Wall clock time and date at job start Tue Mar 31 2020 20:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47436 * 2 1 4 4 C 1.50702 * 109.46992 * 120.00114 * 2 1 3 5 5 H 1.07999 * 119.99872 * 120.00449 * 4 2 1 6 6 C 1.37874 * 120.00022 * 299.99630 * 4 2 1 7 7 N 1.31518 * 120.00344 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00035 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47313 * 89.99560 * 8 6 4 10 10 H 1.48504 * 109.47146 * 209.99982 * 8 6 4 11 11 H 1.48506 * 109.46690 * 329.99854 * 8 6 4 12 12 N 1.46504 * 109.47068 * 239.99769 * 2 1 3 13 13 C 1.34776 * 119.99788 * 85.00166 * 12 2 1 14 14 O 1.21582 * 119.99851 * 359.97438 * 13 12 2 15 15 N 1.34772 * 119.99715 * 180.02562 * 13 12 2 16 16 C 1.39416 * 119.99906 * 174.90149 * 15 13 12 17 17 C 1.39330 * 119.60821 * 185.10805 * 16 15 13 18 18 C 1.38347 * 119.33390 * 179.74915 * 17 16 15 19 19 C 1.38803 * 118.58063 * 0.51288 * 18 17 16 20 20 Br 1.89104 * 120.41209 * 179.73218 * 19 18 17 21 21 C 1.39385 * 119.17891 * 359.74812 * 19 18 17 22 22 C 1.43203 * 119.70760 * 179.97438 * 21 19 18 23 23 N 7.40391 * 91.50834 * 307.05463 * 2 1 3 24 24 N 1.32044 * 119.60599 * 5.37848 * 16 15 13 25 25 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47038 * 60.00080 * 1 2 3 27 27 H 1.09001 * 109.46983 * 299.99996 * 1 2 3 28 28 H 0.96993 * 120.00168 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00003 * 265.00125 * 12 2 1 30 30 H 0.96996 * 120.00720 * 354.89761 * 15 13 12 31 31 H 1.07996 * 120.33359 * 0.02562 * 17 16 15 32 32 H 1.08005 * 120.70850 * 180.26348 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1612 -2.4118 15 7 2.5958 -0.6538 -3.4576 16 6 2.6286 0.0117 -4.6823 17 6 2.9922 -0.6832 -5.8339 18 6 3.0177 -0.0185 -7.0469 19 6 2.6883 1.3297 -7.0724 20 35 2.7136 2.2907 -8.7009 21 6 2.3389 1.9665 -5.8828 22 6 1.9975 3.3571 -5.8960 23 7 1.7249 4.4599 -5.9067 24 7 2.3199 1.2944 -4.7361 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.9041 -0.5274 4.4375 29 1 2.2490 -1.6318 -1.1526 30 1 2.8961 -1.5742 -3.3978 31 1 3.2471 -1.7313 -5.7808 32 1 3.2921 -0.5365 -7.9540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434735837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:31 Heat of formation + Delta-G solvation = 69.470825 kcal Electronic energy + Delta-G solvation = -20064.302632 eV Core-core repulsion = 16686.906184 eV Total energy + Delta-G solvation = -3377.396447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17167 -39.39131 -36.79637 -35.60055 -34.60315 -33.35179 -32.50707 -31.94071 -30.16012 -28.93809 -25.47700 -25.21999 -23.74877 -21.64264 -20.32083 -19.90061 -18.60344 -17.12386 -16.65808 -16.36818 -16.03341 -15.69984 -15.19471 -14.59486 -14.31160 -14.03914 -13.44108 -13.30108 -13.22822 -12.96218 -12.93946 -12.75292 -12.22915 -12.10616 -11.80781 -11.34449 -10.87628 -10.83063 -10.45530 -10.32673 -10.23204 -10.20614 -9.67840 -9.29847 -9.25698 -8.81468 -8.59201 -8.19362 -6.25422 -4.28663 0.09789 0.69706 1.09322 2.20984 2.53399 2.65006 3.21994 3.23559 3.34759 3.39676 3.40241 3.76926 4.23517 4.28592 4.29143 4.33514 4.65781 4.82205 5.09847 5.21113 5.29099 5.61259 6.24562 6.28506 6.36032 6.50423 6.60425 6.86169 7.12422 7.20538 7.21256 7.44692 7.55475 8.18961 8.48392 8.71848 8.95488 9.35130 10.86540 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002675 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.407909 B =10465.207533 C =11204.859091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.254 3.746 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.709 5.709 13 C 0.681 3.319 14 O -0.534 6.534 15 N -0.668 5.668 16 C 0.416 3.584 17 C -0.184 4.184 18 C -0.013 4.013 19 C -0.151 4.151 20 Br -0.025 7.025 21 C 0.266 3.734 22 C 0.262 3.738 23 N -0.366 5.366 24 N -0.434 5.434 25 H 0.053 0.947 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.393 0.607 30 H 0.417 0.583 31 H 0.156 0.844 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -2.988 -26.539 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.151 3.849 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.362 5.362 13 C 0.380 3.620 14 O -0.405 6.405 15 N -0.316 5.316 16 C 0.179 3.821 17 C -0.210 4.210 18 C -0.040 4.040 19 C -0.238 4.238 20 Br 0.059 6.941 21 C 0.124 3.876 22 C -0.056 4.056 23 N -0.042 5.042 24 N -0.151 5.151 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.254 0.746 31 H 0.173 0.827 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.021 0.551 -25.982 26.067 hybrid contribution -0.012 -1.387 0.113 1.392 sum 2.010 -0.836 -25.870 25.961 Atomic orbital electron populations 1.22479 0.99279 1.00876 0.99473 1.19060 0.90012 0.94469 0.81408 0.93154 1.21000 1.33482 1.14558 0.88429 0.90131 1.24803 0.95441 0.96684 0.95469 1.69856 1.44780 1.40089 0.98091 0.86896 0.80529 0.83597 0.77629 1.20242 1.22082 1.18528 1.45510 1.68626 1.13582 1.08447 1.16254 0.79639 0.85746 0.80328 1.91042 1.53509 1.13076 1.82861 1.43102 1.66072 1.16670 1.05721 1.18159 0.90660 0.87637 0.85606 1.21716 1.06205 1.02225 0.90884 1.21248 0.93040 0.90947 0.98746 1.22613 1.11859 0.96883 0.92470 1.96785 1.97776 1.73930 1.25590 1.16027 0.96564 0.87255 0.87799 1.24687 0.95068 0.91720 0.94106 1.81183 1.05719 1.10929 1.06367 1.67769 1.15510 1.07186 1.24620 0.92799 0.94427 0.93344 0.92193 0.77392 0.74595 0.82682 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.25 5.85 2.15 -69.08 -0.15 5.70 16 3 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 4 C -0.54 -14.01 9.31 -34.44 -0.32 -14.34 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.88 21.56 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.71 -12.97 5.07 -59.81 -0.30 -13.28 16 13 C 0.68 12.13 8.49 -86.92 -0.74 11.39 16 14 O -0.53 -11.96 14.26 5.29 0.08 -11.88 16 15 N -0.67 -8.03 5.40 -15.80 -0.09 -8.12 16 16 C 0.42 4.93 7.42 -154.84 -1.15 3.78 16 17 C -0.18 -1.28 9.94 -39.13 -0.39 -1.67 16 18 C -0.01 -0.08 9.92 -39.33 -0.39 -0.47 16 19 C -0.15 -1.45 6.27 -38.95 -0.24 -1.70 16 20 Br -0.03 -0.22 32.64 -68.01 -2.22 -2.44 16 21 C 0.27 3.52 6.58 -85.04 -0.56 2.96 16 22 C 0.26 3.91 14.39 -22.47 -0.32 3.59 16 23 N -0.37 -5.91 18.54 41.84 0.78 -5.13 16 24 N -0.43 -6.69 7.79 -10.24 -0.08 -6.77 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.39 5.95 8.56 -40.82 -0.35 5.60 16 30 H 0.42 3.07 8.72 -40.82 -0.36 2.72 16 31 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.16 0.51 8.06 -52.48 -0.42 0.09 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -34.20 307.30 -7.11 -41.32 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.51 Total: 1.27 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -4.03 Total: 8.12 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 1.08 Total: -58.43 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.41 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.22 Total: -2.44 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.20 -7.11 -41.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.788 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds