Wall clock time and date at job start Tue Mar 31 2020 21:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48502 * 109.47227 * 270.00470 * 3 2 1 5 5 H 1.48503 * 109.47014 * 30.00601 * 3 2 1 6 6 H 1.48501 * 109.47012 * 150.00396 * 3 2 1 7 7 C 1.38652 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99862 * 359.97438 * 7 2 1 9 9 O 1.34822 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.35762 * 117.00490 * 185.05948 * 9 7 2 11 11 C 1.38904 * 120.05040 * 354.39878 * 10 9 7 12 12 C 1.38073 * 119.93806 * 179.67315 * 11 10 9 13 13 C 1.38430 * 120.05755 * 0.62650 * 12 11 10 14 14 Cl 1.73602 * 119.94560 * 179.70028 * 13 12 11 15 15 C 1.38386 * 120.11266 * 359.66912 * 13 12 11 16 16 C 1.38121 * 120.05632 * 0.02562 * 15 13 12 17 17 C 1.50701 * 120.02916 * 179.97438 * 16 15 13 18 18 S 1.80997 * 109.46716 * 270.01756 * 17 16 15 19 19 C 1.76210 * 99.99662 * 180.02562 * 18 17 16 20 20 N 1.33189 * 120.04808 * 359.72337 * 19 18 17 21 21 C 1.32112 * 120.07606 * 179.76879 * 20 19 18 22 22 N 1.32184 * 120.18496 * 0.50857 * 21 20 19 23 23 C 1.33112 * 120.10044 * 359.74587 * 22 21 20 24 24 N 1.37997 * 120.04294 * 179.97438 * 23 22 21 25 25 N 1.32854 * 119.91634 * 0.02562 * 23 22 21 26 26 H 0.97001 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.02858 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.96916 * 180.31613 * 12 11 10 29 29 H 1.07998 * 119.97308 * 180.02562 * 15 13 12 30 30 H 1.09000 * 109.47246 * 30.01684 * 17 16 15 31 31 H 1.08998 * 109.46785 * 150.01946 * 17 16 15 32 32 H 1.08007 * 119.90871 * 180.25574 * 21 20 19 33 33 H 0.96995 * 120.00121 * 180.02562 * 24 23 22 34 34 H 0.97006 * 120.00020 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7002 6 1 3.5473 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3570 -1.2009 -0.0011 10 6 3.9733 -2.4058 -0.1082 11 6 3.2229 -3.5746 -0.0939 12 6 3.8515 -4.7985 -0.2098 13 6 5.2294 -4.8619 -0.3273 14 17 6.0173 -6.4027 -0.4651 15 6 5.9797 -3.6992 -0.3357 16 6 5.3552 -2.4721 -0.2263 17 6 6.1730 -1.2063 -0.2349 18 16 6.6419 -0.7795 1.4604 19 6 7.5603 0.6944 1.1619 20 7 7.7153 1.1432 -0.0825 21 6 8.3999 2.2506 -0.3065 22 7 8.9421 2.9121 0.7013 23 6 8.7961 2.4673 1.9474 24 7 9.3631 3.1585 2.9986 25 7 8.1046 1.3566 2.1777 26 1 -0.4850 0.8401 0.0004 27 1 2.1484 -3.5259 0.0030 28 1 3.2681 -5.7074 -0.2039 29 1 7.0545 -3.7513 -0.4278 30 1 7.0714 -1.3582 -0.8331 31 1 5.5836 -0.3959 -0.6638 32 1 8.5203 2.6143 -1.3164 33 1 9.2566 2.8337 3.9063 34 1 9.8682 3.9693 2.8297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473100887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:30 Heat of formation + Delta-G solvation = 42.687934 kcal Electronic energy + Delta-G solvation = -23207.556265 eV Core-core repulsion = 19486.178981 eV Total energy + Delta-G solvation = -3721.377284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48134 -41.17174 -38.65011 -37.10142 -36.87104 -34.88492 -34.53180 -33.87321 -32.74616 -30.79673 -28.40464 -27.24369 -26.51160 -25.34286 -23.45046 -22.62615 -20.26508 -20.07275 -19.90108 -19.00449 -17.55072 -17.07858 -17.06600 -16.86984 -16.78913 -16.33470 -16.01497 -15.73383 -15.51372 -15.21487 -14.99745 -14.58002 -14.25288 -14.19235 -14.09730 -13.90893 -13.27593 -12.90999 -12.88134 -12.70495 -12.39855 -12.20623 -12.12576 -11.88946 -11.72447 -11.34744 -10.91007 -10.88433 -10.64234 -10.07773 -9.87670 -9.08452 -9.03650 -8.54636 -6.24386 -0.37455 -0.24790 0.05866 0.38883 0.44304 1.13451 1.27104 1.28352 1.31571 1.46018 1.96717 2.21396 2.63305 2.69198 2.88301 2.90614 3.03936 3.22491 3.61036 3.85409 3.95285 4.12270 4.24851 4.43183 4.52065 4.77370 4.95238 4.98978 5.15498 5.25407 5.26973 5.39086 5.42440 5.66383 5.68037 6.00639 6.01054 6.43296 6.80419 7.24424 7.49325 8.56161 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.004740 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.301967 B = 5905.584253 C = 8794.922750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.221 6.221 10 C 0.153 3.847 11 C -0.221 4.221 12 C -0.048 4.048 13 C -0.105 4.105 14 Cl -0.069 7.069 15 C -0.036 4.036 16 C -0.147 4.147 17 C -0.035 4.035 18 S 0.019 5.981 19 C 0.361 3.639 20 N -0.615 5.615 21 C 0.388 3.612 22 N -0.621 5.621 23 C 0.592 3.408 24 N -0.782 5.782 25 N -0.613 5.613 26 H 0.285 0.715 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.160 0.840 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.426 0.574 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.547 0.235 1.092 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.127 6.127 10 C 0.100 3.900 11 C -0.241 4.241 12 C -0.067 4.067 13 C -0.132 4.132 14 Cl -0.041 7.041 15 C -0.057 4.057 16 C -0.151 4.151 17 C -0.182 4.182 18 S 0.255 5.745 19 C -0.023 4.023 20 N -0.345 5.345 21 C 0.088 3.912 22 N -0.353 5.353 23 C 0.222 3.778 24 N -0.333 5.333 25 N -0.348 5.348 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.263 0.737 33 H 0.260 0.740 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 18.287 -0.066 2.200 18.419 hybrid contribution -0.041 1.424 -0.738 1.604 sum 18.246 1.358 1.462 18.354 Atomic orbital electron populations 1.69695 1.06618 1.29526 1.49325 1.25019 0.95572 1.01280 0.95569 0.85522 0.79077 0.78856 0.79311 1.18943 1.19710 1.19092 1.20738 0.77752 0.96280 1.52162 0.88931 1.83564 1.21455 1.26738 1.80911 1.19367 0.92048 0.85534 0.93080 1.21238 1.01035 0.91794 1.09990 1.20987 0.92782 0.97678 0.95282 1.20504 0.92549 0.86750 1.13406 1.98320 1.80435 1.28390 1.96938 1.20760 1.00709 0.88445 0.95756 1.18356 0.89471 0.94170 1.13121 1.22142 1.03353 0.97939 0.94794 1.86301 1.57233 1.17186 1.13735 1.25366 0.91740 0.98096 0.87121 1.69509 1.24737 1.18981 1.21284 1.25963 0.81706 0.83699 0.99823 1.68741 1.30317 1.36887 0.99397 1.19776 0.84819 0.85274 0.87882 1.41708 1.56397 1.29111 1.06076 1.68667 1.19102 1.11393 1.35614 0.90508 0.85327 0.83346 0.82202 0.85539 0.89444 0.73684 0.74009 0.73531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.11 13.96 21.61 0.30 -51.81 16 2 C 0.03 1.43 5.49 84.83 0.47 1.89 16 3 Si 0.95 44.46 28.62 68.60 1.96 46.43 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.39 -21.41 9.95 67.92 0.68 -20.73 16 8 H 0.09 5.19 5.44 -2.91 -0.02 5.18 16 9 O -0.22 -10.91 7.63 -22.79 -0.17 -11.09 16 10 C 0.15 6.38 6.62 22.58 0.15 6.53 16 11 C -0.22 -8.62 9.17 22.39 0.21 -8.42 16 12 C -0.05 -1.50 9.82 22.28 0.22 -1.28 16 13 C -0.10 -3.03 6.32 22.35 0.14 -2.89 16 14 Cl -0.07 -1.68 28.95 -2.72 -0.08 -1.76 16 15 C -0.04 -1.04 9.48 22.28 0.21 -0.83 16 16 C -0.15 -5.07 5.15 -19.74 -0.10 -5.17 16 17 C -0.03 -1.12 4.75 71.24 0.34 -0.78 16 18 S 0.02 0.63 22.25 -56.49 -1.26 -0.63 16 19 C 0.36 11.91 7.90 180.12 1.42 13.34 16 20 N -0.62 -18.44 9.31 -200.66 -1.87 -20.31 16 21 C 0.39 9.31 12.40 180.67 2.24 11.55 16 22 N -0.62 -15.38 10.53 -202.55 -2.13 -17.52 16 23 C 0.59 15.25 8.76 261.25 2.29 17.53 16 24 N -0.78 -12.33 9.05 -59.46 -0.54 -12.86 16 25 N -0.61 -19.12 10.52 -198.70 -2.09 -21.21 16 26 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.13 5.43 5.64 -2.91 -0.02 5.42 16 28 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.13 3.38 8.07 -2.40 -0.02 3.36 16 31 H 0.09 3.26 7.52 -2.40 -0.02 3.24 16 32 H 0.25 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.43 5.33 8.95 -92.71 -0.83 4.50 16 34 H 0.43 4.47 8.95 -92.70 -0.83 3.64 16 Total: -1.00 -66.14 335.02 1.93 -64.21 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.45 Total: 15.81 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 8.26 Total: 10.74 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -6.33 Total: -123.71 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.17 Total: -11.09 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.96 Total: 46.43 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.26 Total: -0.63 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -66.14 1.93 -64.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473100887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.901 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds