Wall clock time and date at job start Tue Mar 31 2020 20:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47190 * 119.99720 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21657 * 119.99893 * 359.97438 * 16 15 14 18 18 C 1.47033 * 119.99600 * 179.97438 * 16 15 14 19 19 C 1.44558 * 123.49412 * 0.02562 * 18 16 15 20 20 C 1.32804 * 113.06887 * 179.97438 * 19 18 16 21 21 Cl 1.73595 * 124.69253 * 180.02562 * 20 19 18 22 22 S 1.75494 * 110.61363 * 0.02562 * 20 19 18 23 23 C 1.36184 * 123.48750 * 179.70426 * 18 16 15 24 24 Cl 1.73601 * 124.58830 * 359.97438 * 23 18 16 25 25 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 29 29 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 30 30 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 31 31 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 32 32 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 33 33 H 1.07999 * 123.46292 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5115 -8.7422 0.3210 18 6 0.3629 -9.6400 0.2297 19 6 -1.0683 -9.4659 0.1241 20 6 -1.7351 -10.6142 0.1452 21 17 -3.4619 -10.7561 0.0373 22 16 -0.6291 -11.9683 0.2972 23 6 0.7349 -10.9467 0.3234 24 17 2.3761 -11.4971 0.4550 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8895 29 1 0.8668 -4.9036 -2.0127 30 1 2.5084 -6.2483 -0.7151 31 1 2.3911 -6.1471 1.0580 32 1 -0.0787 -7.0795 0.0541 33 1 -1.5460 -8.5013 0.0371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482737835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:41 Heat of formation + Delta-G solvation = -75.928580 kcal Electronic energy + Delta-G solvation = -21216.918997 eV Core-core repulsion = 17455.672515 eV Total energy + Delta-G solvation = -3761.246482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.12619 -39.14830 -38.44553 -38.00763 -37.23222 -36.08335 -35.29561 -33.19604 -30.94020 -30.39038 -27.61792 -25.77388 -24.13822 -22.82372 -22.72124 -20.70521 -19.88787 -19.20439 -18.39129 -17.31164 -17.21795 -16.94413 -16.43203 -16.13390 -15.79419 -15.60087 -15.34178 -15.02603 -14.94580 -14.63714 -14.42098 -14.13224 -13.82075 -13.61055 -13.21350 -12.95493 -12.84186 -12.71364 -12.24866 -12.19838 -12.11430 -11.96823 -11.91314 -11.79725 -11.16558 -10.96692 -10.84105 -10.23166 -9.91909 -9.69980 -9.00470 -7.94325 -5.23675 -0.76340 -0.49999 0.31854 0.55558 0.75247 1.08259 1.48217 1.51104 1.57287 2.10082 2.12340 2.56986 3.36891 3.48375 3.57465 3.62774 3.73768 4.02446 4.18208 4.22363 4.39383 4.46093 4.63660 4.69666 4.75430 4.95376 5.22300 5.29961 5.48730 6.26886 6.42803 6.80735 7.09914 7.34109 8.09577 8.32484 9.28695 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.002230 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.474048 B =12550.801287 C =13947.544556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.108 3.892 12 H 0.101 0.899 13 O -0.562 6.562 14 C 0.104 3.896 15 N -0.703 5.703 16 C 0.571 3.429 17 O -0.556 6.556 18 C -0.156 4.156 19 C -0.083 4.083 20 C -0.171 4.171 21 Cl 0.010 6.990 22 S 0.338 5.662 23 C -0.140 4.140 24 Cl 0.019 6.981 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.385 0.615 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.414 0.586 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -30.014 0.032 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.119 0.881 13 O -0.369 6.369 14 C -0.021 4.021 15 N -0.355 5.355 16 C 0.357 3.643 17 O -0.436 6.436 18 C -0.176 4.176 19 C -0.113 4.113 20 C -0.315 4.315 21 Cl 0.038 6.962 22 S 0.601 5.399 23 C -0.287 4.287 24 Cl 0.048 6.952 25 H 0.060 0.940 26 H 0.209 0.791 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.234 0.766 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.251 0.749 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.056 -31.604 0.583 31.868 hybrid contribution 0.415 2.719 -0.416 2.782 sum -3.640 -28.885 0.167 29.114 Atomic orbital electron populations 1.69819 1.06622 1.26182 1.59176 1.25589 0.96401 1.01169 1.03581 0.85208 0.77193 0.79109 0.78211 1.20373 1.22160 1.20352 1.19604 0.91505 0.85364 1.41632 0.90614 1.42414 1.05753 1.00765 1.89391 1.21408 0.94240 0.85700 0.99154 1.22094 0.93532 0.91256 0.88282 0.88072 1.86554 1.38132 1.96204 1.15992 1.21884 0.91880 0.84783 1.03534 1.45619 1.11637 1.04624 1.73591 1.17568 0.87326 0.82728 0.76664 1.90852 1.16972 1.84933 1.50820 1.20008 0.93715 0.92417 1.11434 1.21283 0.89854 1.00172 1.00041 1.25198 0.91943 0.99089 1.15250 1.98418 1.03467 1.97631 1.96662 1.83202 0.87103 1.02519 1.67039 1.25646 0.95299 0.98651 1.09128 1.98431 1.13145 1.88053 1.95615 0.93972 0.79097 0.94848 0.95080 0.76568 0.90499 0.90298 0.74884 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 67. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.27 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.82 9.99 84.04 0.84 -12.98 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.87 5.55 -343.45 -1.91 -38.77 16 10 C 0.12 4.51 5.90 86.38 0.51 5.02 16 11 C 0.11 3.06 3.09 30.60 0.09 3.16 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 O -0.56 -16.16 13.03 -148.98 -1.94 -18.11 16 14 C 0.10 2.47 5.34 86.38 0.46 2.93 16 15 N -0.70 -14.95 5.43 -466.74 -2.53 -17.49 16 16 C 0.57 13.88 7.79 86.55 0.67 14.55 16 17 O -0.56 -17.08 14.91 -4.21 -0.06 -17.14 16 18 C -0.16 -3.04 5.98 -19.84 -0.12 -3.16 16 19 C -0.08 -1.21 9.84 22.70 0.22 -0.99 16 20 C -0.17 -2.24 7.00 66.64 0.47 -1.77 16 21 Cl 0.01 0.12 29.27 -2.72 -0.08 0.04 16 22 S 0.34 4.00 23.02 -56.49 -1.30 2.70 16 23 C -0.14 -2.55 6.87 67.34 0.46 -2.09 16 24 Cl 0.02 0.39 27.19 -2.72 -0.07 0.31 16 25 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.38 20.28 7.67 -92.71 -0.71 19.57 16 27 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.39 9.02 9.05 -74.06 -0.67 8.35 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 7.32 6.89 -92.71 -0.64 6.68 16 33 H 0.18 2.01 7.10 -2.91 -0.02 1.99 16 Total: -1.00 -69.66 337.16 -2.32 -71.97 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.81 Total: 26.68 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.08 Total: 0.84 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.16 Total: -115.24 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -2.00 Total: -35.25 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.30 Total: 2.70 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.15 Total: 0.35 kcal Total: -69.66 -2.32 -71.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482737835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.956 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds