Wall clock time and date at job start Tue Mar 31 2020 21:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99645 * 2 1 4 4 H 1.48504 * 109.46919 * 269.99718 * 3 2 1 5 5 H 1.48497 * 109.47672 * 29.99952 * 3 2 1 6 6 H 1.48502 * 109.47174 * 150.00168 * 3 2 1 7 7 C 1.37874 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00255 * 183.20989 * 7 2 1 9 9 C 1.50706 * 119.99699 * 3.20707 * 7 2 1 10 10 C 1.52999 * 115.55263 * 324.18751 * 9 7 2 11 11 N 1.46498 * 109.46934 * 306.53952 * 10 9 7 12 12 C 1.34778 * 119.99593 * 175.01521 * 11 10 9 13 13 O 1.21601 * 120.00378 * 5.22116 * 12 11 10 14 14 C 1.47437 * 119.99853 * 185.22243 * 12 11 10 15 15 C 1.39768 * 120.20173 * 6.42101 * 14 12 11 16 16 C 1.37740 * 119.93871 * 180.27970 * 15 14 12 17 17 C 1.38608 * 120.35905 * 359.70510 * 16 15 14 18 18 C 1.38022 * 120.41622 * 359.97438 * 17 16 15 19 19 Br 1.89104 * 119.97540 * 179.97438 * 18 17 16 20 20 C 1.39031 * 120.04690 * 0.02562 * 18 17 16 21 21 N 1.38921 * 120.17881 * 179.97438 * 20 18 17 22 22 C 1.53004 * 117.49529 * 109.85795 * 9 7 2 23 23 C 1.53001 * 117.49533 * 178.51463 * 9 7 2 24 24 H 0.97005 * 120.00170 * 5.00418 * 1 2 3 25 25 H 1.09003 * 109.47149 * 186.53640 * 10 9 7 26 26 H 1.09000 * 109.47060 * 66.53512 * 10 9 7 27 27 H 0.96996 * 119.99997 * 355.01503 * 11 10 9 28 28 H 1.07995 * 120.02643 * 0.02562 * 15 14 12 29 29 H 1.07995 * 119.81930 * 179.73292 * 16 15 14 30 30 H 1.08002 * 119.78968 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99795 * 352.96181 * 21 20 18 32 32 H 0.97001 * 119.99795 * 172.67830 * 21 20 18 33 33 H 1.09000 * 117.49699 * 215.00343 * 22 9 7 34 34 H 1.09003 * 117.49926 * 0.02562 * 22 9 7 35 35 H 1.08993 * 117.50299 * 359.97438 * 23 9 7 36 36 H 1.09000 * 117.49599 * 144.97807 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0833 -1.1947 0.0529 9 6 1.2528 -2.4982 -0.0719 10 6 -0.0842 -2.5314 0.6712 11 7 0.1186 -2.1114 2.0600 12 6 -0.9400 -1.9666 2.8815 13 8 -2.0526 -2.2750 2.4998 14 6 -0.7491 -1.4341 4.2431 15 6 0.5015 -0.9534 4.6411 16 6 0.6753 -0.4625 5.9162 17 6 -0.3859 -0.4364 6.8075 18 6 -1.6288 -0.9011 6.4279 19 35 -3.0678 -0.8603 7.6542 20 6 -1.8234 -1.4003 5.1450 21 7 -3.0731 -1.8693 4.7602 22 6 1.3612 -3.3050 -1.3674 23 6 2.0762 -3.7873 -0.1027 24 1 -0.4850 0.8369 -0.0733 25 1 -0.4850 -3.5449 0.6529 26 1 -0.7866 -1.8540 0.1857 27 1 1.0146 -1.9377 2.3883 28 1 1.3319 -0.9708 3.9507 29 1 1.6436 -0.0956 6.2231 30 1 -0.2395 -0.0491 7.8050 31 1 -3.7854 -1.9447 5.4144 32 1 -3.2347 -2.1176 3.8365 33 1 0.4801 -3.8594 -1.6902 34 1 1.9766 -2.8927 -2.1671 35 1 3.1615 -3.6922 -0.0711 36 1 1.6656 -4.6590 0.4068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448737512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:12 Heat of formation + Delta-G solvation = 4.905257 kcal Electronic energy + Delta-G solvation = -21247.734111 eV Core-core repulsion = 17971.078234 eV Total energy + Delta-G solvation = -3276.655877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29981 -39.44653 -38.32447 -35.91912 -34.58295 -34.09599 -33.17131 -30.90354 -29.34912 -27.85873 -27.17833 -24.52022 -22.97211 -22.88049 -21.35466 -21.05936 -18.99360 -18.20605 -17.79328 -17.54300 -16.75683 -16.64690 -16.00930 -15.83309 -15.30070 -15.00565 -14.95849 -14.69397 -14.38335 -13.98456 -13.55168 -13.33481 -13.08314 -12.92949 -12.55346 -12.34827 -12.28588 -12.02724 -11.86626 -11.72451 -11.51580 -11.28183 -10.91722 -10.72340 -10.60664 -10.13486 -9.92540 -9.58335 -8.60005 -7.94443 -6.18125 -0.12744 0.47038 0.63505 1.43544 1.48724 1.55616 1.97377 2.42661 2.54594 2.89288 2.91609 3.10328 3.64392 3.80757 3.97441 4.14151 4.29219 4.35989 4.54944 4.55472 4.71975 4.76289 4.82944 4.96617 4.97791 5.15424 5.24132 5.32488 5.44794 5.54054 5.61898 5.76463 5.83531 5.98563 6.37494 6.41874 6.77300 6.84030 6.98483 7.47284 7.53907 8.93365 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.003575 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.891401 B = 7829.913087 C = 8511.836135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.178 3.822 11 N -0.669 5.669 12 C 0.557 3.443 13 O -0.600 6.600 14 C -0.236 4.236 15 C -0.023 4.023 16 C -0.181 4.181 17 C -0.010 4.010 18 C -0.200 4.200 19 Br -0.040 7.040 20 C 0.286 3.714 21 N -0.850 5.850 22 C -0.200 4.200 23 C -0.187 4.187 24 H 0.255 0.745 25 H 0.017 0.983 26 H 0.080 0.920 27 H 0.403 0.597 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.400 0.600 32 H 0.413 0.587 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -0.909 17.033 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.054 3.946 11 N -0.314 5.314 12 C 0.347 3.653 13 O -0.486 6.486 14 C -0.245 4.245 15 C -0.042 4.042 16 C -0.202 4.202 17 C -0.030 4.030 18 C -0.285 4.285 19 Br 0.044 6.956 20 C 0.170 3.830 21 N -0.397 5.397 22 C -0.238 4.238 23 C -0.224 4.224 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.239 0.761 28 H 0.154 0.846 29 H 0.182 0.818 30 H 0.181 0.819 31 H 0.231 0.769 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.195 -1.005 17.162 17.486 hybrid contribution 0.492 0.778 -0.906 1.291 sum -2.704 -0.226 16.257 16.482 Atomic orbital electron populations 1.70058 1.06788 1.26682 1.49143 1.25535 0.95267 1.01450 0.94021 0.85768 0.79136 0.80158 0.77900 1.21036 1.21846 1.18442 1.20694 0.92538 0.89403 1.51299 0.92172 1.19286 0.93452 0.90691 0.95869 1.20765 0.97773 0.95325 0.80763 1.45351 1.08849 1.65925 1.11290 1.18283 0.84293 0.77598 0.85143 1.90276 1.25331 1.55578 1.77368 1.19414 0.95464 1.15101 0.94497 1.21510 0.94653 0.91111 0.96975 1.21149 1.00753 1.05594 0.92691 1.21395 0.89338 0.91710 1.00585 1.21320 0.96223 1.17206 0.93724 1.96586 1.43861 1.98269 1.56865 1.17570 0.86057 0.88371 0.90998 1.43651 1.09735 1.70085 1.16268 1.22960 1.02040 1.06260 0.92586 1.22958 0.98487 0.98839 1.02082 0.93508 0.96449 0.90214 0.76105 0.84560 0.81780 0.81916 0.76929 0.74455 0.90717 0.90422 0.89620 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.23 10.18 21.45 0.22 -47.01 16 2 C 0.04 1.94 5.29 84.65 0.45 2.38 16 3 Si 0.94 40.14 29.54 68.60 2.03 42.17 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.50 -24.40 8.40 25.60 0.21 -24.19 16 8 H 0.06 2.89 7.82 -2.91 -0.02 2.86 16 9 C 0.01 0.35 2.04 -52.92 -0.11 0.24 16 10 C 0.18 8.33 4.61 86.38 0.40 8.73 16 11 N -0.67 -28.47 4.97 -466.36 -2.32 -30.79 16 12 C 0.56 23.66 7.74 86.67 0.67 24.33 16 13 O -0.60 -28.18 13.66 -4.04 -0.06 -28.23 16 14 C -0.24 -8.30 5.89 -19.98 -0.12 -8.42 16 15 C -0.02 -0.66 9.50 22.52 0.21 -0.45 16 16 C -0.18 -4.03 10.02 22.24 0.22 -3.80 16 17 C -0.01 -0.21 9.76 22.31 0.22 0.00 16 18 C -0.20 -5.23 6.24 22.41 0.14 -5.09 16 19 Br -0.04 -0.86 32.13 -20.37 -0.65 -1.52 16 20 C 0.29 9.18 6.76 38.71 0.26 9.44 16 21 N -0.85 -26.73 8.86 -50.89 -0.45 -27.18 16 22 C -0.20 -8.34 9.96 30.62 0.30 -8.04 16 23 C -0.19 -7.20 9.92 30.62 0.30 -6.90 16 24 H 0.26 13.49 8.32 -92.70 -0.77 12.72 16 25 H 0.02 0.80 8.08 -2.39 -0.02 0.79 16 26 H 0.08 4.36 5.98 -2.39 -0.01 4.35 16 27 H 0.40 15.96 6.20 -92.71 -0.58 15.38 16 28 H 0.14 3.83 6.50 -2.91 -0.02 3.81 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.40 10.49 7.25 -92.71 -0.67 9.82 16 32 H 0.41 14.97 5.36 -94.18 -0.50 14.46 16 33 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -57.58 320.97 1.34 -56.24 By element: Atomic # 1 Polarization: 48.70 SS G_CDS: -0.60 Total: 48.10 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 3.17 Total: -11.77 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -2.55 Total: -104.99 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.65 Total: -1.52 kcal Total: -57.58 1.34 -56.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448737512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.147 kcal (2) G-P(sol) polarization free energy of solvation -57.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds