Wall clock time and date at job start Tue Mar 31 2020 20:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31563 * 122.23242 * 2 1 4 4 C 1.29981 * 117.13557 * 180.02562 * 3 2 1 5 5 N 1.38744 * 125.36314 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00344 * 180.02562 * 5 4 3 7 7 O 1.21534 * 119.99532 * 0.02562 * 6 5 4 8 8 C 1.48079 * 120.00594 * 180.02562 * 6 5 4 9 9 C 1.39933 * 121.12122 * 359.71864 * 8 6 5 10 10 N 1.31757 * 119.78026 * 179.75609 * 9 8 6 11 11 N 1.28276 * 122.41882 * 0.54306 * 10 9 8 12 12 C 1.32288 * 122.44975 * 359.71751 * 11 10 9 13 13 O 1.35698 * 120.07888 * 180.02562 * 12 11 10 14 14 C 1.39219 * 119.83803 * 0.02562 * 12 11 10 15 15 S 1.76143 * 109.27134 * 0.02562 * 4 3 2 16 16 C 1.34695 * 122.22619 * 180.02562 * 2 1 3 17 17 S 1.76196 * 125.93090 * 359.71492 * 16 2 1 18 18 C 1.76198 * 99.99936 * 180.02562 * 17 16 2 19 19 H 1.07998 * 120.00112 * 359.97438 * 18 17 16 20 20 C 1.38438 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31812 * 119.99756 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00228 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46867 * 89.99629 * 22 20 18 24 24 H 1.48497 * 109.47177 * 209.99973 * 22 20 18 25 25 H 1.48502 * 109.46643 * 329.99950 * 22 20 18 26 26 H 1.09008 * 109.47075 * 269.97587 * 1 2 3 27 27 H 1.08998 * 109.47117 * 29.96889 * 1 2 3 28 28 H 1.08998 * 109.47675 * 149.97634 * 1 2 3 29 29 H 0.97010 * 120.00165 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.11055 * 0.02562 * 9 8 6 31 31 H 0.96700 * 114.00374 * 269.97807 * 13 12 11 32 32 H 1.07996 * 121.11860 * 179.97438 * 14 12 11 33 33 H 0.97001 * 119.99311 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2086 1.1129 0.0000 4 6 3.5033 0.9974 -0.0005 5 7 4.4036 2.0530 -0.0001 6 6 5.7290 1.8084 -0.0012 7 8 6.1355 0.6631 -0.0031 8 6 6.6900 2.9351 -0.0002 9 6 6.2479 4.2627 -0.0040 10 7 7.1261 5.2449 0.0019 11 7 8.3917 5.0358 0.0008 12 6 8.9100 3.8187 -0.0008 13 8 10.2569 3.6530 -0.0014 14 6 8.0703 2.7082 -0.0019 15 16 3.9346 -0.7104 -0.0018 16 6 2.2252 -1.1394 -0.0005 17 16 1.5697 -2.7749 0.0059 18 6 3.0665 -3.7045 0.0024 19 1 4.0186 -3.1949 -0.0029 20 6 3.0220 -5.0882 0.0064 21 7 4.1418 -5.7835 0.0033 22 14 1.3751 -5.9697 0.0162 23 1 0.9325 -6.2071 -1.3813 24 1 1.5141 -7.2704 0.7191 25 1 0.3697 -5.1323 0.7185 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5133 28 1 -0.3634 -0.8897 -0.5142 29 1 4.0792 2.9673 0.0010 30 1 5.1903 4.4816 -0.0073 31 1 10.6470 3.6057 -0.8849 32 1 8.4712 1.7054 -0.0036 33 1 4.1105 -6.7530 0.0057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443052412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:42 Heat of formation + Delta-G solvation = 6.282845 kcal Electronic energy + Delta-G solvation = -22696.278521 eV Core-core repulsion = 18975.366301 eV Total energy + Delta-G solvation = -3720.912221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.029 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70368 -41.38262 -40.23325 -38.73068 -36.48744 -34.82776 -34.70934 -32.73077 -32.03435 -28.84391 -27.92457 -27.53825 -25.75555 -24.78832 -22.88722 -21.80044 -20.47327 -19.76179 -19.63737 -18.95234 -18.22207 -17.59975 -17.41280 -17.26772 -17.18885 -16.86314 -16.27931 -15.72986 -15.61038 -15.10634 -15.01464 -14.68343 -14.51049 -13.62386 -13.50315 -13.40456 -13.35432 -13.16890 -13.11043 -12.73170 -12.54103 -12.23916 -11.94629 -11.78989 -11.67082 -11.33031 -11.02934 -11.02044 -10.77229 -10.65865 -10.59544 -9.65504 -8.62486 -8.56678 -6.35576 -1.16144 -0.49020 -0.28792 0.08446 0.70095 1.02947 1.12018 1.20196 1.29313 1.39730 1.60035 1.87478 2.10380 2.13606 2.29164 2.49551 2.77019 2.82713 2.93726 3.17667 3.51851 3.62939 3.85097 4.22289 4.35019 4.51734 4.53879 4.71343 4.86724 4.90829 4.96684 5.41242 5.59828 5.67846 6.07097 6.39276 6.43930 6.73525 6.76194 7.30331 8.49947 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002868 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.624571 B = 9761.513687 C =11218.421498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.053 3.947 3 N -0.474 5.474 4 C 0.225 3.775 5 N -0.589 5.589 6 C 0.562 3.438 7 O -0.518 6.518 8 C -0.107 4.107 9 C 0.078 3.922 10 N -0.228 5.228 11 N -0.262 5.262 12 C 0.269 3.731 13 O -0.474 6.474 14 C -0.064 4.064 15 S 0.173 5.827 16 C -0.272 4.272 17 S 0.067 5.933 18 C -0.568 4.568 19 H 0.070 0.930 20 C 0.050 3.950 21 N -0.906 5.906 22 Si 0.912 3.088 23 H -0.253 1.253 24 H -0.256 1.256 25 H -0.218 1.218 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.439 0.561 30 H 0.218 0.782 31 H 0.433 0.567 32 H 0.178 0.822 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 18.738 -1.740 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.196 5.196 4 C -0.147 4.147 5 N -0.241 5.241 6 C 0.348 3.652 7 O -0.393 6.393 8 C -0.121 4.121 9 C -0.088 4.088 10 N -0.070 5.070 11 N -0.114 5.114 12 C 0.082 3.918 13 O -0.284 6.284 14 C -0.095 4.095 15 S 0.419 5.581 16 C -0.506 4.506 17 S 0.312 5.688 18 C -0.716 4.716 19 H 0.088 0.912 20 C -0.157 4.157 21 N -0.541 5.541 22 Si 0.731 3.269 23 H -0.177 1.177 24 H -0.180 1.180 25 H -0.141 1.141 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.282 0.718 30 H 0.235 0.765 31 H 0.296 0.704 32 H 0.195 0.805 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.124 18.781 -1.150 18.935 hybrid contribution 0.380 -1.573 -0.473 1.686 sum 2.504 17.208 -1.623 17.465 Atomic orbital electron populations 1.20338 0.85030 1.03655 1.03561 1.19818 0.98662 0.83782 1.06617 1.66052 1.02355 1.31313 1.19908 1.24014 0.90308 0.92760 1.07571 1.42098 1.03397 1.08583 1.70003 1.18342 0.81384 0.88899 0.76604 1.90867 1.77411 1.22992 1.48001 1.20600 0.93603 0.93797 1.04085 1.25074 1.04021 0.87385 0.92325 1.73085 0.95269 1.29240 1.09410 1.72758 1.07256 1.22122 1.09276 1.20701 0.86890 0.88713 0.95470 1.84791 1.13186 1.93671 1.36705 1.22981 0.91923 1.02846 0.91780 1.86508 1.02095 0.97324 1.72215 1.28154 1.01454 1.04623 1.16418 1.81975 1.10738 0.89338 1.86737 1.22855 0.93319 0.95420 1.60002 0.91202 1.25704 1.01229 0.96910 0.91899 1.70112 1.29039 1.08288 1.46672 0.85925 0.79388 0.80548 0.81041 1.17676 1.17950 1.14144 0.89831 0.89158 0.90794 0.71768 0.76529 0.70391 0.80474 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.02 71.23 0.71 -1.14 16 2 C 0.05 1.91 6.73 41.78 0.28 2.19 16 3 N -0.47 -15.84 10.55 -184.96 -1.95 -17.80 16 4 C 0.23 7.40 8.39 179.19 1.50 8.90 16 5 N -0.59 -13.27 5.35 -312.04 -1.67 -14.95 16 6 C 0.56 13.29 7.76 86.86 0.67 13.97 16 7 O -0.52 -17.00 14.00 -3.82 -0.05 -17.06 16 8 C -0.11 -1.80 5.92 -19.85 -0.12 -1.91 16 9 C 0.08 1.02 10.84 85.12 0.92 1.94 16 10 N -0.23 -4.11 11.48 -56.49 -0.65 -4.76 16 11 N -0.26 -5.17 11.50 -170.30 -1.96 -7.13 16 12 C 0.27 4.41 7.85 84.86 0.67 5.07 16 13 O -0.47 -5.99 13.57 -90.18 -1.22 -7.21 16 14 C -0.06 -1.05 9.72 22.91 0.22 -0.83 16 15 S 0.17 7.31 18.34 -56.49 -1.04 6.27 16 16 C -0.27 -11.57 6.67 67.01 0.45 -11.13 16 17 S 0.07 3.05 18.71 -56.49 -1.06 1.99 16 18 C -0.57 -31.76 9.80 67.87 0.67 -31.09 16 19 H 0.07 4.29 6.21 -2.91 -0.02 4.27 16 20 C 0.05 2.75 5.49 84.74 0.47 3.21 16 21 N -0.91 -53.15 13.98 21.59 0.30 -52.84 16 22 Si 0.91 39.56 27.73 68.60 1.90 41.47 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.22 -8.77 6.73 99.48 0.67 -8.10 16 26 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 2.06 7.38 -2.39 -0.02 2.04 16 29 H 0.44 5.86 6.97 -92.70 -0.65 5.21 16 30 H 0.22 1.02 6.53 -2.91 -0.02 1.00 16 31 H 0.43 0.76 9.06 -74.06 -0.67 0.09 16 32 H 0.18 2.79 7.79 -2.91 -0.02 2.76 16 33 H 0.28 15.12 8.32 -92.71 -0.77 14.35 16 Total: -1.00 -75.70 323.91 -1.07 -76.77 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -0.12 Total: 6.06 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 6.44 Total: -10.82 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.93 Total: -97.47 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.28 Total: -24.27 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.47 kcal Atomic # 16 Polarization: 10.36 SS G_CDS: -2.09 Total: 8.26 kcal Total: -75.70 -1.07 -76.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443052412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.057 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds