0.920 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.255 1.255 10 H -0.280 1.280 11 H -0.287 1.287 12 N -0.711 5.711 13 C 0.681 3.319 14 O -0.589 6.589 15 N -0.650 5.650 16 C 0.385 3.615 17 C -0.140 4.140 18 C -0.001 4.001 19 C -0.135 4.135 20 Br -0.017 7.017 21 C 0.229 3.771 22 C 0.270 3.730 23 N -0.408 5.408 24 N -0.491 5.491 25 H 0.044 0.956 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.264 0.736 29 H 0.407 0.593 30 H 0.440 0.560 31 H 0.211 0.789 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -10.503 25.484 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.013 0.987 4 C -0.580 4.580 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.178 1.178 10 H -0.206 1.206 11 H -0.214 1.214 12 N -0.365 5.365 13 C 0.380 3.620 14 O -0.464 6.464 15 N -0.301 5.301 16 C 0.149 3.851 17 C -0.164 4.164 18 C -0.028 4.028 19 C -0.222 4.222 20 Br 0.068 6.932 21 C 0.088 3.912 22 C -0.047 4.047 23 N -0.085 5.085 24 N -0.208 5.208 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.282 0.718 31 H 0.228 0.772 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.128 -6.890 25.068 26.710 hybrid contribution 0.394 -1.303 -1.100 1.750 sum 6.522 -8.192 23.967 26.155 Atomic orbital electron populations 1.21919 0.98556 0.99532 0.99286 1.18222 0.90756 0.91597 0.80845 0.98674 1.21576 1.32432 1.13603 0.90415 0.90223 1.25836 0.94930 0.95582 1.02485 1.70086 1.37178 1.24079 1.24513 0.85260 0.78019 0.78534 0.78274 1.17834 1.20616 1.21367 1.45417 1.68846 1.14052 1.08160 1.16429 0.79184 0.85167 0.81241 1.91016 1.55658 1.15829 1.83920 1.42644 1.65640 1.17376 1.04439 1.18614 0.92556 0.87254 0.86664 1.22229 1.01754 1.03980 0.88485 1.21863 0.91239 0.89299 1.00372 1.22826 1.09762 0.98207 0.91394 1.96807 1.97651 1.74570 1.24201 1.16003 0.99839 0.86530 0.88843 1.25316 0.93938 0.92443 0.92998 1.81150 1.07612 1.12111 1.07632 1.67449 1.17067 1.09760 1.26494 0.93709 0.97393 0.91685 0.92653 0.75776 0.71840 0.77245 0.77538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.73 2.56 44.24 0.11 14.84 16 3 H 0.00 -0.29 7.58 -2.38 -0.02 -0.31 16 4 C -0.54 -27.71 8.73 25.60 0.22 -27.49 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 9 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.71 -27.42 5.07 -461.41 -2.34 -29.76 16 13 C 0.68 26.08 8.49 179.05 1.52 27.60 16 14 O -0.59 -29.68 14.26 -3.95 -0.06 -29.73 16 15 N -0.65 -15.49 5.40 -322.17 -1.74 -17.23 16 16 C 0.38 8.91 7.42 133.08 0.99 9.90 16 17 C -0.14 -1.37 9.94 22.56 0.22 -1.14 16 18 C 0.00 -0.01 9.92 22.43 0.22 0.21 16 19 C -0.13 -2.44 6.27 22.68 0.14 -2.29 16 20 Br -0.02 -0.29 32.64 -20.37 -0.66 -0.95 16 21 C 0.23 6.41 6.58 40.50 0.27 6.67 16 22 C 0.27 8.91 14.39 88.33 1.27 10.18 16 23 N -0.41 -14.65 18.54 19.01 0.35 -14.30 16 24 N -0.49 -16.14 7.79 -186.32 -1.45 -17.59 16 25 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.41 12.10 8.56 -92.71 -0.79 11.30 16 30 H 0.44 5.48 8.72 -92.71 -0.81 4.67 16 31 H 0.21 -0.24 8.06 -2.91 -0.02 -0.26 16 32 H 0.21 0.00 8.06 -2.91 -0.02 -0.03 16 Total: -1.00 -80.73 314.12 2.06 -78.66 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -0.39 Total: 6.92 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 6.09 Total: 33.42 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -4.94 Total: -131.46 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.06 Total: -29.73 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.66 Total: -0.95 kcal Total: -80.73 2.06 -78.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.040 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds