Wall clock time and date at job start Tue Mar 31 2020 20:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 N 1.32931 * 119.70272 * 140.59596 * 3 2 1 5 5 C 1.32045 * 121.53356 * 179.97438 * 4 3 2 6 6 N 1.39397 * 119.60723 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00201 * 5.38824 * 6 5 4 8 8 O 1.21569 * 119.99939 * 354.89589 * 7 6 5 9 9 N 1.34774 * 120.00000 * 174.89752 * 7 6 5 10 10 C 1.46493 * 120.00187 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47657 * 180.02562 * 10 9 7 12 12 C 1.50690 * 109.47289 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00545 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99933 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99805 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47555 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46767 * 120.00381 * 16 14 12 19 19 H 1.48501 * 109.47079 * 239.99892 * 16 14 12 20 20 C 1.39331 * 120.77706 * 0.25205 * 5 4 3 21 21 C 1.38343 * 119.34363 * 359.47192 * 20 5 4 22 22 C 1.38810 * 118.57472 * 0.51692 * 21 20 5 23 23 Br 1.89100 * 120.41000 * 179.73000 * 22 21 20 24 24 H 0.97004 * 120.00052 * 185.38285 * 6 5 4 25 25 H 0.96999 * 120.00024 * 359.72065 * 9 7 6 26 26 H 1.09001 * 109.47171 * 299.99675 * 10 9 7 27 27 H 1.09007 * 109.47372 * 59.99680 * 10 9 7 28 28 H 1.09001 * 109.46452 * 299.99977 * 11 10 9 29 29 H 1.09001 * 109.47091 * 59.99853 * 11 10 9 30 30 H 0.97000 * 119.99831 * 179.97438 * 15 14 12 31 31 H 1.08009 * 120.32894 * 179.72153 * 20 5 4 32 32 H 1.07997 * 120.71082 * 180.24770 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2263 0.8931 -0.7330 5 6 4.5460 0.9266 -0.7593 6 7 5.1952 1.8795 -1.5427 7 6 4.4807 2.8274 -2.1811 8 8 3.2658 2.7968 -2.1500 9 7 5.1130 3.8091 -2.8540 10 6 4.3364 4.8390 -3.5485 11 6 5.2891 5.8250 -4.2277 12 6 4.4901 6.8847 -4.9414 13 1 3.4108 6.8576 -4.9138 14 6 5.1371 7.8891 -5.6298 15 7 6.4513 7.9219 -5.6638 16 14 4.1467 9.2024 -6.5151 17 1 2.6972 8.9414 -6.3253 18 1 4.4859 10.5370 -5.9592 19 1 4.4698 9.1731 -7.9643 20 6 5.2973 0.0171 -0.0180 21 6 4.6472 -0.9229 0.7616 22 6 3.2592 -0.9338 0.7693 23 35 2.3176 -2.2010 1.8102 24 1 6.1613 1.8606 -1.6283 25 1 6.0824 3.8358 -2.8755 26 1 3.7023 4.3702 -4.3009 27 1 3.7140 5.3714 -2.8292 28 1 5.9235 6.2938 -3.4755 29 1 5.9111 5.2923 -4.9470 30 1 6.9064 8.6283 -6.1484 31 1 6.3765 0.0482 -0.0484 32 1 5.2077 -1.6358 1.3482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467120285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:06 Heat of formation + Delta-G solvation = 54.558537 kcal Electronic energy + Delta-G solvation = -19388.612723 eV Core-core repulsion = 16010.569631 eV Total energy + Delta-G solvation = -3378.043093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29125 -39.53457 -36.85924 -35.48738 -34.71861 -33.44248 -32.89321 -32.07156 -30.05050 -29.01379 -25.66172 -24.89100 -23.48160 -21.29098 -20.83912 -20.23309 -18.38726 -17.28645 -16.55001 -16.34861 -16.23292 -15.89388 -14.94876 -14.65793 -14.54326 -14.14183 -13.67192 -13.62317 -13.45049 -13.04148 -13.02723 -12.83254 -12.33018 -12.03802 -11.25093 -11.09694 -10.94927 -10.66343 -10.62923 -10.48372 -10.37513 -10.29150 -9.72724 -9.51732 -9.27589 -8.78890 -8.53770 -8.37718 -6.13975 -4.16558 0.00809 0.60287 1.02019 2.10030 2.44341 2.51087 3.14097 3.25502 3.26388 3.34293 3.39835 3.60874 4.10009 4.18285 4.19911 4.38958 4.51940 4.71983 5.09649 5.20704 5.23711 5.51494 6.06840 6.23325 6.29546 6.60788 6.67814 6.78501 7.10488 7.35331 7.49434 7.55200 7.84892 8.06785 8.24671 8.69226 8.89768 9.48727 10.97679 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.035264 B = 0.002064 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.821678 B =13564.445602 C =14327.499559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C 0.261 3.739 3 C 0.267 3.733 4 N -0.436 5.436 5 C 0.413 3.587 6 N -0.667 5.667 7 C 0.684 3.316 8 O -0.530 6.530 9 N -0.729 5.729 10 C 0.138 3.862 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.182 4.182 21 C -0.013 4.013 22 C -0.149 4.149 23 Br -0.023 7.023 24 H 0.418 0.582 25 H 0.395 0.605 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.156 0.844 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -23.526 16.993 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.040 5.040 2 C -0.057 4.057 3 C 0.124 3.876 4 N -0.152 5.152 5 C 0.177 3.823 6 N -0.316 5.316 7 C 0.383 3.617 8 O -0.400 6.400 9 N -0.384 5.384 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.208 4.208 21 C -0.040 4.040 22 C -0.236 4.236 23 Br 0.062 6.938 24 H 0.255 0.745 25 H 0.228 0.772 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.174 0.826 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.990 -23.117 16.702 28.537 hybrid contribution 1.794 0.598 -0.423 1.938 sum 0.804 -22.520 16.279 27.799 Atomic orbital electron populations 1.81192 1.11136 1.05910 1.05737 1.24670 0.91476 0.94658 0.94906 1.16011 0.86601 0.91473 0.93501 1.67735 1.07997 1.20812 1.18646 1.18123 0.87667 0.87692 0.88791 1.43013 1.10828 1.28759 1.48957 1.16192 0.85958 0.79960 0.79622 1.91062 1.10681 1.75210 1.63093 1.45617 1.10316 1.27749 1.54696 1.21711 0.94937 0.87044 0.94683 1.19336 0.94600 0.92951 0.95557 1.21073 0.93329 1.09553 1.32011 0.92112 1.24992 0.94954 0.97995 0.96340 1.69957 1.07253 1.33617 1.42493 0.86453 0.80441 0.81346 0.79323 1.19536 1.20917 1.20912 1.21720 1.01936 0.97210 0.99941 1.21268 0.91117 0.96431 0.95146 1.22641 0.95971 1.00475 1.04523 1.96800 1.74981 1.53887 1.68169 0.74461 0.77157 0.92381 0.92400 0.95880 0.95871 0.92873 0.82616 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -5.58 18.54 41.83 0.78 -4.80 16 2 C 0.26 3.66 14.39 -22.47 -0.32 3.34 16 3 C 0.27 3.27 6.58 -85.04 -0.56 2.71 16 4 N -0.44 -6.19 7.79 -10.24 -0.08 -6.27 16 5 C 0.41 4.40 7.42 -154.86 -1.15 3.25 16 6 N -0.67 -7.00 5.39 -15.81 -0.09 -7.09 16 7 C 0.68 10.83 8.52 -86.92 -0.74 10.09 16 8 O -0.53 -10.88 14.60 5.30 0.08 -10.80 16 9 N -0.73 -11.49 5.56 -65.23 -0.36 -11.86 16 10 C 0.14 2.81 5.61 -4.04 -0.02 2.78 16 11 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 12 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.18 -1.09 9.94 -39.14 -0.39 -1.47 16 21 C -0.01 -0.07 9.92 -39.33 -0.39 -0.46 16 22 C -0.15 -1.31 6.27 -38.94 -0.24 -1.55 16 23 Br -0.02 -0.19 32.64 -68.01 -2.22 -2.41 16 24 H 0.42 2.45 8.72 -40.82 -0.36 2.10 16 25 H 0.40 5.00 8.49 -40.82 -0.35 4.65 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.16 0.32 8.06 -52.48 -0.42 -0.10 16 32 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -34.49 318.94 -8.53 -43.01 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -2.78 Total: -1.84 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -4.37 Total: 5.95 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.98 Total: -54.81 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.22 Total: -2.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.49 -8.53 -43.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467120285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.571 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds