Wall clock time and date at job start Tue Mar 31 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.71061 * 125.44606 * 2 1 4 4 C 1.76084 * 90.36584 * 180.21662 * 3 2 1 5 5 C 1.47087 * 125.50515 * 179.84725 * 4 3 2 6 6 O 1.21663 * 120.00090 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00164 * 180.02562 * 5 4 3 8 8 C 1.39975 * 120.00354 * 175.61666 * 7 5 4 9 9 C 1.38743 * 120.07684 * 34.61669 * 8 7 5 10 10 C 1.38173 * 120.01841 * 179.70293 * 9 8 7 11 11 C 1.38558 * 120.18117 * 0.59056 * 10 9 8 12 12 F 1.35102 * 119.92582 * 179.70319 * 11 10 9 13 13 C 1.38350 * 120.15827 * 359.68474 * 11 10 9 14 14 C 1.38732 * 119.97923 * 0.02562 * 13 11 10 15 15 O 1.35774 * 120.09431 * 179.97438 * 14 13 11 16 16 C 1.34812 * 116.99583 * 5.42260 * 15 14 13 17 17 H 1.08003 * 119.99422 * 354.95317 * 16 15 14 18 18 C 1.38632 * 119.99727 * 174.95728 * 16 15 14 19 19 N 1.31567 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99638 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47589 * 89.99922 * 20 18 16 22 22 H 1.48499 * 109.47092 * 209.99989 * 20 18 16 23 23 H 1.48501 * 109.47359 * 329.99654 * 20 18 16 24 24 N 1.30746 * 108.99389 * 359.82498 * 4 3 2 25 25 C 1.30877 * 115.87128 * 359.97438 * 24 4 3 26 26 O 1.36055 * 122.17283 * 179.97438 * 25 24 4 27 27 H 1.09002 * 109.46870 * 270.09435 * 1 2 3 28 28 H 1.09001 * 109.47256 * 30.09565 * 1 2 3 29 29 H 1.09003 * 109.47451 * 150.09982 * 1 2 3 30 30 H 0.97000 * 120.00149 * 355.61399 * 7 5 4 31 31 H 1.08002 * 119.99200 * 359.97089 * 9 8 7 32 32 H 1.08000 * 119.91171 * 180.27316 * 10 9 8 33 33 H 1.07997 * 120.01318 * 180.02562 * 13 11 10 34 34 H 0.97000 * 119.99677 * 180.02562 * 19 18 16 35 35 H 0.96696 * 113.99960 * 90.02520 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4990 1.3936 0.0000 4 6 3.9400 0.3816 -0.0067 5 6 5.3272 0.8705 -0.0131 6 8 5.5507 2.0664 -0.0145 7 7 6.3507 -0.0062 -0.0183 8 6 7.6681 0.4563 -0.1170 9 6 8.0301 1.6563 0.4781 10 6 9.3324 2.1087 0.3851 11 6 10.2773 1.3732 -0.3120 12 9 11.5477 1.8234 -0.4048 13 6 9.9230 0.1785 -0.9131 14 6 8.6188 -0.2850 -0.8189 15 8 8.2685 -1.4569 -1.4083 16 6 9.2579 -2.1773 -1.9736 17 1 10.2603 -1.7775 -2.0163 18 6 8.9885 -3.4312 -2.5001 19 7 7.7674 -3.9182 -2.4476 20 14 10.3596 -4.4297 -3.2827 21 1 11.0074 -5.2765 -2.2492 22 1 9.7949 -5.2952 -4.3491 23 1 11.3665 -3.5111 -3.8723 24 7 3.5777 -0.8747 -0.0045 25 6 2.2880 -1.0971 0.0023 26 8 1.7698 -2.3551 0.0048 27 1 -0.3633 0.0017 1.0277 28 1 -0.3634 0.8891 -0.5153 29 1 -0.3634 -0.8909 -0.5123 30 1 6.1745 -0.9579 0.0464 31 1 7.2949 2.2347 1.0178 32 1 9.6133 3.0408 0.8527 33 1 10.6615 -0.3931 -1.4556 34 1 7.5791 -4.7957 -2.8157 35 1 1.6244 -2.7189 0.8888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446047088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:37 Heat of formation + Delta-G solvation = -90.760730 kcal Electronic energy + Delta-G solvation = -25756.162627 eV Core-core repulsion = 21568.369449 eV Total energy + Delta-G solvation = -4187.793178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.85229 -41.92991 -41.26961 -40.20093 -38.09419 -37.49351 -35.71326 -34.34996 -33.54545 -31.22263 -30.43696 -28.33008 -27.39393 -26.01394 -24.32482 -23.56135 -22.69287 -21.06118 -20.20400 -19.80396 -19.46035 -18.71006 -18.48336 -17.95622 -17.18522 -17.01924 -16.72860 -16.59866 -16.26702 -15.98466 -15.65412 -15.46648 -15.27131 -14.99398 -14.64063 -14.33631 -14.08977 -14.01777 -13.87627 -13.63384 -13.46623 -13.06499 -12.99425 -12.61949 -12.38525 -12.16521 -12.09339 -11.76676 -11.59592 -11.22045 -10.90639 -10.85461 -10.58341 -9.79933 -9.59998 -8.86116 -8.52351 -6.20879 -1.05200 -0.12258 0.14248 0.42674 0.43499 1.00590 1.34980 1.42983 1.51444 1.83988 1.97173 2.12709 2.53898 2.62450 3.02396 3.13459 3.40526 3.41606 3.78727 3.80850 3.91760 4.15099 4.30698 4.49199 4.57261 4.67037 4.77302 4.88090 4.97106 5.12488 5.18864 5.25390 5.30857 5.39655 5.89360 5.95282 6.12221 6.30372 6.60741 6.80907 6.90734 7.59077 8.67661 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.003886 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.341198 B = 7203.006114 C = 9799.842273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.248 4.248 3 S 0.346 5.654 4 C -0.052 4.052 5 C 0.597 3.403 6 O -0.536 6.536 7 N -0.628 5.628 8 C 0.047 3.953 9 C -0.043 4.043 10 C -0.202 4.202 11 C 0.132 3.868 12 F -0.142 7.142 13 C -0.265 4.265 14 C 0.135 3.865 15 O -0.204 6.204 16 C -0.418 4.418 17 H 0.104 0.896 18 C -0.011 4.011 19 N -0.906 5.906 20 Si 1.015 2.985 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.255 1.255 24 N -0.458 5.458 25 C 0.211 3.789 26 O -0.469 6.469 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.419 0.581 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.138 0.862 34 H 0.274 0.726 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 8.868 7.939 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.373 4.373 3 S 0.600 5.400 4 C -0.325 4.325 5 C 0.382 3.618 6 O -0.414 6.414 7 N -0.271 5.271 8 C -0.047 4.047 9 C -0.063 4.063 10 C -0.222 4.222 11 C 0.112 3.888 12 F -0.120 7.120 13 C -0.285 4.285 14 C 0.081 3.919 15 O -0.109 6.109 16 C -0.494 4.494 17 H 0.121 0.879 18 C -0.211 4.211 19 N -0.542 5.542 20 Si 0.834 3.166 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.178 1.178 24 N -0.184 5.184 25 C 0.032 3.968 26 O -0.277 6.277 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.256 0.744 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.155 0.845 34 H 0.083 0.917 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.951 10.104 7.223 17.944 hybrid contribution 0.646 -2.524 -0.150 2.610 sum -12.305 7.579 7.073 16.090 Atomic orbital electron populations 1.20459 0.82539 1.05160 1.05166 1.26402 1.05728 0.96869 1.08305 1.83550 0.91717 1.04429 1.60313 1.26635 0.99362 0.92097 1.14357 1.16891 0.82724 0.85489 0.76658 1.90778 1.84392 1.14729 1.51522 1.42889 1.03417 1.11376 1.69392 1.17194 0.83303 0.98644 1.05590 1.20912 0.96115 0.93115 0.96189 1.20905 0.91885 1.03218 1.06145 1.17476 0.79201 0.93185 0.98954 1.91441 1.37112 1.88810 1.94672 1.20923 0.97210 0.99657 1.10754 1.19216 0.92574 0.88366 0.91752 1.83949 1.36505 1.27486 1.62972 1.21814 0.90383 0.99229 1.37965 0.87917 1.26494 1.00503 0.96799 0.97295 1.70176 1.21348 1.18665 1.44003 0.84634 0.76258 0.77728 0.77960 1.18667 1.19661 1.17828 1.66358 1.19106 1.20091 1.12885 1.17898 0.84889 0.87435 1.06568 1.84940 1.81494 1.25835 1.35466 0.87510 0.88702 0.89325 0.74400 0.82232 0.81755 0.84456 0.91659 0.72893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.21 71.23 0.73 -0.07 16 2 C -0.25 -4.92 6.38 24.87 0.16 -4.77 16 3 S 0.35 7.32 22.99 -56.49 -1.30 6.02 16 4 C -0.05 -1.67 7.45 87.18 0.65 -1.02 16 5 C 0.60 22.08 7.65 86.57 0.66 22.74 16 6 O -0.54 -20.00 14.35 -4.23 -0.06 -20.07 16 7 N -0.63 -25.86 5.18 -306.27 -1.59 -27.45 16 8 C 0.05 2.03 6.33 38.27 0.24 2.27 16 9 C -0.04 -1.57 8.69 22.38 0.19 -1.37 16 10 C -0.20 -6.73 10.02 22.33 0.22 -6.51 16 11 C 0.13 4.98 7.29 22.37 0.16 5.15 16 12 F -0.14 -5.02 17.26 44.97 0.78 -4.25 16 13 C -0.26 -11.66 9.14 22.41 0.20 -11.46 16 14 C 0.13 6.53 6.67 22.69 0.15 6.68 16 15 O -0.20 -11.60 9.32 -22.83 -0.21 -11.81 16 16 C -0.42 -23.43 9.49 67.91 0.64 -22.79 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.01 -0.62 5.49 84.83 0.47 -0.15 16 19 N -0.91 -53.67 13.67 21.61 0.30 -53.37 16 20 Si 1.01 41.93 29.55 68.60 2.03 43.95 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 N -0.46 -15.58 10.26 -303.99 -3.12 -18.70 16 25 C 0.21 5.74 7.74 84.02 0.65 6.39 16 26 O -0.47 -11.44 13.26 -94.17 -1.25 -12.69 16 27 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.00 7.98 -2.39 -0.02 0.98 16 30 H 0.42 18.31 8.23 -92.71 -0.76 17.55 16 31 H 0.16 5.29 6.19 -2.91 -0.02 5.27 16 32 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.14 6.13 5.64 -2.91 -0.02 6.11 16 34 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.41 5.68 9.06 -74.06 -0.67 5.01 16 Total: -1.00 -72.68 334.66 0.50 -72.19 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.21 Total: 31.08 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.14 Total: -4.91 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.41 Total: -99.52 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.52 Total: -44.56 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -1.30 Total: 6.02 kcal Total: -72.68 0.50 -72.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446047088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.574 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds