Wall clock time and date at job start Tue Mar 31 2020 21:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48502 * 109.47227 * 270.00470 * 3 2 1 5 5 H 1.48503 * 109.47014 * 30.00601 * 3 2 1 6 6 H 1.48501 * 109.47012 * 150.00396 * 3 2 1 7 7 C 1.38652 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99862 * 359.97438 * 7 2 1 9 9 O 1.34822 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.35762 * 117.00490 * 185.05948 * 9 7 2 11 11 C 1.38904 * 120.05040 * 354.39878 * 10 9 7 12 12 C 1.38073 * 119.93806 * 179.67315 * 11 10 9 13 13 C 1.38430 * 120.05755 * 0.62650 * 12 11 10 14 14 Cl 1.73602 * 119.94560 * 179.70028 * 13 12 11 15 15 C 1.38386 * 120.11266 * 359.66912 * 13 12 11 16 16 C 1.38121 * 120.05632 * 0.02562 * 15 13 12 17 17 C 1.50701 * 120.02916 * 179.97438 * 16 15 13 18 18 S 1.80997 * 109.46716 * 270.01756 * 17 16 15 19 19 C 1.76210 * 99.99662 * 180.02562 * 18 17 16 20 20 N 1.33189 * 120.04808 * 359.72337 * 19 18 17 21 21 C 1.32112 * 120.07606 * 179.76879 * 20 19 18 22 22 N 1.32184 * 120.18496 * 0.50857 * 21 20 19 23 23 C 1.33112 * 120.10044 * 359.74587 * 22 21 20 24 24 N 1.37997 * 120.04294 * 179.97438 * 23 22 21 25 25 N 1.32854 * 119.91634 * 0.02562 * 23 22 21 26 26 H 0.97001 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.02858 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.96916 * 180.31613 * 12 11 10 29 29 H 1.07998 * 119.97308 * 180.02562 * 15 13 12 30 30 H 1.09000 * 109.47246 * 30.01684 * 17 16 15 31 31 H 1.08998 * 109.46785 * 150.01946 * 17 16 15 32 32 H 1.08007 * 119.90871 * 180.25574 * 21 20 19 33 33 H 0.96995 * 120.00121 * 180.02562 * 24 23 22 34 34 H 0.97006 * 120.00020 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7002 6 1 3.5473 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3570 -1.2009 -0.0011 10 6 3.9733 -2.4058 -0.1082 11 6 3.2229 -3.5746 -0.0939 12 6 3.8515 -4.7985 -0.2098 13 6 5.2294 -4.8619 -0.3273 14 17 6.0173 -6.4027 -0.4651 15 6 5.9797 -3.6992 -0.3357 16 6 5.3552 -2.4721 -0.2263 17 6 6.1730 -1.2063 -0.2349 18 16 6.6419 -0.7795 1.4604 19 6 7.5603 0.6944 1.1619 20 7 7.7153 1.1432 -0.0825 21 6 8.3999 2.2506 -0.3065 22 7 8.9421 2.9121 0.7013 23 6 8.7961 2.4673 1.9474 24 7 9.3631 3.1585 2.9986 25 7 8.1046 1.3566 2.1777 26 1 -0.4850 0.8401 0.0004 27 1 2.1484 -3.5259 0.0030 28 1 3.2681 -5.7074 -0.2039 29 1 7.0545 -3.7513 -0.4278 30 1 7.0714 -1.3582 -0.8331 31 1 5.5836 -0.3959 -0.6638 32 1 8.5203 2.6143 -1.3164 33 1 9.2566 2.8337 3.9063 34 1 9.8682 3.9693 2.8297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473100887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:31 Heat of formation + Delta-G solvation = 57.831121 kcal Electronic energy + Delta-G solvation = -23206.899607 eV Core-core repulsion = 19486.178981 eV Total energy + Delta-G solvation = -3720.720626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40942 -39.61483 -37.12215 -35.91337 -35.76685 -33.79355 -32.74783 -32.37438 -31.71773 -29.31342 -26.98008 -25.52891 -25.30314 -24.30667 -21.90179 -21.18272 -19.15581 -19.02887 -18.14526 -17.41952 -16.40369 -16.10972 -15.78565 -15.50534 -15.38090 -15.04736 -14.51945 -14.32099 -14.11766 -13.99982 -13.59922 -12.96604 -12.77771 -12.71001 -12.55796 -12.43021 -12.19184 -11.48904 -11.28519 -11.16898 -11.11525 -10.83152 -10.58483 -10.37248 -10.32034 -9.76102 -9.63174 -9.52191 -9.15825 -9.02367 -8.47472 -7.78049 -7.51916 -6.61498 -4.27140 0.77430 1.05207 1.10511 1.78119 1.84790 2.43998 2.65012 2.88501 3.11177 3.15706 3.30950 3.77931 3.86987 4.08514 4.16420 4.29459 4.52839 4.84458 4.91063 5.00047 5.24698 5.42562 5.61296 5.87072 5.91582 5.93564 6.17650 6.25964 6.39726 6.43739 6.63114 6.70369 6.91029 6.91791 7.22226 7.22705 7.53757 7.79672 8.25509 8.72195 9.28479 10.44706 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004740 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.301967 B = 5905.584253 C = 8794.922750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.072 3.928 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.391 4.391 8 H 0.111 0.889 9 O -0.194 6.194 10 C 0.178 3.822 11 C -0.209 4.209 12 C -0.051 4.051 13 C -0.120 4.120 14 Cl -0.099 7.099 15 C -0.041 4.041 16 C -0.157 4.157 17 C -0.043 4.043 18 S 0.039 5.961 19 C 0.372 3.628 20 N -0.599 5.599 21 C 0.391 3.609 22 N -0.621 5.621 23 C 0.606 3.394 24 N -0.806 5.806 25 N -0.593 5.593 26 H 0.283 0.717 27 H 0.146 0.854 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.208 0.792 33 H 0.417 0.583 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.335 0.679 1.437 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.129 0.871 9 O -0.097 6.097 10 C 0.122 3.878 11 C -0.229 4.229 12 C -0.071 4.071 13 C -0.147 4.147 14 Cl -0.070 7.070 15 C -0.062 4.062 16 C -0.161 4.161 17 C -0.191 4.191 18 S 0.277 5.723 19 C -0.011 4.011 20 N -0.328 5.328 21 C 0.090 3.910 22 N -0.354 5.354 23 C 0.236 3.764 24 N -0.356 5.356 25 N -0.327 5.327 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.224 0.776 33 H 0.249 0.751 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.008 0.377 2.526 15.223 hybrid contribution 0.604 1.548 -0.858 1.871 sum 15.612 1.925 1.667 15.818 Atomic orbital electron populations 1.69627 1.05604 1.28935 1.45977 1.24441 0.94972 0.98825 0.95102 0.86312 0.80788 0.81541 0.79299 1.19584 1.20518 1.17867 1.20815 0.76478 0.96858 1.52466 0.87146 1.83585 1.22954 1.25359 1.77763 1.18872 0.90738 0.85862 0.92308 1.21225 1.01555 0.90851 1.09259 1.20765 0.92056 0.97881 0.96358 1.20294 0.92641 0.85313 1.16458 1.98296 1.81104 1.30432 1.97213 1.20420 0.99117 0.89487 0.97171 1.18121 0.90542 0.92710 1.14776 1.22221 1.02948 0.99311 0.94629 1.86392 1.56436 1.15836 1.13680 1.25512 0.91300 0.98008 0.86235 1.69488 1.23722 1.17729 1.21904 1.25102 0.83022 0.84650 0.98259 1.68609 1.30311 1.37098 0.99414 1.19374 0.84812 0.85413 0.86761 1.41686 1.57941 1.29448 1.06546 1.68705 1.18153 1.10320 1.35515 0.90666 0.83696 0.85828 0.85414 0.88100 0.87306 0.77590 0.75098 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 13.96 55.48 0.77 -22.86 16 2 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 3 Si 0.90 20.85 28.62 -169.99 -4.86 15.98 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.12 9.95 30.89 0.31 -9.82 16 8 H 0.11 2.89 5.44 -52.48 -0.29 2.61 16 9 O -0.19 -4.61 7.63 0.03 0.00 -4.61 16 10 C 0.18 3.68 6.62 -39.11 -0.26 3.43 16 11 C -0.21 -4.04 9.17 -39.40 -0.36 -4.40 16 12 C -0.05 -0.84 9.82 -39.57 -0.39 -1.23 16 13 C -0.12 -1.91 6.32 -39.46 -0.25 -2.16 16 14 Cl -0.10 -1.39 28.95 -51.86 -1.50 -2.89 16 15 C -0.04 -0.65 9.48 -39.57 -0.38 -1.02 16 16 C -0.16 -2.79 5.15 -104.44 -0.54 -3.33 16 17 C -0.04 -0.73 4.75 36.01 0.17 -0.55 16 18 S 0.04 0.67 22.25 -107.50 -2.39 -1.73 16 19 C 0.37 6.32 7.90 -89.98 -0.71 5.61 16 20 N -0.60 -9.43 9.31 -14.78 -0.14 -9.57 16 21 C 0.39 5.13 12.40 -91.55 -1.13 4.00 16 22 N -0.62 -8.40 10.53 -15.37 -0.16 -8.56 16 23 C 0.61 8.36 8.76 -322.13 -2.82 5.53 16 24 N -0.81 -7.26 9.05 29.85 0.27 -6.99 16 25 N -0.59 -9.58 10.52 -14.16 -0.15 -9.73 16 26 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.15 2.90 5.64 -52.49 -0.30 2.60 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.10 1.46 8.07 -51.92 -0.42 1.04 16 31 H 0.11 2.03 7.52 -51.92 -0.39 1.64 16 32 H 0.21 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.42 3.05 8.95 -40.82 -0.37 2.68 16 34 H 0.42 2.71 8.95 -40.82 -0.37 2.34 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -29.56 335.02 -12.09 -41.66 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.52 Total: 6.39 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -6.46 Total: -2.15 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.60 Total: -57.71 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.00 Total: -4.61 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.98 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.39 Total: -1.73 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.56 -12.09 -41.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473100887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.490 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds