Wall clock time and date at job start Tue Mar 31 2020 20:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 N 1.32931 * 119.70272 * 140.59596 * 3 2 1 5 5 C 1.32045 * 121.53356 * 179.97438 * 4 3 2 6 6 N 1.39397 * 119.60723 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00201 * 5.38824 * 6 5 4 8 8 O 1.21569 * 119.99939 * 354.89589 * 7 6 5 9 9 N 1.34774 * 120.00000 * 174.89752 * 7 6 5 10 10 C 1.46493 * 120.00187 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47657 * 180.02562 * 10 9 7 12 12 C 1.50690 * 109.47289 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00545 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99933 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99805 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47555 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46767 * 120.00381 * 16 14 12 19 19 H 1.48501 * 109.47079 * 239.99892 * 16 14 12 20 20 C 1.39331 * 120.77706 * 0.25205 * 5 4 3 21 21 C 1.38343 * 119.34363 * 359.47192 * 20 5 4 22 22 C 1.38810 * 118.57472 * 0.51692 * 21 20 5 23 23 Br 1.89100 * 120.41000 * 179.73000 * 22 21 20 24 24 H 0.97004 * 120.00052 * 185.38285 * 6 5 4 25 25 H 0.96999 * 120.00024 * 359.72065 * 9 7 6 26 26 H 1.09001 * 109.47171 * 299.99675 * 10 9 7 27 27 H 1.09007 * 109.47372 * 59.99680 * 10 9 7 28 28 H 1.09001 * 109.46452 * 299.99977 * 11 10 9 29 29 H 1.09001 * 109.47091 * 59.99853 * 11 10 9 30 30 H 0.97000 * 119.99831 * 179.97438 * 15 14 12 31 31 H 1.08009 * 120.32894 * 179.72153 * 20 5 4 32 32 H 1.07997 * 120.71082 * 180.24770 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2263 0.8931 -0.7330 5 6 4.5460 0.9266 -0.7593 6 7 5.1952 1.8795 -1.5427 7 6 4.4807 2.8274 -2.1811 8 8 3.2658 2.7968 -2.1500 9 7 5.1130 3.8091 -2.8540 10 6 4.3364 4.8390 -3.5485 11 6 5.2891 5.8250 -4.2277 12 6 4.4901 6.8847 -4.9414 13 1 3.4108 6.8576 -4.9138 14 6 5.1371 7.8891 -5.6298 15 7 6.4513 7.9219 -5.6638 16 14 4.1467 9.2024 -6.5151 17 1 2.6972 8.9414 -6.3253 18 1 4.4859 10.5370 -5.9592 19 1 4.4698 9.1731 -7.9643 20 6 5.2973 0.0171 -0.0180 21 6 4.6472 -0.9229 0.7616 22 6 3.2592 -0.9338 0.7693 23 35 2.3176 -2.2010 1.8102 24 1 6.1613 1.8606 -1.6283 25 1 6.0824 3.8358 -2.8755 26 1 3.7023 4.3702 -4.3009 27 1 3.7140 5.3714 -2.8292 28 1 5.9235 6.2938 -3.4755 29 1 5.9111 5.2923 -4.9470 30 1 6.9064 8.6283 -6.1484 31 1 6.3765 0.0482 -0.0484 32 1 5.2077 -1.6358 1.3482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467120285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:06 Heat of formation + Delta-G solvation = 30.208458 kcal Electronic energy + Delta-G solvation = -19389.668622 eV Core-core repulsion = 16010.569631 eV Total energy + Delta-G solvation = -3379.098991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14850 -40.64622 -37.93054 -36.79016 -36.01574 -34.85615 -34.10630 -32.88450 -31.52358 -30.08840 -26.95770 -26.15225 -24.44875 -22.90640 -22.08430 -21.11822 -19.54458 -18.52678 -18.10613 -17.25719 -16.98785 -16.93634 -16.47122 -16.06892 -16.00086 -15.16931 -15.08797 -14.79454 -14.34591 -14.26759 -14.19620 -14.04026 -13.45656 -13.20107 -13.01442 -12.81355 -12.52556 -12.23057 -11.86028 -11.62174 -11.49271 -11.46679 -11.31549 -10.90956 -10.59863 -10.47082 -10.07402 -9.37706 -8.24121 -6.33179 -0.74325 -0.03910 0.32906 1.13866 1.40614 1.41914 1.47794 1.54389 1.55680 2.10266 2.26234 2.41106 2.70723 3.09262 3.11201 3.54304 3.57732 3.77572 4.12613 4.42844 4.52369 4.52877 4.73710 4.87794 4.99492 5.26283 5.46119 5.50147 5.61632 5.66783 5.81659 6.07920 6.17975 6.50510 6.80067 7.07143 7.35943 7.51348 8.87752 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.035264 B = 0.002064 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.821678 B =13564.445602 C =14327.499559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.271 3.729 3 C 0.230 3.770 4 N -0.488 5.488 5 C 0.384 3.616 6 N -0.648 5.648 7 C 0.687 3.313 8 O -0.582 6.582 9 N -0.722 5.722 10 C 0.160 3.840 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.138 4.138 21 C -0.002 4.002 22 C -0.133 4.133 23 Br -0.017 7.017 24 H 0.442 0.558 25 H 0.412 0.588 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.266 0.734 31 H 0.210 0.790 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -24.925 18.081 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.047 4.047 3 C 0.089 3.911 4 N -0.205 5.205 5 C 0.149 3.851 6 N -0.299 5.299 7 C 0.386 3.614 8 O -0.457 6.457 9 N -0.378 5.378 10 C 0.036 3.964 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.074 0.926 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.163 4.163 21 C -0.029 4.029 22 C -0.221 4.221 23 Br 0.067 6.933 24 H 0.284 0.716 25 H 0.248 0.752 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.408 -24.575 17.830 30.394 hybrid contribution 1.149 0.918 -0.677 1.619 sum 2.557 -23.657 17.153 29.333 Atomic orbital electron populations 1.81163 1.12316 1.07472 1.07442 1.25266 0.92274 0.93460 0.93679 1.15964 0.85570 0.93494 0.96045 1.67426 1.10455 1.22394 1.20188 1.18541 0.87195 0.89069 0.90336 1.42556 1.11635 1.27522 1.48234 1.16273 0.85444 0.80349 0.79307 1.91038 1.13206 1.76574 1.64881 1.45194 1.10852 1.27148 1.54600 1.21102 0.94054 0.87242 0.93993 1.19126 0.94429 0.92844 0.94888 1.21485 0.93547 1.10780 1.32600 0.92635 1.25796 0.95989 1.00085 0.97066 1.70040 1.08537 1.34521 1.43255 0.85461 0.78967 0.78721 0.78291 1.19325 1.20204 1.20194 1.22233 1.04047 0.93854 0.96134 1.21866 0.89614 0.96690 0.94711 1.22842 0.97332 0.99013 1.02866 1.96827 1.75542 1.53220 1.67673 0.71619 0.75154 0.93846 0.93890 0.96889 0.96863 0.92528 0.77307 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -13.24 18.54 19.00 0.35 -12.89 16 2 C 0.27 7.95 14.39 88.34 1.27 9.22 16 3 C 0.23 5.61 6.58 40.50 0.27 5.88 16 4 N -0.49 -13.83 7.79 -186.33 -1.45 -15.28 16 5 C 0.38 7.30 7.42 133.08 0.99 8.29 16 6 N -0.65 -12.24 5.39 -322.19 -1.74 -13.98 16 7 C 0.69 21.60 8.52 179.05 1.53 23.13 16 8 O -0.58 -24.70 14.60 -3.93 -0.06 -24.75 16 9 N -0.72 -22.58 5.56 -478.55 -2.66 -25.24 16 10 C 0.16 6.66 5.61 86.38 0.48 7.14 16 11 C 0.02 1.19 5.09 29.85 0.15 1.34 16 12 C -0.55 -30.01 9.11 25.60 0.23 -29.77 16 13 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.01 0.53 5.46 84.66 0.46 0.99 16 15 N -0.92 -52.87 13.29 21.45 0.28 -52.58 16 16 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.14 -0.94 9.94 22.56 0.22 -0.71 16 21 C 0.00 -0.02 9.92 22.43 0.22 0.21 16 22 C -0.13 -2.05 6.27 22.68 0.14 -1.90 16 23 Br -0.02 -0.26 32.64 -20.37 -0.66 -0.92 16 24 H 0.44 3.62 8.72 -92.71 -0.81 2.81 16 25 H 0.41 9.94 8.49 -92.71 -0.79 9.15 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.21 -0.77 8.06 -2.91 -0.02 -0.79 16 32 H 0.21 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: -1.00 -79.87 318.94 1.67 -78.20 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -0.39 Total: -1.75 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 5.97 Total: 23.81 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -5.21 Total: -119.97 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.66 Total: -0.92 kcal Total: -79.87 1.67 -78.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467120285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.410 kcal (2) G-P(sol) polarization free energy of solvation -79.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds