Wall clock time and date at job start Tue Mar 31 2020 21:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08997 * 110.27541 * 32.90484 * 14 13 11 16 16 C 1.54599 * 110.30604 * 270.71466 * 14 13 11 17 17 C 1.54944 * 102.91756 * 219.12712 * 16 14 13 18 18 N 1.48527 * 103.23085 * 37.41118 * 17 16 14 19 19 C 1.46897 * 111.00393 * 200.27940 * 18 17 16 20 20 C 1.50697 * 109.46987 * 287.40031 * 19 18 17 21 21 C 1.31331 * 120.00234 * 125.00103 * 20 19 18 22 22 Cl 1.73599 * 120.00024 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.00159 * 179.97438 * 21 20 19 24 24 C 1.47904 * 105.81910 * 320.79699 * 18 17 16 25 25 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 29 29 H 1.09001 * 110.72240 * 337.47998 * 16 14 13 30 30 H 1.09001 * 110.72615 * 100.77285 * 16 14 13 31 31 H 1.09005 * 110.66435 * 278.97656 * 17 16 14 32 32 H 1.09003 * 110.80895 * 155.92032 * 17 16 14 33 33 H 1.09002 * 109.47040 * 47.39707 * 19 18 17 34 34 H 1.08999 * 109.47395 * 167.40093 * 19 18 17 35 35 H 1.08000 * 119.99986 * 304.99201 * 20 19 18 36 36 H 1.08999 * 109.91396 * 265.97049 * 24 18 17 37 37 H 1.09003 * 110.07916 * 144.77276 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.3942 -7.7673 -0.5608 16 6 2.1249 -8.2125 1.4442 17 6 2.5909 -9.6885 1.3731 18 7 3.7470 -9.6355 0.4422 19 6 4.0265 -10.9610 -0.1261 20 6 4.6402 -11.8418 0.9315 21 6 4.0962 -13.0027 1.2160 22 17 2.6697 -13.5225 0.3742 23 17 4.8035 -14.0177 2.4340 24 6 3.3688 -8.6740 -0.6161 25 1 -0.4850 0.8401 0.0004 26 1 3.1238 -3.7309 -0.8925 27 1 3.1252 -3.7317 0.8875 28 1 3.8009 -6.1834 -0.0040 29 1 2.7451 -7.6452 2.1382 30 1 1.0740 -8.1530 1.7271 31 1 1.8010 -10.3223 0.9699 32 1 2.9035 -10.0436 2.3551 33 1 3.0971 -11.4089 -0.4776 34 1 4.7195 -10.8594 -0.9613 35 1 5.5275 -11.5183 1.4555 36 1 2.9316 -9.2053 -1.4614 37 1 4.2448 -8.1136 -0.9429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490522149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:26 Heat of formation + Delta-G solvation = -25.911668 kcal Electronic energy + Delta-G solvation = -21265.689069 eV Core-core repulsion = 17642.444577 eV Total energy + Delta-G solvation = -3623.244492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03445 -38.62496 -37.77322 -37.02625 -35.09254 -33.29972 -32.43262 -30.79247 -29.57428 -27.90787 -25.65274 -25.39125 -21.74687 -21.26068 -20.72344 -20.35500 -17.89442 -17.39537 -16.73024 -16.29396 -15.91995 -15.72831 -14.89986 -14.81568 -14.78969 -14.23249 -13.99385 -13.73195 -13.30144 -13.15362 -12.83585 -12.55910 -12.36556 -12.25752 -12.08820 -11.95852 -11.75022 -11.62819 -11.58301 -11.41053 -11.07072 -11.03046 -11.00292 -10.76234 -9.82021 -9.55479 -9.41397 -9.07673 -8.97870 -8.82797 -8.24220 -6.50484 -6.22104 -3.92646 0.83850 0.97892 1.90981 3.01232 3.06376 3.22110 3.27572 3.31521 3.55216 3.71611 4.20045 4.26050 4.34337 4.62408 4.67612 4.90564 4.95296 5.01920 5.12286 5.13152 5.16972 5.25682 5.34190 5.43730 5.51893 5.60128 5.67570 5.87161 5.89315 5.99628 6.13915 6.40277 6.50044 6.64940 7.59254 7.69881 8.34849 8.59808 9.23322 10.85290 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.039408 B = 0.001707 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.346277 B =16395.322798 C =16647.436720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.730 5.730 14 C 0.139 3.861 15 H 0.096 0.904 16 C -0.134 4.134 17 C 0.034 3.966 18 N -0.510 5.510 19 C 0.064 3.936 20 C -0.094 4.094 21 C -0.049 4.049 22 Cl -0.040 7.040 23 Cl -0.039 7.039 24 C 0.031 3.969 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.400 0.600 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.057 0.943 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.547 -28.222 1.185 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.384 5.384 14 C 0.032 3.968 15 H 0.114 0.886 16 C -0.174 4.174 17 C -0.093 4.093 18 N -0.234 5.234 19 C -0.064 4.064 20 C -0.115 4.115 21 C -0.103 4.103 22 Cl -0.012 7.012 23 Cl -0.011 7.011 24 C -0.098 4.098 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.169 0.831 36 H 0.076 0.924 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.782 -28.412 1.470 30.085 hybrid contribution 1.744 0.841 -0.340 1.965 sum 11.526 -27.572 1.130 29.905 Atomic orbital electron populations 1.70018 1.05950 1.27448 1.46872 1.24992 0.95032 0.99037 0.94545 0.86168 0.79420 0.81567 0.78341 1.20282 1.20756 1.19687 1.22868 0.94915 0.91653 1.58931 0.90915 1.85391 1.04948 0.96344 1.96721 1.23533 1.06566 0.95351 1.04957 1.20336 0.86552 0.86319 0.74850 1.90697 1.15394 1.85579 1.47501 1.46087 1.09933 1.04788 1.77633 1.21671 0.97315 0.81452 0.96315 0.88573 1.22961 1.02476 0.94647 0.97270 1.23307 0.91310 0.97177 0.97536 1.64723 1.37754 1.06201 1.14745 1.21537 1.00830 0.89074 0.95008 1.23159 0.99586 0.91182 0.97558 1.24120 0.93498 0.95354 0.97371 1.98419 1.37037 1.90639 1.75112 1.98434 1.81251 1.69089 1.52355 1.23129 0.98894 0.94261 0.93469 0.92188 0.89222 0.89179 0.76535 0.89968 0.90122 0.93206 0.89744 0.92115 0.88385 0.83077 0.92421 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.58 7.85 -10.98 -0.09 9.50 16 12 O -0.52 -11.40 15.51 5.56 0.09 -11.31 16 13 N -0.73 -9.20 5.06 -52.50 -0.27 -9.47 16 14 C 0.14 1.53 3.34 -66.58 -0.22 1.30 16 15 H 0.10 1.24 7.56 -51.93 -0.39 0.84 16 16 C -0.13 -1.40 6.78 -24.86 -0.17 -1.57 16 17 C 0.03 0.29 6.12 -1.90 -0.01 0.27 16 18 N -0.51 -3.91 5.23 -231.89 -1.21 -5.12 16 19 C 0.06 0.39 5.01 -4.98 -0.02 0.37 16 20 C -0.09 -0.56 9.10 -36.11 -0.33 -0.89 16 21 C -0.05 -0.33 6.97 28.93 0.20 -0.13 16 22 Cl -0.04 -0.28 26.92 -51.86 -1.40 -1.68 16 23 Cl -0.04 -0.27 29.06 -51.86 -1.51 -1.78 16 24 C 0.03 0.25 6.43 -2.76 -0.02 0.23 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 28 H 0.40 3.97 8.35 -40.82 -0.34 3.63 16 29 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.40 5.70 -51.93 -0.30 0.10 16 34 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.06 0.42 7.77 -51.93 -0.40 0.02 16 37 H 0.09 0.66 7.65 -51.93 -0.40 0.27 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -33.05 356.92 -10.39 -43.44 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.73 Total: 0.02 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.24 Total: -6.60 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.75 Total: -39.92 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -2.90 Total: -3.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.05 -10.39 -43.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490522149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.531 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds