Wall clock time and date at job start Tue Mar 31 2020 21:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08997 * 110.27541 * 32.90484 * 14 13 11 16 16 C 1.54599 * 110.30604 * 270.71466 * 14 13 11 17 17 C 1.54944 * 102.91756 * 219.12712 * 16 14 13 18 18 N 1.48527 * 103.23085 * 37.41118 * 17 16 14 19 19 C 1.46897 * 111.00393 * 200.27940 * 18 17 16 20 20 C 1.50697 * 109.46987 * 287.40031 * 19 18 17 21 21 C 1.31331 * 120.00234 * 125.00103 * 20 19 18 22 22 Cl 1.73599 * 120.00024 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.00159 * 179.97438 * 21 20 19 24 24 C 1.47904 * 105.81910 * 320.79699 * 18 17 16 25 25 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 29 29 H 1.09001 * 110.72240 * 337.47998 * 16 14 13 30 30 H 1.09001 * 110.72615 * 100.77285 * 16 14 13 31 31 H 1.09005 * 110.66435 * 278.97656 * 17 16 14 32 32 H 1.09003 * 110.80895 * 155.92032 * 17 16 14 33 33 H 1.09002 * 109.47040 * 47.39707 * 19 18 17 34 34 H 1.08999 * 109.47395 * 167.40093 * 19 18 17 35 35 H 1.08000 * 119.99986 * 304.99201 * 20 19 18 36 36 H 1.08999 * 109.91396 * 265.97049 * 24 18 17 37 37 H 1.09003 * 110.07916 * 144.77276 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.3942 -7.7673 -0.5608 16 6 2.1249 -8.2125 1.4442 17 6 2.5909 -9.6885 1.3731 18 7 3.7470 -9.6355 0.4422 19 6 4.0265 -10.9610 -0.1261 20 6 4.6402 -11.8418 0.9315 21 6 4.0962 -13.0027 1.2160 22 17 2.6697 -13.5225 0.3742 23 17 4.8035 -14.0177 2.4340 24 6 3.3688 -8.6740 -0.6161 25 1 -0.4850 0.8401 0.0004 26 1 3.1238 -3.7309 -0.8925 27 1 3.1252 -3.7317 0.8875 28 1 3.8009 -6.1834 -0.0040 29 1 2.7451 -7.6452 2.1382 30 1 1.0740 -8.1530 1.7271 31 1 1.8010 -10.3223 0.9699 32 1 2.9035 -10.0436 2.3551 33 1 3.0971 -11.4089 -0.4776 34 1 4.7195 -10.8594 -0.9613 35 1 5.5275 -11.5183 1.4555 36 1 2.9316 -9.2053 -1.4614 37 1 4.2448 -8.1136 -0.9429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490522149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:26 Heat of formation + Delta-G solvation = -48.820714 kcal Electronic energy + Delta-G solvation = -21266.682479 eV Core-core repulsion = 17642.444577 eV Total energy + Delta-G solvation = -3624.237903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06449 -39.66289 -38.35922 -37.53767 -35.97482 -34.57690 -34.20024 -31.73537 -30.69902 -28.90521 -27.63669 -26.20662 -22.54535 -22.19410 -21.55775 -21.22673 -19.83219 -18.10989 -17.88311 -17.36870 -16.86916 -16.68991 -16.50123 -16.28234 -15.93847 -15.41114 -14.90178 -14.59299 -14.55552 -14.32335 -13.89466 -13.79130 -13.34503 -13.15311 -13.00358 -12.89270 -12.78404 -12.67149 -12.59890 -12.48094 -12.34266 -12.17116 -11.96392 -11.87698 -11.71094 -11.13377 -10.92514 -10.26038 -10.11710 -10.04129 -9.48964 -8.65277 -8.33761 -6.11511 0.34601 0.49729 1.28218 1.40765 1.43225 1.48271 1.58585 1.62778 2.26299 2.30890 2.94602 3.00442 3.33220 3.49610 3.67633 3.96655 4.03631 4.09714 4.25900 4.28865 4.32244 4.35465 4.46725 4.53655 4.65684 4.76353 4.80240 4.88437 4.96702 5.02973 5.12555 5.43015 5.52930 5.74036 5.89768 6.20847 6.53485 7.07715 7.27298 8.75350 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.039408 B = 0.001707 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.346277 B =16395.322798 C =16647.436720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.134 3.866 15 H 0.075 0.925 16 C -0.134 4.134 17 C 0.043 3.957 18 N -0.509 5.509 19 C 0.063 3.937 20 C -0.085 4.085 21 C -0.057 4.057 22 Cl -0.047 7.047 23 Cl -0.043 7.043 24 C 0.040 3.960 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.417 0.583 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.162 0.838 36 H 0.069 0.931 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.413 -28.734 0.943 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.357 5.357 14 C 0.028 3.972 15 H 0.093 0.907 16 C -0.173 4.173 17 C -0.085 4.085 18 N -0.233 5.233 19 C -0.065 4.065 20 C -0.105 4.105 21 C -0.111 4.111 22 Cl -0.019 7.019 23 Cl -0.015 7.015 24 C -0.088 4.088 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.255 0.745 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.179 0.821 36 H 0.088 0.912 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.706 -28.971 1.227 31.658 hybrid contribution 0.897 0.864 -0.260 1.273 sum 13.603 -28.106 0.966 31.240 Atomic orbital electron populations 1.70185 1.07967 1.28568 1.48065 1.26128 0.95969 1.03334 0.93794 0.84956 0.78214 0.76041 0.78783 1.19311 1.20387 1.18164 1.23210 0.95367 0.92017 1.58757 0.89869 1.85574 1.10648 0.99255 1.97048 1.23376 1.03492 0.94383 1.06823 1.20055 0.86253 0.86664 0.74832 1.90690 1.17450 1.86059 1.50161 1.45826 1.10209 1.04405 1.75271 1.21806 0.97671 0.80813 0.96883 0.90653 1.22887 1.01498 0.96302 0.96595 1.23218 0.91665 0.95391 0.98212 1.64750 1.37045 1.06972 1.14557 1.21602 1.01234 0.88151 0.95479 1.23234 0.99528 0.90663 0.97066 1.24160 0.93562 0.95707 0.97701 1.98418 1.37496 1.90762 1.75258 1.98434 1.81268 1.69285 1.52507 1.23073 0.98449 0.93761 0.93560 0.92033 0.87105 0.87288 0.74462 0.90401 0.91806 0.93056 0.89116 0.92313 0.86661 0.82081 0.91229 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.54 19.02 7.85 87.66 0.69 19.70 16 12 O -0.57 -25.54 15.51 -3.02 -0.05 -25.59 16 13 N -0.70 -16.50 5.06 -438.39 -2.22 -18.72 16 14 C 0.13 2.78 3.34 45.87 0.15 2.93 16 15 H 0.08 1.94 7.56 -2.39 -0.02 1.92 16 16 C -0.13 -2.68 6.78 31.80 0.22 -2.47 16 17 C 0.04 0.64 6.12 86.65 0.53 1.17 16 18 N -0.51 -6.37 5.23 -887.58 -4.64 -11.02 16 19 C 0.06 0.60 5.01 85.56 0.43 1.03 16 20 C -0.08 -0.80 9.10 25.32 0.23 -0.57 16 21 C -0.06 -0.66 6.97 67.46 0.47 -0.19 16 22 Cl -0.05 -0.61 26.92 -2.72 -0.07 -0.68 16 23 Cl -0.04 -0.53 29.06 -2.72 -0.08 -0.61 16 24 C 0.04 0.53 6.43 86.44 0.56 1.08 16 25 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 26 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 28 H 0.42 7.01 8.35 -92.70 -0.77 6.23 16 29 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 0.76 7.81 -2.38 -0.02 0.74 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 0.62 5.70 -2.39 -0.01 0.61 16 34 H 0.12 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.07 0.81 7.77 -2.39 -0.02 0.79 16 37 H 0.11 1.14 7.65 -2.39 -0.02 1.12 16 Total: -1.00 -73.69 356.92 -0.76 -74.45 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.33 Total: 12.91 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.82 Total: -10.99 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -6.58 Total: -85.32 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.15 Total: -1.29 kcal Total: -73.69 -0.76 -74.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490522149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.633 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds