Wall clock time and date at job start Tue Mar 31 2020 21:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86806 * 119.99593 * 2 1 4 4 H 1.48496 * 109.46905 * 239.99687 * 3 2 1 5 5 H 1.48500 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38653 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99341 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99412 * 185.06004 * 9 7 2 11 11 C 1.38941 * 120.03918 * 174.49092 * 10 9 7 12 12 C 1.38104 * 120.04316 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.12161 * 359.78265 * 12 11 10 14 14 C 1.38786 * 120.08174 * 0.46712 * 13 12 11 15 15 O 1.35896 * 120.02111 * 179.78559 * 14 13 12 16 16 S 1.52199 * 114.00254 * 269.72583 * 15 14 13 17 17 O 1.42096 * 106.40338 * 321.46221 * 16 15 14 18 18 O 1.42101 * 106.40273 * 188.54402 * 16 15 14 19 19 C 1.76197 * 107.21535 * 75.00025 * 16 15 14 20 20 C 1.38222 * 120.01423 * 90.00105 * 19 16 15 21 21 C 1.38220 * 120.02898 * 180.02562 * 20 19 16 22 22 C 1.38266 * 120.05171 * 359.97438 * 21 20 19 23 23 C 1.38176 * 120.02355 * 359.97438 * 22 21 20 24 24 C 1.38437 * 120.01608 * 269.99734 * 19 16 15 25 25 F 1.35104 * 120.02279 * 0.02562 * 24 19 16 26 26 C 1.38614 * 119.95295 * 359.51707 * 14 13 12 27 27 H 0.96994 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97612 * 359.97103 * 11 10 9 29 29 H 1.07998 * 119.93881 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.95960 * 180.25706 * 13 12 11 31 31 H 1.08005 * 119.98181 * 359.97438 * 20 19 16 32 32 H 1.08001 * 119.97537 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.98914 * 180.02562 * 22 21 20 34 34 H 1.08000 * 120.01263 * 179.74878 * 23 22 21 35 35 H 1.07999 * 120.05515 * 180.22927 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1056 11 6 1.4360 -4.7347 0.2273 12 6 2.1841 -5.8906 0.3348 13 6 3.5649 -5.8275 0.3171 14 6 4.2038 -4.6009 0.2009 15 8 5.5613 -4.5399 0.1880 16 16 6.1869 -4.3782 1.5660 17 8 5.3423 -3.4931 2.2888 18 8 7.5700 -4.1317 1.3524 19 6 6.0788 -5.9402 2.3743 20 6 7.1031 -6.8589 2.2430 21 6 7.0184 -8.0845 2.8765 22 6 5.9094 -8.3928 3.6426 23 6 4.8847 -7.4755 3.7761 24 6 4.9680 -6.2477 3.1411 25 9 3.9660 -5.3507 3.2697 26 6 3.4561 -3.4387 0.0925 27 1 -0.4850 0.8400 -0.0004 28 1 0.3573 -4.7870 0.2380 29 1 1.6894 -6.8460 0.4289 30 1 4.1473 -6.7335 0.3971 31 1 7.9697 -6.6193 1.6445 32 1 7.8195 -8.8015 2.7737 33 1 5.8445 -9.3505 4.1374 34 1 4.0167 -7.7181 4.3712 35 1 3.9516 -2.4837 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463861833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:03 Heat of formation + Delta-G solvation = -132.012988 kcal Electronic energy + Delta-G solvation = -27337.250320 eV Core-core repulsion = 23115.375558 eV Total energy + Delta-G solvation = -4221.874762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.17172 -42.18169 -40.36231 -39.98093 -38.60478 -37.78640 -37.31141 -34.37083 -32.59705 -31.62911 -31.54582 -30.72053 -27.50030 -24.83586 -24.64715 -23.88022 -23.53457 -21.70993 -20.22388 -20.13044 -19.27244 -18.95952 -18.27552 -17.97691 -17.37243 -17.08069 -16.93255 -16.72004 -16.16181 -16.00230 -15.85227 -15.64593 -15.25092 -15.07936 -14.84228 -14.39003 -14.24377 -14.09354 -13.65173 -13.59551 -13.55774 -13.50508 -13.38979 -13.03703 -12.84008 -12.68936 -12.57397 -12.44021 -12.17156 -11.83652 -11.59387 -10.88665 -10.67289 -9.98243 -9.92904 -9.27706 -8.55148 -6.24142 -1.12700 -0.48732 0.05942 0.20561 0.43658 1.18509 1.30884 1.40740 1.46024 2.12409 2.22751 2.43600 2.56475 2.86348 2.98790 3.07432 3.31313 3.54992 3.79597 3.87138 3.95347 4.01801 4.17233 4.20726 4.21929 4.39200 4.51588 4.73668 4.82225 4.92340 4.97323 5.06121 5.07696 5.16130 5.21867 5.34571 5.45998 5.72000 5.88397 5.91640 6.88670 7.59565 8.66117 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.004130 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.115643 B = 6778.631736 C = 7531.161689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.009 4.009 3 Si 1.006 2.994 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.422 4.422 8 H 0.092 0.908 9 O -0.211 6.211 10 C 0.132 3.868 11 C -0.169 4.169 12 C -0.041 4.041 13 C -0.187 4.187 14 C 0.093 3.907 15 O -0.661 6.661 16 S 2.673 3.327 17 O -0.975 6.975 18 O -0.955 6.955 19 C -0.747 4.747 20 C -0.002 4.002 21 C -0.142 4.142 22 C -0.014 4.014 23 C -0.174 4.174 24 C 0.176 3.824 25 F -0.130 7.130 26 C -0.230 4.230 27 H 0.277 0.723 28 H 0.143 0.857 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.168 0.832 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 -22.001 6.541 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.209 4.209 3 Si 0.825 3.175 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.109 0.891 9 O -0.116 6.116 10 C 0.080 3.920 11 C -0.189 4.189 12 C -0.058 4.058 13 C -0.208 4.208 14 C 0.052 3.948 15 O -0.620 6.620 16 S 2.770 3.230 17 O -0.973 6.973 18 O -0.953 6.953 19 C -0.837 4.837 20 C -0.021 4.021 21 C -0.160 4.160 22 C -0.031 4.031 23 C -0.193 4.193 24 C 0.155 3.845 25 F -0.108 7.108 26 C -0.251 4.251 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.205 0.795 30 H 0.180 0.820 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.206 0.794 34 H 0.186 0.814 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.950 -21.086 6.231 25.025 hybrid contribution 0.206 1.222 0.148 1.248 sum 12.155 -19.864 6.379 24.146 Atomic orbital electron populations 1.70122 1.07579 1.29206 1.47443 1.26435 0.96877 1.02249 0.95339 0.84836 0.77811 0.74934 0.79887 1.18038 1.18381 1.18901 1.21684 0.92229 0.81613 1.54293 0.89081 1.83962 1.34997 1.12227 1.80442 1.19647 0.89516 0.89126 0.93698 1.20867 1.01573 0.89482 1.06994 1.21111 0.91614 0.98553 0.94563 1.21228 0.96187 0.95029 1.08360 1.17956 0.74796 0.95166 1.06850 1.85620 1.27896 1.92083 1.56444 1.02256 0.73265 0.74933 0.72550 1.93680 1.67148 1.63883 1.72637 1.93553 1.32296 1.84945 1.84521 1.30619 1.05596 1.25854 1.21582 1.21201 0.94462 0.92068 0.94350 1.21848 1.00380 0.96364 0.97434 1.21967 0.89932 0.99284 0.91954 1.21690 1.03534 0.91555 1.02534 1.17607 0.83293 0.88624 0.94967 1.91695 1.58507 1.66964 1.93639 1.21156 0.94593 0.98383 1.11008 0.91378 0.83912 0.79536 0.82046 0.82423 0.80182 0.79413 0.81445 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.42 13.67 21.61 0.30 -55.12 16 2 C -0.01 -0.55 5.49 84.83 0.47 -0.09 16 3 Si 1.01 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.42 -25.61 9.49 67.92 0.64 -24.97 16 8 H 0.09 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.21 -12.68 9.76 -22.81 -0.22 -12.90 16 10 C 0.13 6.61 6.65 22.56 0.15 6.76 16 11 C -0.17 -6.57 9.99 22.41 0.22 -6.35 16 12 C -0.04 -1.18 10.03 22.24 0.22 -0.96 16 13 C -0.19 -5.78 7.86 22.40 0.18 -5.61 16 14 C 0.09 3.72 4.78 22.49 0.11 3.82 16 15 O -0.66 -24.61 10.16 -61.66 -0.63 -25.23 16 16 S 2.67 96.25 5.37 -56.49 -0.30 95.94 16 17 O -0.97 -43.19 14.52 -118.78 -1.72 -44.91 16 18 O -0.95 -35.62 17.28 -118.78 -2.05 -37.67 16 19 C -0.75 -19.69 5.31 22.31 0.12 -19.57 16 20 C 0.00 -0.03 9.52 22.26 0.21 0.18 16 21 C -0.14 -1.40 10.04 22.27 0.22 -1.18 16 22 C -0.01 -0.12 10.04 22.26 0.22 0.11 16 23 C -0.17 -2.67 10.03 22.31 0.22 -2.44 16 24 C 0.18 4.50 6.25 22.38 0.14 4.64 16 25 F -0.13 -4.42 14.71 44.97 0.66 -3.75 16 26 C -0.23 -11.12 8.31 22.48 0.19 -10.94 16 27 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.16 3.65 7.97 -2.91 -0.02 3.62 16 31 H 0.16 2.48 7.62 -2.91 -0.02 2.46 16 32 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.12 6.12 5.64 -2.91 -0.02 6.10 16 Total: -1.00 -84.38 325.15 2.53 -81.85 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.16 Total: 11.58 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.32 Total: -56.58 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -116.09 SS G_CDS: -4.63 Total: -120.72 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.66 Total: -3.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 96.25 SS G_CDS: -0.30 Total: 95.94 kcal Total: -84.38 2.53 -81.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463861833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.161 kcal (2) G-P(sol) polarization free energy of solvation -84.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds