Wall clock time and date at job start Tue Mar 31 2020 20:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47190 * 119.99720 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21657 * 119.99893 * 359.97438 * 16 15 14 18 18 C 1.47033 * 119.99600 * 179.97438 * 16 15 14 19 19 C 1.44558 * 123.49412 * 0.02562 * 18 16 15 20 20 C 1.32804 * 113.06887 * 179.97438 * 19 18 16 21 21 Cl 1.73595 * 124.69253 * 180.02562 * 20 19 18 22 22 S 1.75494 * 110.61363 * 0.02562 * 20 19 18 23 23 C 1.36184 * 123.48750 * 179.70426 * 18 16 15 24 24 Cl 1.73601 * 124.58830 * 359.97438 * 23 18 16 25 25 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 29 29 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 30 30 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 31 31 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 32 32 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 33 33 H 1.07999 * 123.46292 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5115 -8.7422 0.3210 18 6 0.3629 -9.6400 0.2297 19 6 -1.0683 -9.4659 0.1241 20 6 -1.7351 -10.6142 0.1452 21 17 -3.4619 -10.7561 0.0373 22 16 -0.6291 -11.9683 0.2972 23 6 0.7349 -10.9467 0.3234 24 17 2.3761 -11.4971 0.4550 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8895 29 1 0.8668 -4.9036 -2.0127 30 1 2.5084 -6.2483 -0.7151 31 1 2.3911 -6.1471 1.0580 32 1 -0.0787 -7.0795 0.0541 33 1 -1.5460 -8.5013 0.0371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482737835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:43 Heat of formation + Delta-G solvation = -50.913905 kcal Electronic energy + Delta-G solvation = -21215.834279 eV Core-core repulsion = 17455.672515 eV Total energy + Delta-G solvation = -3760.161765 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.19731 -38.12441 -37.57017 -37.24130 -36.53151 -34.45062 -34.02465 -31.35129 -29.98871 -29.22142 -26.26568 -24.47220 -22.64218 -21.94534 -21.41959 -19.83099 -19.16491 -17.52174 -17.18071 -16.19968 -16.09483 -15.94808 -15.18684 -15.03631 -14.70184 -14.49289 -14.16879 -13.92816 -13.86567 -13.50547 -13.02820 -12.97924 -12.65293 -12.34235 -12.20496 -11.88794 -11.45514 -11.43124 -11.33044 -10.98192 -10.81515 -10.65986 -10.23071 -10.11394 -9.82948 -9.54356 -9.29362 -9.28744 -9.00135 -8.91408 -6.96142 -5.77807 -3.07634 -0.05311 0.12937 0.96034 1.26475 1.40787 1.75180 3.02397 3.05095 3.43329 3.47627 3.48782 4.34801 4.41411 4.52619 4.67610 4.79394 4.95373 5.07044 5.20456 5.32931 5.53883 5.58913 5.76165 5.91559 6.15874 6.29761 6.48600 6.64259 7.33400 7.66466 7.88769 8.03178 8.40313 9.51922 10.08088 10.43691 11.44488 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002230 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.474048 B =12550.801287 C =13947.544556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.088 3.912 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.711 5.711 16 C 0.573 3.427 17 O -0.521 6.521 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.165 4.165 21 Cl 0.002 6.998 22 S 0.277 5.723 23 C -0.123 4.123 24 Cl 0.032 6.968 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.374 0.626 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.405 0.595 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 -28.950 0.164 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.363 5.363 16 C 0.357 3.643 17 O -0.398 6.398 18 C -0.160 4.160 19 C -0.114 4.114 20 C -0.309 4.309 21 Cl 0.031 6.969 22 S 0.539 5.461 23 C -0.270 4.270 24 Cl 0.061 6.939 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.221 0.779 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.240 0.760 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.898 -30.500 0.724 30.756 hybrid contribution 0.389 2.522 -0.445 2.590 sum -3.509 -27.978 0.279 28.198 Atomic orbital electron populations 1.69662 1.05115 1.25834 1.57230 1.24762 0.95535 0.97738 1.02778 0.86251 0.78514 0.83432 0.77868 1.21236 1.21640 1.21223 1.19172 0.90973 0.84097 1.43353 0.91251 1.42226 1.06061 0.99389 1.89395 1.21194 0.93481 0.86539 0.98911 1.22414 0.94634 0.91787 0.88306 0.87661 1.86574 1.37551 1.96233 1.15427 1.22148 0.92112 0.85603 1.03477 1.45745 1.11355 1.05163 1.74062 1.17271 0.87389 0.82182 0.77479 1.90873 1.15466 1.84422 1.49066 1.20123 0.93163 0.92988 1.09718 1.21246 0.90903 0.99226 1.00017 1.25064 0.91393 0.98704 1.15735 1.98409 1.04143 1.97660 1.96729 1.83366 0.89348 1.04326 1.69032 1.25343 0.94959 0.97835 1.08892 1.98438 1.11905 1.87997 1.95521 0.93400 0.77720 0.95335 0.95869 0.77921 0.90764 0.90117 0.75967 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.14 5.55 -59.91 -0.33 -18.47 16 10 C 0.13 2.41 5.90 -4.04 -0.02 2.38 16 11 C 0.09 1.30 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 O -0.55 -8.29 13.03 -35.23 -0.46 -8.75 16 14 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 15 N -0.71 -8.00 5.43 -61.51 -0.33 -8.33 16 16 C 0.57 7.18 7.79 -12.69 -0.10 7.08 16 17 O -0.52 -8.07 14.91 5.23 0.08 -8.00 16 18 C -0.14 -1.45 5.98 -104.58 -0.63 -2.08 16 19 C -0.08 -0.68 9.84 -38.96 -0.38 -1.06 16 20 C -0.17 -1.25 7.00 28.87 0.20 -1.05 16 21 Cl 0.00 0.01 29.27 -51.86 -1.52 -1.50 16 22 S 0.28 1.92 23.02 -107.50 -2.47 -0.56 16 23 C -0.12 -1.19 6.87 29.99 0.21 -0.99 16 24 Cl 0.03 0.34 27.19 -51.86 -1.41 -1.07 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.39 10.37 7.67 -40.82 -0.31 10.06 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.37 4.64 9.05 45.56 0.41 5.06 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.40 3.89 6.89 -40.82 -0.28 3.61 16 33 H 0.17 1.10 7.10 -52.49 -0.37 0.72 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -32.87 337.16 -8.96 -41.82 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.21 Total: 10.71 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.07 Total: -0.81 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.06 Total: -54.27 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.38 Total: -16.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.47 Total: -0.56 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -2.93 Total: -2.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.87 -8.96 -41.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482737835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.092 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds