Wall clock time and date at job start Tue Mar 31 2020 20:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47436 * 2 1 4 4 C 1.50702 * 109.46992 * 120.00114 * 2 1 3 5 5 H 1.07999 * 119.99872 * 120.00449 * 4 2 1 6 6 C 1.37874 * 120.00022 * 299.99630 * 4 2 1 7 7 N 1.31518 * 120.00344 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00035 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47313 * 89.99560 * 8 6 4 10 10 H 1.48504 * 109.47146 * 209.99982 * 8 6 4 11 11 H 1.48506 * 109.46690 * 329.99854 * 8 6 4 12 12 N 1.46504 * 109.47068 * 239.99769 * 2 1 3 13 13 C 1.34776 * 119.99788 * 85.00166 * 12 2 1 14 14 O 1.21582 * 119.99851 * 359.97438 * 13 12 2 15 15 N 1.34772 * 119.99715 * 180.02562 * 13 12 2 16 16 C 1.39416 * 119.99906 * 174.90149 * 15 13 12 17 17 C 1.39330 * 119.60821 * 185.10805 * 16 15 13 18 18 C 1.38347 * 119.33390 * 179.74915 * 17 16 15 19 19 C 1.38803 * 118.58063 * 0.51288 * 18 17 16 20 20 Br 1.89104 * 120.41209 * 179.73218 * 19 18 17 21 21 C 1.39385 * 119.17891 * 359.74812 * 19 18 17 22 22 C 1.43203 * 119.70760 * 179.97438 * 21 19 18 23 23 N 7.40391 * 91.50834 * 307.05463 * 2 1 3 24 24 N 1.32044 * 119.60599 * 5.37848 * 16 15 13 25 25 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47038 * 60.00080 * 1 2 3 27 27 H 1.09001 * 109.46983 * 299.99996 * 1 2 3 28 28 H 0.96993 * 120.00168 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00003 * 265.00125 * 12 2 1 30 30 H 0.96996 * 120.00720 * 354.89761 * 15 13 12 31 31 H 1.07996 * 120.33359 * 0.02562 * 17 16 15 32 32 H 1.08005 * 120.70850 * 180.26348 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1612 -2.4118 15 7 2.5958 -0.6538 -3.4576 16 6 2.6286 0.0117 -4.6823 17 6 2.9922 -0.6832 -5.8339 18 6 3.0177 -0.0185 -7.0469 19 6 2.6883 1.3297 -7.0724 20 35 2.7136 2.2907 -8.7009 21 6 2.3389 1.9665 -5.8828 22 6 1.9975 3.3571 -5.8960 23 7 1.7249 4.4599 -5.9067 24 7 2.3199 1.2944 -4.7361 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.9041 -0.5274 4.4375 29 1 2.2490 -1.6318 -1.1526 30 1 2.8961 -1.5742 -3.3978 31 1 3.2471 -1.7313 -5.7808 32 1 3.2921 -0.5365 -7.9540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434735837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:30 Heat of formation + Delta-G solvation = 43.907246 kcal Electronic energy + Delta-G solvation = -20065.411152 eV Core-core repulsion = 16686.906184 eV Total energy + Delta-G solvation = -3378.504967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11664 -40.63624 -37.95431 -37.06909 -35.94415 -34.48747 -34.05522 -32.90484 -31.61500 -29.99086 -27.21632 -26.32599 -24.74232 -23.03602 -21.68370 -21.03738 -19.99220 -18.35980 -18.18747 -17.38987 -17.04935 -16.81798 -16.64031 -15.91916 -15.81773 -15.09955 -14.86657 -14.81724 -14.32765 -14.28428 -14.11621 -14.03840 -13.68862 -13.43830 -13.27431 -12.79228 -12.75707 -12.14325 -11.79732 -11.58305 -11.46449 -11.35336 -11.26719 -10.90048 -10.86540 -10.42042 -9.95743 -9.34137 -8.38106 -6.42976 -0.72810 -0.01786 0.33698 1.16390 1.27051 1.36453 1.45157 1.54516 1.56254 2.17248 2.26100 2.28264 2.73332 2.99006 3.17520 3.56001 3.60223 3.80352 4.14243 4.43789 4.50879 4.56420 4.71596 4.74683 4.99274 5.01574 5.29191 5.42165 5.50942 5.62231 5.74618 6.07740 6.19316 6.57366 6.63374 7.15951 7.25958 7.63400 8.76845 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002675 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.407909 B =10465.207533 C =11204.859091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.261 3.739 3 H 0.019 0.981 4 C -0.529 4.529 5 H 0.065 0.935 6 C 0.034 3.966 7 N -0.931 5.931 8 Si 0.932 3.068 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.267 1.267 12 N -0.706 5.706 13 C 0.685 3.315 14 O -0.585 6.585 15 N -0.649 5.649 16 C 0.385 3.615 17 C -0.139 4.139 18 C -0.002 4.002 19 C -0.134 4.134 20 Br -0.018 7.018 21 C 0.230 3.770 22 C 0.271 3.729 23 N -0.408 5.408 24 N -0.488 5.488 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.270 0.730 29 H 0.409 0.591 30 H 0.440 0.560 31 H 0.210 0.790 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -5.273 -29.272 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.156 3.844 3 H 0.037 0.963 4 C -0.567 4.567 5 H 0.083 0.917 6 C -0.166 4.166 7 N -0.570 5.570 8 Si 0.760 3.240 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.192 1.192 12 N -0.360 5.360 13 C 0.384 3.616 14 O -0.460 6.460 15 N -0.301 5.301 16 C 0.150 3.850 17 C -0.164 4.164 18 C -0.028 4.028 19 C -0.222 4.222 20 Br 0.067 6.933 21 C 0.089 3.911 22 C -0.046 4.046 23 N -0.085 5.085 24 N -0.205 5.205 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.282 0.718 31 H 0.227 0.773 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.348 -1.779 -28.795 28.945 hybrid contribution -0.006 -0.767 0.787 1.099 sum 2.342 -2.546 -28.008 28.221 Atomic orbital electron populations 1.22361 0.98053 1.01801 0.99151 1.18618 0.90859 0.92796 0.82129 0.96306 1.21232 1.32246 1.13681 0.89544 0.91728 1.25444 0.96760 0.98940 0.95501 1.69950 1.46653 1.41804 0.98630 0.86115 0.80069 0.80775 0.77029 1.18522 1.22123 1.19246 1.45107 1.69031 1.14183 1.07725 1.16322 0.79087 0.85090 0.81082 1.91018 1.55594 1.15456 1.83937 1.42600 1.65602 1.17455 1.04396 1.18568 0.92652 0.87257 0.86547 1.22229 1.01621 1.04029 0.88540 1.21857 0.91221 0.89350 1.00384 1.22829 1.09761 0.98108 0.91456 1.96817 1.97619 1.74416 1.24421 1.15983 0.99898 0.86452 0.88811 1.25280 0.93944 0.92394 0.93014 1.81156 1.07582 1.12128 1.07610 1.67444 1.17051 1.09544 1.26448 0.91182 0.94005 0.94337 0.92045 0.75482 0.71775 0.77344 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.67 8.96 71.98 0.65 -6.02 16 2 C 0.26 12.05 2.15 44.25 0.10 12.15 16 3 H 0.02 1.00 6.64 -2.39 -0.02 0.99 16 4 C -0.53 -27.76 9.31 25.60 0.24 -27.53 16 5 H 0.06 3.53 7.98 -2.91 -0.02 3.51 16 6 C 0.03 1.86 5.45 84.65 0.46 2.32 16 7 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 8 Si 0.93 44.77 24.37 68.60 1.67 46.44 16 9 H -0.26 -11.70 6.87 99.48 0.68 -11.02 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.27 -13.05 6.53 99.48 0.65 -12.40 16 12 N -0.71 -25.31 5.07 -461.40 -2.34 -27.65 16 13 C 0.68 23.96 8.49 179.06 1.52 25.48 16 14 O -0.58 -26.74 14.26 -3.97 -0.06 -26.80 16 15 N -0.65 -14.08 5.40 -322.17 -1.74 -15.82 16 16 C 0.39 8.13 7.42 133.07 0.99 9.12 16 17 C -0.14 -1.18 9.94 22.56 0.22 -0.95 16 18 C 0.00 -0.01 9.92 22.43 0.22 0.21 16 19 C -0.13 -2.24 6.27 22.68 0.14 -2.09 16 20 Br -0.02 -0.27 32.64 -20.37 -0.66 -0.94 16 21 C 0.23 5.96 6.58 40.50 0.27 6.23 16 22 C 0.27 8.36 14.39 88.33 1.27 9.63 16 23 N -0.41 -13.81 18.54 19.00 0.35 -13.46 16 24 N -0.49 -14.82 7.79 -186.32 -1.45 -16.27 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.71 3.27 -2.39 -0.01 1.71 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.41 11.76 8.56 -92.71 -0.79 10.97 16 30 H 0.44 4.85 8.72 -92.71 -0.81 4.04 16 31 H 0.21 -0.43 8.06 -2.91 -0.02 -0.46 16 32 H 0.21 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -79.61 307.30 1.68 -77.93 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -0.46 Total: 2.49 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 6.07 Total: 28.54 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -4.88 Total: -127.66 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.66 Total: -0.94 kcal Total: -79.61 1.68 -77.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.836 kcal (2) G-P(sol) polarization free energy of solvation -79.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds