Wall clock time and date at job start Tue Mar 31 2020 21:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 115.54870 * 145.03863 * 3 2 1 5 5 C 1.34775 * 120.00119 * 34.41136 * 4 3 2 6 6 O 1.21570 * 120.00077 * 0.02562 * 5 4 3 7 7 C 1.47698 * 119.99818 * 180.02562 * 5 4 3 8 8 C 1.39653 * 120.16625 * 0.02562 * 7 5 4 9 9 C 1.37855 * 119.87681 * 179.97438 * 8 7 5 10 10 S 1.76206 * 119.89213 * 179.72602 * 9 8 7 11 11 O 1.42101 * 106.40244 * 203.54288 * 10 9 8 12 12 O 1.42106 * 106.39960 * 336.45880 * 10 9 8 13 13 C 1.76197 * 107.22004 * 89.99947 * 10 9 8 14 14 H 1.07995 * 119.99760 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99801 * 180.02562 * 13 10 9 16 16 N 1.31505 * 120.00188 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99658 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47226 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47088 * 119.99876 * 17 15 13 20 20 H 1.48498 * 109.47176 * 240.00167 * 17 15 13 21 21 C 1.38458 * 120.21972 * 0.02562 * 9 8 7 22 22 C 1.38200 * 120.34073 * 0.02562 * 21 9 8 23 23 C 1.38327 * 120.11637 * 359.97438 * 22 21 9 24 24 F 1.35093 * 120.11143 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.50113 * 290.70653 * 3 2 1 26 26 C 1.52998 * 117.49889 * 359.36695 * 3 2 1 27 27 H 0.97005 * 120.00048 * 214.41991 * 4 3 2 28 28 H 1.08000 * 120.06635 * 0.02562 * 8 7 5 29 29 H 0.97000 * 120.00037 * 180.02562 * 16 15 13 30 30 H 1.08004 * 119.83524 * 179.97438 * 21 9 8 31 31 H 1.08003 * 119.94662 * 179.97438 * 22 21 9 32 32 H 1.09002 * 117.49894 * 215.00566 * 25 3 2 33 33 H 1.09008 * 117.49315 * 0.02562 * 25 3 2 34 34 H 1.08997 * 117.50144 * 359.97438 * 26 3 2 35 35 H 1.09002 * 117.49800 * 144.97562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.2393 1.0841 -0.7574 5 6 2.6606 2.3005 -0.8032 6 8 1.6150 2.4987 -0.2156 7 6 3.2969 3.3926 -1.5673 8 6 4.4978 3.1686 -2.2440 9 6 5.0862 4.1921 -2.9557 10 16 6.6052 3.9120 -3.8037 11 8 7.2230 5.1831 -3.9508 12 8 7.2310 2.8142 -3.1537 13 6 6.2018 3.3637 -5.4290 14 1 5.1678 3.2617 -5.7232 15 6 7.2064 3.0651 -6.3249 16 7 8.4655 3.1899 -5.9666 17 14 6.7787 2.4846 -8.0481 18 1 5.3024 2.4291 -8.1997 19 1 7.3438 3.4306 -9.0437 20 1 7.3498 1.1320 -8.2708 21 6 4.4908 5.4413 -3.0014 22 6 3.3029 5.6733 -2.3342 23 6 2.7003 4.6563 -1.6158 24 9 1.5389 4.8831 -0.9641 25 6 3.3147 -0.4789 1.2695 26 6 3.3150 -1.3561 0.0150 27 1 4.0738 0.9261 -1.2260 28 1 4.9643 2.1952 -2.2105 29 1 9.1722 2.9802 -6.5971 30 1 4.9574 6.2389 -3.5606 31 1 2.8442 6.6503 -2.3738 32 1 4.2493 0.0118 1.5411 33 1 2.6895 -0.7953 2.1045 34 1 2.6902 -2.2491 0.0253 35 1 4.2498 -1.4426 -0.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465136472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:12 Heat of formation + Delta-G solvation = -74.771559 kcal Electronic energy + Delta-G solvation = -26167.153233 eV Core-core repulsion = 21980.053397 eV Total energy + Delta-G solvation = -4187.099836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.97827 -40.54516 -38.81758 -37.67216 -35.80365 -35.49937 -34.20807 -33.47946 -33.27242 -31.18547 -30.69837 -26.32469 -25.12388 -23.87609 -23.04363 -22.94420 -21.42029 -19.14305 -18.49747 -18.24357 -17.39417 -16.79753 -16.56847 -16.21378 -15.91901 -15.72035 -15.08402 -14.83636 -14.78510 -14.49531 -14.12383 -14.02787 -13.72748 -13.61120 -13.16679 -13.02637 -12.95499 -12.83982 -12.46832 -12.10936 -12.04124 -11.62158 -11.46660 -11.37408 -11.34831 -11.24706 -10.69302 -10.52105 -10.43085 -10.25803 -9.87434 -9.41730 -9.41693 -9.21418 -9.13929 -8.87860 -6.88836 -5.53429 0.53005 0.89808 1.84626 2.17635 2.32252 2.58735 2.94596 2.96045 3.05623 3.12290 3.39098 3.46144 3.61976 3.93677 4.01489 4.23393 4.32143 4.44366 4.48262 4.57385 4.92340 4.95632 5.11401 5.16185 5.19024 5.39887 5.41213 5.59333 5.60300 5.60796 5.78392 5.97058 5.99194 6.03450 6.63116 6.65987 7.04551 7.13819 7.44932 7.76446 7.87625 8.69732 10.05910 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003826 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.300364 B = 7316.654491 C = 8362.117138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.244 3.756 3 C 0.182 3.818 4 N -0.691 5.691 5 C 0.568 3.432 6 O -0.513 6.513 7 C -0.204 4.204 8 C 0.037 3.963 9 C -0.663 4.663 10 S 2.603 3.397 11 O -0.977 6.977 12 O -0.979 6.979 13 C -1.002 5.002 14 H 0.107 0.893 15 C 0.134 3.866 16 N -0.839 5.839 17 Si 0.923 3.077 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.269 1.269 21 C 0.032 3.968 22 C -0.187 4.187 23 C 0.195 3.805 24 F -0.113 7.113 25 C -0.154 4.154 26 C -0.143 4.143 27 H 0.418 0.582 28 H 0.152 0.848 29 H 0.293 0.707 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -4.833 7.918 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.074 4.074 3 C 0.091 3.909 4 N -0.347 5.347 5 C 0.356 3.644 6 O -0.388 6.388 7 C -0.208 4.208 8 C 0.017 3.983 9 C -0.743 4.743 10 S 2.782 3.218 11 O -0.974 6.974 12 O -0.976 6.976 13 C -1.136 5.136 14 H 0.125 0.875 15 C -0.085 4.085 16 N -0.468 5.468 17 Si 0.747 3.253 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.194 1.194 21 C 0.014 3.986 22 C -0.206 4.206 23 C 0.174 3.826 24 F -0.091 7.091 25 C -0.194 4.194 26 C -0.182 4.182 27 H 0.258 0.742 28 H 0.170 0.830 29 H 0.104 0.896 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.015 -4.508 8.763 12.096 hybrid contribution -0.374 -0.203 -1.280 1.349 sum -7.389 -4.712 7.483 11.524 Atomic orbital electron populations 1.81168 1.11805 1.07839 1.07105 1.27061 0.92661 0.93459 0.94256 1.16674 0.81435 0.91355 1.01433 1.45219 1.27487 1.08513 1.53440 1.18062 0.84253 0.81914 0.80132 1.90869 1.22082 1.81635 1.44247 1.19853 0.99621 0.93766 1.07600 1.20993 0.90193 0.98754 0.88320 1.31837 1.27271 0.99760 1.15396 1.01295 0.70763 0.73883 0.75831 1.93360 1.72324 1.44038 1.87722 1.93345 1.72083 1.54089 1.78113 1.30098 1.02066 1.62217 1.19174 0.87481 1.24757 0.93360 0.89795 1.00611 1.69885 0.99933 1.39055 1.37961 0.86075 0.79940 0.78964 0.80363 1.18454 1.19412 1.19408 1.21149 0.91072 0.95616 0.90785 1.21284 0.98255 0.99521 1.01587 1.17831 0.81603 0.92682 0.90485 1.91598 1.44765 1.94806 1.77955 1.23699 1.02856 1.01190 0.91645 1.23605 1.02483 0.91556 1.00574 0.74201 0.83045 0.89617 0.82395 0.83307 0.86135 0.87045 0.86560 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.58 18.54 42.15 0.78 -5.80 16 2 C 0.24 3.37 12.83 -20.76 -0.27 3.10 16 3 C 0.18 1.83 2.86 -134.61 -0.38 1.44 16 4 N -0.69 -7.81 5.53 -51.21 -0.28 -8.09 16 5 C 0.57 8.58 7.61 -12.40 -0.09 8.48 16 6 O -0.51 -9.36 13.51 5.30 0.07 -9.29 16 7 C -0.20 -3.14 5.88 -104.91 -0.62 -3.76 16 8 C 0.04 0.57 9.00 -39.19 -0.35 0.22 16 9 C -0.66 -11.86 5.81 -39.64 -0.23 -12.09 16 10 S 2.60 60.09 4.65 -107.50 -0.50 59.59 16 11 O -0.98 -25.02 17.14 -57.17 -0.98 -26.00 16 12 O -0.98 -24.24 17.15 -57.17 -0.98 -25.22 16 13 C -1.00 -24.41 9.58 30.60 0.29 -24.12 16 14 H 0.11 2.38 7.81 -52.49 -0.41 1.97 16 15 C 0.13 3.35 5.46 -17.82 -0.10 3.25 16 16 N -0.84 -22.29 13.19 55.43 0.73 -21.56 16 17 Si 0.92 18.68 29.54 -169.99 -5.02 13.66 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 C 0.03 0.51 9.51 -39.51 -0.38 0.13 16 22 C -0.19 -2.60 10.01 -39.56 -0.40 -2.99 16 23 C 0.19 3.02 7.29 -38.95 -0.28 2.74 16 24 F -0.11 -1.87 15.55 2.25 0.04 -1.84 16 25 C -0.15 -1.02 10.14 -26.69 -0.27 -1.29 16 26 C -0.14 -0.82 10.10 -26.69 -0.27 -1.09 16 27 H 0.42 3.71 6.81 -40.82 -0.28 3.43 16 28 H 0.15 2.02 5.96 -52.49 -0.31 1.70 16 29 H 0.29 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.16 2.27 7.60 -52.48 -0.40 1.87 16 31 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -35.39 339.32 -7.03 -42.42 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -2.65 Total: 2.99 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.35 Total: -25.97 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 1.23 Total: -35.45 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.89 Total: -60.51 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: 60.09 SS G_CDS: -0.50 Total: 59.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.39 -7.03 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465136472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.355 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds