Wall clock time and date at job start Tue Mar 31 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47343 * 269.99657 * 3 2 1 5 5 H 1.48493 * 109.47224 * 30.00113 * 3 2 1 6 6 H 1.48507 * 109.46971 * 150.00105 * 3 2 1 7 7 C 1.40021 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00390 * 196.39128 * 7 2 1 9 9 C 1.41319 * 119.99930 * 16.38943 * 7 2 1 10 10 C 1.40595 * 119.78425 * 192.49948 * 9 7 2 11 11 C 1.38349 * 119.14564 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68177 * 359.73791 * 11 10 9 13 13 C 1.39762 * 119.48982 * 0.48504 * 12 11 10 14 14 N 1.38825 * 119.58204 * 179.78658 * 13 12 11 15 15 S 1.65600 * 120.00154 * 195.31472 * 14 13 12 16 16 O 1.42101 * 106.39909 * 308.22590 * 15 14 13 17 17 O 1.42102 * 106.40505 * 175.30187 * 15 14 13 18 18 C 1.76201 * 107.21598 * 61.76235 * 15 14 13 19 19 C 1.38174 * 119.96050 * 84.44105 * 18 15 14 20 20 C 1.38730 * 119.99471 * 179.97438 * 19 18 15 21 21 O 1.35892 * 120.04101 * 179.97438 * 20 19 18 22 22 C 1.38708 * 119.91522 * 359.96189 * 20 19 18 23 23 C 1.38340 * 119.91842 * 0.03793 * 22 20 19 24 24 F 1.35109 * 119.99524 * 180.02562 * 23 22 20 25 25 C 1.38208 * 119.95844 * 264.41732 * 18 15 14 26 26 N 1.31971 * 120.83315 * 359.50801 * 13 12 11 27 27 H 0.97001 * 119.99794 * 4.65581 * 1 2 3 28 28 H 1.08001 * 120.42498 * 359.97438 * 10 9 7 29 29 H 1.07997 * 120.65569 * 180.02562 * 11 10 9 30 30 H 1.08004 * 120.25483 * 180.26783 * 12 11 10 31 31 H 0.97010 * 120.00061 * 15.31496 * 14 13 12 32 32 H 1.08000 * 119.99861 * 359.72628 * 19 18 15 33 33 H 0.96703 * 114.00152 * 90.00338 * 21 20 19 34 34 H 1.07999 * 120.04127 * 180.02562 * 22 20 19 35 35 H 1.08001 * 119.95982 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2126 0.0005 8 1 3.0546 -1.2316 0.2645 9 6 1.3439 -2.4118 -0.3443 10 6 1.9622 -3.6492 -0.0929 11 6 1.3009 -4.8149 -0.4363 12 6 0.0440 -4.7215 -1.0136 13 6 -0.5161 -3.4616 -1.2425 14 7 -1.7727 -3.3657 -1.8246 15 16 -2.2892 -1.9204 -2.4464 16 8 -2.1050 -0.9538 -1.4211 17 8 -3.5460 -2.1733 -3.0594 18 6 -1.1807 -1.4855 -3.7451 19 6 -1.3729 -1.9936 -5.0156 20 6 -0.5009 -1.6513 -6.0388 21 8 -0.6888 -2.1509 -7.2884 22 6 0.5629 -0.7982 -5.7846 23 6 0.7520 -0.2915 -4.5113 24 9 1.7874 0.5401 -4.2622 25 6 -0.1202 -0.6361 -3.4919 26 7 0.1323 -2.3621 -0.9072 27 1 -0.4850 0.8373 -0.0682 28 1 2.9411 -3.6892 0.3615 29 1 1.7529 -5.7786 -0.2538 30 1 -0.4968 -5.6153 -1.2876 31 1 -2.3484 -4.1454 -1.8671 32 1 -2.1997 -2.6605 -5.2110 33 1 -1.2514 -1.6015 -7.8512 34 1 1.2427 -0.5300 -6.5797 35 1 0.0283 -0.2401 -2.4982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475726483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:03 Heat of formation + Delta-G solvation = -87.905918 kcal Electronic energy + Delta-G solvation = -27832.286822 eV Core-core repulsion = 23644.617437 eV Total energy + Delta-G solvation = -4187.669384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.69960 -39.58752 -38.56371 -36.66051 -36.56875 -35.16748 -34.72882 -33.23978 -30.97025 -30.57765 -29.68091 -28.90414 -25.60268 -23.49811 -22.69235 -21.92470 -21.46985 -19.50746 -18.43752 -17.99553 -17.12283 -16.78840 -16.60960 -16.24826 -16.06641 -15.55928 -15.42407 -14.89900 -14.64257 -14.61477 -14.33396 -13.97537 -13.58597 -13.09762 -12.88294 -12.42870 -12.24462 -12.14210 -12.03819 -11.63407 -11.49500 -11.32263 -11.19172 -11.10636 -11.06948 -10.76461 -10.63668 -10.52372 -10.27075 -10.09597 -9.27973 -9.15889 -8.59442 -8.28554 -7.79967 -7.32013 -6.56591 -4.54178 0.61953 0.98434 1.12995 2.70285 2.89159 3.11390 3.12668 3.14829 3.19940 3.53281 3.87505 3.96155 4.18980 4.36203 4.61939 4.84611 4.93850 5.15063 5.33718 5.46371 5.48008 5.75969 5.83093 6.00688 6.04545 6.07683 6.30019 6.40132 6.68003 6.69836 6.78224 6.94068 7.17664 7.41877 7.45541 7.49851 7.65120 7.99182 8.17815 8.60461 8.82209 9.80320 10.25021 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.006947 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.164933 B = 4029.819200 C = 5098.321967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.675 5.675 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.087 0.913 9 C 0.292 3.708 10 C -0.294 4.294 11 C -0.033 4.033 12 C -0.338 4.338 13 C 0.383 3.617 14 N -1.032 6.032 15 S 2.685 3.315 16 O -0.878 6.878 17 O -0.979 6.979 18 C -0.624 4.624 19 C -0.062 4.062 20 C 0.101 3.899 21 O -0.491 6.491 22 C -0.134 4.134 23 C 0.090 3.910 24 F -0.130 7.130 25 C -0.029 4.029 26 N -0.527 5.527 27 H 0.287 0.713 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.421 0.579 32 H 0.145 0.855 33 H 0.391 0.609 34 H 0.143 0.857 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -0.763 -9.506 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.105 0.895 9 C 0.168 3.832 10 C -0.317 4.317 11 C -0.057 4.057 12 C -0.366 4.366 13 C 0.144 3.856 14 N -0.782 5.782 15 S 2.772 3.228 16 O -0.868 6.868 17 O -0.969 6.969 18 C -0.708 4.708 19 C -0.082 4.082 20 C 0.055 3.945 21 O -0.301 6.301 22 C -0.154 4.154 23 C 0.070 3.930 24 F -0.108 7.108 25 C -0.048 4.048 26 N -0.248 5.248 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.256 0.744 32 H 0.163 0.837 33 H 0.246 0.754 34 H 0.161 0.839 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.378 0.443 -9.108 9.724 hybrid contribution 1.096 -0.213 -0.645 1.289 sum -2.282 0.230 -9.752 10.018 Atomic orbital electron populations 1.69963 1.06156 1.29716 1.23569 1.26034 0.94901 1.00651 0.94411 0.86689 0.80948 0.81928 0.79824 1.18834 1.20062 1.18486 1.19543 0.97164 0.90329 1.38784 0.89512 1.18011 0.85931 0.91982 0.87286 1.21640 1.02763 0.93253 1.14067 1.20674 0.93503 0.96908 0.94661 1.20591 1.00003 0.94972 1.21040 1.17981 0.84447 0.91665 0.91484 1.53093 1.24482 1.30409 1.70247 1.02579 0.72387 0.73871 0.73936 1.93778 1.83995 1.57183 1.51803 1.93561 1.39067 1.85623 1.78686 1.30987 1.16075 1.09393 1.14342 1.21173 0.98018 0.97536 0.91457 1.18012 0.94780 0.96006 0.85654 1.84860 1.72931 1.50604 1.21728 1.21574 0.99674 0.97450 0.96668 1.17573 0.87703 0.93936 0.93765 1.91551 1.55559 1.68890 1.94818 1.21514 0.89827 0.92585 1.00891 1.67857 1.11194 1.25242 1.20532 0.90146 0.88049 0.88273 0.88517 0.74389 0.83687 0.75360 0.83872 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.84 9.21 55.55 0.51 -16.33 16 2 C 0.07 1.66 5.14 -17.35 -0.09 1.57 16 3 Si 0.88 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.43 -10.67 9.10 -37.74 -0.34 -11.01 16 8 H 0.09 2.05 7.90 -52.48 -0.41 1.64 16 9 C 0.29 7.39 6.45 -84.99 -0.55 6.84 16 10 C -0.29 -6.79 9.83 -38.65 -0.38 -7.17 16 11 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 12 C -0.34 -7.05 9.97 -38.87 -0.39 -7.44 16 13 C 0.38 8.44 7.27 -155.32 -1.13 7.31 16 14 N -1.03 -18.98 5.82 31.14 0.18 -18.79 16 15 S 2.69 50.60 5.41 -107.50 -0.58 50.02 16 16 O -0.88 -19.53 14.16 -57.17 -0.81 -20.34 16 17 O -0.98 -18.31 17.43 -57.17 -1.00 -19.30 16 18 C -0.62 -11.26 5.82 -39.62 -0.23 -11.49 16 19 C -0.06 -0.96 9.46 -39.42 -0.37 -1.33 16 20 C 0.10 1.43 6.70 -39.23 -0.26 1.17 16 21 O -0.49 -5.62 13.50 -19.40 -0.26 -5.88 16 22 C -0.13 -1.97 9.97 -39.37 -0.39 -2.37 16 23 C 0.09 1.61 7.30 -39.44 -0.29 1.32 16 24 F -0.13 -2.41 17.27 2.25 0.04 -2.37 16 25 C -0.03 -0.56 8.90 -39.49 -0.35 -0.91 16 26 N -0.53 -12.95 5.51 -10.33 -0.06 -13.01 16 27 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.42 6.20 8.85 -34.47 -0.31 5.89 16 32 H 0.15 1.95 7.75 -52.49 -0.41 1.54 16 33 H 0.39 2.35 9.06 45.56 0.41 2.77 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.18 3.97 5.93 -52.49 -0.31 3.66 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -30.99 325.29 -9.13 -40.12 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -1.85 Total: 12.65 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -5.18 Total: -24.60 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.64 Total: -48.13 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -2.07 Total: -45.53 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.58 Total: 50.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.99 -9.13 -40.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475726483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.787 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds