Wall clock time and date at job start Tue Mar 31 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.71061 * 125.44606 * 2 1 4 4 C 1.76084 * 90.36584 * 180.21662 * 3 2 1 5 5 C 1.47087 * 125.50515 * 179.84725 * 4 3 2 6 6 O 1.21663 * 120.00090 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00164 * 180.02562 * 5 4 3 8 8 C 1.39975 * 120.00354 * 175.61666 * 7 5 4 9 9 C 1.38743 * 120.07684 * 34.61669 * 8 7 5 10 10 C 1.38173 * 120.01841 * 179.70293 * 9 8 7 11 11 C 1.38558 * 120.18117 * 0.59056 * 10 9 8 12 12 F 1.35102 * 119.92582 * 179.70319 * 11 10 9 13 13 C 1.38350 * 120.15827 * 359.68474 * 11 10 9 14 14 C 1.38732 * 119.97923 * 0.02562 * 13 11 10 15 15 O 1.35774 * 120.09431 * 179.97438 * 14 13 11 16 16 C 1.34812 * 116.99583 * 5.42260 * 15 14 13 17 17 H 1.08003 * 119.99422 * 354.95317 * 16 15 14 18 18 C 1.38632 * 119.99727 * 174.95728 * 16 15 14 19 19 N 1.31567 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99638 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47589 * 89.99922 * 20 18 16 22 22 H 1.48499 * 109.47092 * 209.99989 * 20 18 16 23 23 H 1.48501 * 109.47359 * 329.99654 * 20 18 16 24 24 N 1.30746 * 108.99389 * 359.82498 * 4 3 2 25 25 C 1.30877 * 115.87128 * 359.97438 * 24 4 3 26 26 O 1.36055 * 122.17283 * 179.97438 * 25 24 4 27 27 H 1.09002 * 109.46870 * 270.09435 * 1 2 3 28 28 H 1.09001 * 109.47256 * 30.09565 * 1 2 3 29 29 H 1.09003 * 109.47451 * 150.09982 * 1 2 3 30 30 H 0.97000 * 120.00149 * 355.61399 * 7 5 4 31 31 H 1.08002 * 119.99200 * 359.97089 * 9 8 7 32 32 H 1.08000 * 119.91171 * 180.27316 * 10 9 8 33 33 H 1.07997 * 120.01318 * 180.02562 * 13 11 10 34 34 H 0.97000 * 119.99677 * 180.02562 * 19 18 16 35 35 H 0.96696 * 113.99960 * 90.02520 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4990 1.3936 0.0000 4 6 3.9400 0.3816 -0.0067 5 6 5.3272 0.8705 -0.0131 6 8 5.5507 2.0664 -0.0145 7 7 6.3507 -0.0062 -0.0183 8 6 7.6681 0.4563 -0.1170 9 6 8.0301 1.6563 0.4781 10 6 9.3324 2.1087 0.3851 11 6 10.2773 1.3732 -0.3120 12 9 11.5477 1.8234 -0.4048 13 6 9.9230 0.1785 -0.9131 14 6 8.6188 -0.2850 -0.8189 15 8 8.2685 -1.4569 -1.4083 16 6 9.2579 -2.1773 -1.9736 17 1 10.2603 -1.7775 -2.0163 18 6 8.9885 -3.4312 -2.5001 19 7 7.7674 -3.9182 -2.4476 20 14 10.3596 -4.4297 -3.2827 21 1 11.0074 -5.2765 -2.2492 22 1 9.7949 -5.2952 -4.3491 23 1 11.3665 -3.5111 -3.8723 24 7 3.5777 -0.8747 -0.0045 25 6 2.2880 -1.0971 0.0023 26 8 1.7698 -2.3551 0.0048 27 1 -0.3633 0.0017 1.0277 28 1 -0.3634 0.8891 -0.5153 29 1 -0.3634 -0.8909 -0.5123 30 1 6.1745 -0.9579 0.0464 31 1 7.2949 2.2347 1.0178 32 1 9.6133 3.0408 0.8527 33 1 10.6615 -0.3931 -1.4556 34 1 7.5791 -4.7957 -2.8157 35 1 1.6244 -2.7189 0.8888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001446047088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:37 Heat of formation + Delta-G solvation = -65.594338 kcal Electronic energy + Delta-G solvation = -25755.071330 eV Core-core repulsion = 21568.369449 eV Total energy + Delta-G solvation = -4186.701882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.29491 -40.64709 -39.94489 -38.59767 -36.59017 -36.29886 -34.20175 -32.70141 -32.42989 -29.60247 -28.92977 -27.08519 -25.53228 -25.05924 -22.83539 -22.04369 -21.30315 -19.72895 -18.68419 -18.35243 -17.96832 -17.67524 -17.05943 -16.52555 -15.91764 -15.34577 -15.26496 -15.03629 -14.85124 -14.32120 -14.24923 -13.88203 -13.67009 -13.64953 -13.49147 -13.31801 -13.11322 -12.83006 -12.37024 -12.27400 -12.18540 -11.68779 -11.39964 -11.16638 -11.00295 -10.79575 -10.55320 -10.31151 -9.86819 -9.80809 -9.64183 -9.53312 -8.97509 -8.79041 -7.94429 -7.19747 -6.59650 -4.18929 0.01859 0.90202 1.42632 1.71087 2.07727 2.16740 3.06983 3.07867 3.12881 3.15102 3.24612 3.69495 3.84884 4.28677 4.44781 4.64474 4.79682 4.82901 4.95235 5.07327 5.15232 5.31389 5.48877 5.54933 5.69592 5.71725 5.97737 6.12365 6.47186 6.69448 6.86551 6.87912 6.92074 7.12880 7.18951 7.41036 7.57374 7.75265 7.82328 8.28424 8.84111 9.43773 10.56121 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.003886 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.341198 B = 7203.006114 C = 9799.842273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.275 4.275 3 S 0.269 5.731 4 C 0.004 3.996 5 C 0.592 3.408 6 O -0.524 6.524 7 N -0.615 5.615 8 C 0.048 3.952 9 C -0.044 4.044 10 C -0.232 4.232 11 C 0.136 3.864 12 F -0.150 7.150 13 C -0.260 4.260 14 C 0.163 3.837 15 O -0.162 6.162 16 C -0.396 4.396 17 H 0.096 0.904 18 C 0.044 3.956 19 N -0.851 5.851 20 Si 0.943 3.057 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.266 1.266 24 N -0.427 5.427 25 C 0.241 3.759 26 O -0.458 6.458 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.426 0.574 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.273 0.727 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 6.767 7.102 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.400 4.400 3 S 0.524 5.476 4 C -0.272 4.272 5 C 0.375 3.625 6 O -0.401 6.401 7 N -0.259 5.259 8 C -0.046 4.046 9 C -0.064 4.064 10 C -0.253 4.253 11 C 0.117 3.883 12 F -0.129 7.129 13 C -0.281 4.281 14 C 0.106 3.894 15 O -0.064 6.064 16 C -0.472 4.472 17 H 0.113 0.887 18 C -0.162 4.162 19 N -0.484 5.484 20 Si 0.767 3.233 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.152 5.152 25 C 0.062 3.938 26 O -0.263 6.263 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.264 0.736 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.882 7.944 6.348 15.639 hybrid contribution 0.509 -2.166 -0.066 2.226 sum -11.372 5.777 6.282 14.219 Atomic orbital electron populations 1.20186 0.85719 1.04004 1.03088 1.25791 1.03795 0.97792 1.12589 1.83890 0.94871 1.06058 1.62774 1.27112 0.99143 0.90901 1.10024 1.16618 0.82000 0.85870 0.77984 1.90825 1.83793 1.14562 1.50924 1.42790 1.03267 1.11390 1.68482 1.16842 0.82837 0.98430 1.06532 1.20646 0.95296 0.93939 0.96565 1.20457 0.93046 1.02872 1.08903 1.17484 0.78470 0.93635 0.98738 1.91419 1.37658 1.89082 1.94721 1.20849 0.97789 0.98770 1.10646 1.18797 0.91196 0.88583 0.90808 1.83959 1.35929 1.25872 1.60622 1.21380 0.89823 0.98524 1.37424 0.88662 1.25326 0.97963 0.95971 0.96941 1.70037 1.18934 1.17957 1.41455 0.85673 0.79391 0.79407 0.78813 1.19671 1.20126 1.19000 1.66446 1.17093 1.18993 1.12699 1.17714 0.85260 0.86275 1.04555 1.84978 1.81830 1.26022 1.33467 0.90304 0.90759 0.89639 0.73600 0.83975 0.85750 0.83803 0.91669 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.21 36.00 0.37 -0.15 16 2 C -0.28 -3.06 6.38 -35.57 -0.23 -3.28 16 3 S 0.27 3.14 22.99 -107.50 -2.47 0.67 16 4 C 0.00 0.06 7.45 -14.43 -0.11 -0.05 16 5 C 0.59 10.75 7.65 -12.67 -0.10 10.65 16 6 O -0.52 -9.92 14.35 5.22 0.07 -9.84 16 7 N -0.62 -12.12 5.18 -10.78 -0.06 -12.18 16 8 C 0.05 1.00 6.33 -83.48 -0.53 0.48 16 9 C -0.04 -0.83 8.69 -39.42 -0.34 -1.17 16 10 C -0.23 -4.20 10.02 -39.49 -0.40 -4.60 16 11 C 0.14 2.68 7.29 -39.42 -0.29 2.39 16 12 F -0.15 -2.81 17.26 2.25 0.04 -2.78 16 13 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 14 C 0.16 3.79 6.67 -38.93 -0.26 3.53 16 15 O -0.16 -4.31 9.32 0.02 0.00 -4.31 16 16 C -0.40 -10.53 9.49 30.88 0.29 -10.24 16 17 H 0.10 2.36 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 19 N -0.85 -23.84 13.67 55.48 0.76 -23.08 16 20 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 N -0.43 -7.08 10.26 -11.61 -0.12 -7.19 16 25 C 0.24 3.34 7.74 -19.22 -0.15 3.19 16 26 O -0.46 -5.66 13.26 -19.91 -0.26 -5.92 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.62 7.98 -51.93 -0.41 0.21 16 30 H 0.43 8.60 8.23 -40.82 -0.34 8.26 16 31 H 0.14 2.51 6.19 -52.49 -0.32 2.18 16 32 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.14 3.11 5.64 -52.49 -0.30 2.81 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.39 2.81 9.06 45.56 0.41 3.22 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -31.57 334.66 -5.84 -37.41 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -1.63 Total: 11.51 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.19 Total: -4.17 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.58 Total: -42.45 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.19 Total: -20.08 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.47 Total: 0.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.57 -5.84 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446047088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.183 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds