Wall clock time and date at job start Tue Mar 31 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48504 * 109.47343 * 269.99657 * 3 2 1 5 5 H 1.48493 * 109.47224 * 30.00113 * 3 2 1 6 6 H 1.48507 * 109.46971 * 150.00105 * 3 2 1 7 7 C 1.40021 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00390 * 196.39128 * 7 2 1 9 9 C 1.41319 * 119.99930 * 16.38943 * 7 2 1 10 10 C 1.40595 * 119.78425 * 192.49948 * 9 7 2 11 11 C 1.38349 * 119.14564 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68177 * 359.73791 * 11 10 9 13 13 C 1.39762 * 119.48982 * 0.48504 * 12 11 10 14 14 N 1.38825 * 119.58204 * 179.78658 * 13 12 11 15 15 S 1.65600 * 120.00154 * 195.31472 * 14 13 12 16 16 O 1.42101 * 106.39909 * 308.22590 * 15 14 13 17 17 O 1.42102 * 106.40505 * 175.30187 * 15 14 13 18 18 C 1.76201 * 107.21598 * 61.76235 * 15 14 13 19 19 C 1.38174 * 119.96050 * 84.44105 * 18 15 14 20 20 C 1.38730 * 119.99471 * 179.97438 * 19 18 15 21 21 O 1.35892 * 120.04101 * 179.97438 * 20 19 18 22 22 C 1.38708 * 119.91522 * 359.96189 * 20 19 18 23 23 C 1.38340 * 119.91842 * 0.03793 * 22 20 19 24 24 F 1.35109 * 119.99524 * 180.02562 * 23 22 20 25 25 C 1.38208 * 119.95844 * 264.41732 * 18 15 14 26 26 N 1.31971 * 120.83315 * 359.50801 * 13 12 11 27 27 H 0.97001 * 119.99794 * 4.65581 * 1 2 3 28 28 H 1.08001 * 120.42498 * 359.97438 * 10 9 7 29 29 H 1.07997 * 120.65569 * 180.02562 * 11 10 9 30 30 H 1.08004 * 120.25483 * 180.26783 * 12 11 10 31 31 H 0.97010 * 120.00061 * 15.31496 * 14 13 12 32 32 H 1.08000 * 119.99861 * 359.72628 * 19 18 15 33 33 H 0.96703 * 114.00152 * 90.00338 * 21 20 19 34 34 H 1.07999 * 120.04127 * 180.02562 * 22 20 19 35 35 H 1.08001 * 119.95982 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2126 0.0005 8 1 3.0546 -1.2316 0.2645 9 6 1.3439 -2.4118 -0.3443 10 6 1.9622 -3.6492 -0.0929 11 6 1.3009 -4.8149 -0.4363 12 6 0.0440 -4.7215 -1.0136 13 6 -0.5161 -3.4616 -1.2425 14 7 -1.7727 -3.3657 -1.8246 15 16 -2.2892 -1.9204 -2.4464 16 8 -2.1050 -0.9538 -1.4211 17 8 -3.5460 -2.1733 -3.0594 18 6 -1.1807 -1.4855 -3.7451 19 6 -1.3729 -1.9936 -5.0156 20 6 -0.5009 -1.6513 -6.0388 21 8 -0.6888 -2.1509 -7.2884 22 6 0.5629 -0.7982 -5.7846 23 6 0.7520 -0.2915 -4.5113 24 9 1.7874 0.5401 -4.2622 25 6 -0.1202 -0.6361 -3.4919 26 7 0.1323 -2.3621 -0.9072 27 1 -0.4850 0.8373 -0.0682 28 1 2.9411 -3.6892 0.3615 29 1 1.7529 -5.7786 -0.2538 30 1 -0.4968 -5.6153 -1.2876 31 1 -2.3484 -4.1454 -1.8671 32 1 -2.1997 -2.6605 -5.2110 33 1 -1.2514 -1.6015 -7.8512 34 1 1.2427 -0.5300 -6.5797 35 1 0.0283 -0.2401 -2.4982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475726483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:03 Heat of formation + Delta-G solvation = -109.810226 kcal Electronic energy + Delta-G solvation = -27833.236664 eV Core-core repulsion = 23644.617437 eV Total energy + Delta-G solvation = -4188.619226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.08168 -40.75340 -40.26667 -38.15083 -37.70340 -36.74432 -36.38330 -34.95881 -32.34110 -32.20191 -30.93492 -30.61729 -27.36626 -24.78543 -23.93673 -23.62139 -23.18174 -20.82429 -19.85624 -19.69149 -18.46268 -18.13457 -18.07913 -17.74002 -17.34097 -16.95321 -16.79350 -16.57502 -16.29795 -15.92984 -15.79225 -15.58379 -14.83804 -14.77015 -14.57096 -13.92990 -13.63090 -13.50399 -13.40365 -13.20105 -13.11398 -12.88255 -12.77740 -12.66933 -12.51474 -12.37384 -12.29961 -12.08880 -11.80673 -11.60092 -10.91702 -10.51977 -10.03684 -9.85830 -9.52741 -9.04531 -8.33465 -6.37383 -0.74026 -0.41279 -0.12756 0.96825 1.19091 1.42275 1.51411 1.53917 1.80696 2.13930 2.26152 2.67705 2.81320 2.86520 3.08414 3.70736 3.74625 3.78069 3.84134 3.98904 4.02651 4.21817 4.45611 4.64693 4.74640 4.81747 4.87026 4.95507 4.97431 5.03970 5.23852 5.47026 5.51538 5.72623 5.90245 5.96081 6.30460 6.36270 6.68848 6.82661 7.01628 8.05111 8.48049 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.006947 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.164933 B = 4029.819200 C = 5098.321967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.462 4.462 8 H 0.086 0.914 9 C 0.265 3.735 10 C -0.318 4.318 11 C -0.031 4.031 12 C -0.333 4.333 13 C 0.367 3.633 14 N -1.023 6.023 15 S 2.699 3.301 16 O -0.918 6.918 17 O -0.979 6.979 18 C -0.630 4.630 19 C -0.063 4.063 20 C 0.122 3.878 21 O -0.488 6.488 22 C -0.120 4.120 23 C 0.072 3.928 24 F -0.141 7.141 25 C -0.058 4.058 26 N -0.543 5.543 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.437 0.563 32 H 0.168 0.832 33 H 0.419 0.581 34 H 0.176 0.824 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 -2.203 -11.799 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.187 4.187 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.140 3.860 10 C -0.341 4.341 11 C -0.056 4.056 12 C -0.360 4.360 13 C 0.128 3.872 14 N -0.775 5.775 15 S 2.789 3.211 16 O -0.908 6.908 17 O -0.969 6.969 18 C -0.717 4.717 19 C -0.082 4.082 20 C 0.076 3.924 21 O -0.302 6.302 22 C -0.140 4.140 23 C 0.052 3.948 24 F -0.120 7.120 25 C -0.079 4.079 26 N -0.264 5.264 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.275 0.725 32 H 0.186 0.814 33 H 0.280 0.720 34 H 0.193 0.807 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.623 -1.023 -11.401 12.006 hybrid contribution 1.080 0.059 -0.101 1.087 sum -2.542 -0.963 -11.502 11.819 Atomic orbital electron populations 1.70041 1.07271 1.30118 1.24758 1.26591 0.95434 1.02986 0.93721 0.85808 0.80015 0.78482 0.79453 1.19216 1.19547 1.17745 1.19747 0.97407 0.91346 1.40746 0.89562 1.18396 0.86729 0.93033 0.87864 1.21824 1.03510 0.93538 1.15211 1.21095 0.93397 0.97760 0.93313 1.21052 0.99992 0.95686 1.19285 1.18327 0.85378 0.91866 0.91641 1.52907 1.23585 1.31108 1.69907 1.01903 0.72275 0.73303 0.73663 1.93740 1.84670 1.58533 1.53813 1.93550 1.39209 1.85585 1.78567 1.30662 1.15734 1.10188 1.15075 1.21487 0.98821 0.97308 0.90619 1.17934 0.93569 0.94291 0.86564 1.84809 1.73699 1.51144 1.20531 1.21854 0.99997 0.96258 0.95861 1.17742 0.87536 0.94724 0.94766 1.91513 1.56009 1.69394 1.95043 1.21315 0.91705 0.94455 1.00377 1.67842 1.11234 1.26673 1.20682 0.90391 0.87408 0.84595 0.85051 0.72462 0.81413 0.71993 0.80705 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -36.79 9.21 21.84 0.20 -36.59 16 2 C 0.04 1.97 5.14 85.29 0.44 2.41 16 3 Si 0.94 38.41 29.59 68.60 2.03 40.44 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.46 -24.03 9.10 23.46 0.21 -23.82 16 8 H 0.09 4.28 7.90 -2.91 -0.02 4.26 16 9 C 0.26 13.78 6.45 40.19 0.26 14.04 16 10 C -0.32 -14.73 9.83 22.87 0.22 -14.51 16 11 C -0.03 -1.26 10.15 22.39 0.23 -1.03 16 12 C -0.33 -13.15 9.97 22.73 0.23 -12.92 16 13 C 0.37 16.00 7.27 133.40 0.97 16.97 16 14 N -1.02 -36.78 5.82 -55.38 -0.32 -37.10 16 15 S 2.70 101.91 5.41 -56.49 -0.31 101.60 16 16 O -0.92 -42.48 14.16 -128.00 -1.81 -44.30 16 17 O -0.98 -35.57 17.43 -128.00 -2.23 -37.80 16 18 C -0.63 -22.54 5.82 22.25 0.13 -22.41 16 19 C -0.06 -1.79 9.46 22.37 0.21 -1.57 16 20 C 0.12 3.05 6.70 22.50 0.15 3.20 16 21 O -0.49 -8.83 13.50 -92.34 -1.25 -10.08 16 22 C -0.12 -3.24 9.97 22.41 0.22 -3.02 16 23 C 0.07 2.57 7.30 22.36 0.16 2.73 16 24 F -0.14 -5.32 17.27 44.97 0.78 -4.54 16 25 C -0.06 -2.35 8.90 22.33 0.20 -2.15 16 26 N -0.54 -27.31 5.51 -186.58 -1.03 -28.34 16 27 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 28 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.44 12.09 8.85 -96.73 -0.86 11.23 16 32 H 0.17 3.94 7.75 -2.91 -0.02 3.91 16 33 H 0.42 2.87 9.06 -74.06 -0.67 2.19 16 34 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.15 6.98 5.93 -2.91 -0.02 6.97 16 Total: -1.00 -68.93 325.29 -0.63 -69.56 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.33 Total: 29.23 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 3.64 Total: -42.09 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -1.15 Total: -102.04 kcal Atomic # 8 Polarization: -86.88 SS G_CDS: -5.29 Total: -92.18 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: 101.91 SS G_CDS: -0.31 Total: 101.60 kcal Total: -68.93 -0.63 -69.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475726483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.249 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds