Wall clock time and date at job start Tue Mar 31 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00132 * 3 2 1 5 5 H 1.48498 * 109.47084 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.47198 * 149.99945 * 3 2 1 7 7 C 1.38796 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00128 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99591 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00044 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00101 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.36955 * 324.28409 * 14 13 11 16 16 C 1.54266 * 110.32047 * 86.46129 * 14 13 11 17 17 C 1.54377 * 105.06190 * 118.89565 * 16 14 13 18 18 N 1.48562 * 104.59407 * 336.14868 * 17 16 14 19 19 C 1.46895 * 111.00142 * 159.03785 * 18 17 16 20 20 C 1.50703 * 109.47036 * 74.57853 * 19 18 17 21 21 C 1.31336 * 120.00084 * 124.99887 * 20 19 18 22 22 Cl 1.73599 * 119.99645 * 0.02562 * 21 20 19 23 23 Cl 1.73597 * 120.00142 * 179.97438 * 21 20 19 24 24 C 1.48562 * 104.22433 * 39.48055 * 18 17 16 25 25 H 0.96996 * 120.00403 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47197 * 59.99759 * 10 9 7 27 27 H 1.08996 * 109.46780 * 299.99769 * 10 9 7 28 28 H 0.96998 * 120.00053 * 0.02562 * 13 11 10 29 29 H 1.09005 * 110.32054 * 237.79480 * 16 14 13 30 30 H 1.09003 * 110.32265 * 359.97438 * 16 14 13 31 31 H 1.09000 * 110.40820 * 94.92490 * 17 16 14 32 32 H 1.08989 * 110.41015 * 217.36711 * 17 16 14 33 33 H 1.09001 * 109.47512 * 194.57738 * 19 18 17 34 34 H 1.09000 * 109.47060 * 314.58314 * 19 18 17 35 35 H 1.08002 * 120.00127 * 305.00256 * 20 19 18 36 36 H 1.08998 * 110.41528 * 201.73764 * 24 18 17 37 37 H 1.08997 * 110.50874 * 79.34552 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7151 0.0019 15 1 1.4212 -7.7792 0.5994 16 6 2.0576 -8.1861 -1.4414 17 6 2.9843 -9.4034 -1.6482 18 7 4.0820 -9.2093 -0.6660 19 6 4.7635 -10.4788 -0.3806 20 6 5.6405 -10.8518 -1.5481 21 6 6.9186 -11.0883 -1.3602 22 17 7.5977 -10.9718 0.2332 23 17 7.9286 -11.5185 -2.7050 24 6 3.3993 -8.6873 0.5458 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8905 27 1 3.1245 -3.7312 -0.8894 28 1 3.8011 -6.1834 0.0004 29 1 1.0142 -8.4814 -1.5523 30 1 2.3054 -7.3964 -2.1507 31 1 2.4478 -10.3292 -1.4407 32 1 3.3800 -9.4117 -2.6637 33 1 5.3768 -10.3690 0.5139 34 1 4.0219 -11.2611 -0.2189 35 1 5.2179 -10.9246 -2.5393 36 1 4.1075 -8.1566 1.1822 37 1 2.9279 -9.5000 1.0984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490522150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:30 Heat of formation + Delta-G solvation = -25.979683 kcal Electronic energy + Delta-G solvation = -21313.182739 eV Core-core repulsion = 17689.935298 eV Total energy + Delta-G solvation = -3623.247441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02974 -38.55510 -37.76173 -36.99283 -35.05280 -33.24601 -32.41676 -30.78292 -29.54431 -27.97320 -25.62161 -25.37628 -21.92769 -21.37387 -20.47753 -20.15751 -17.86610 -17.42045 -16.62324 -16.41779 -15.97804 -15.60336 -14.95119 -14.79825 -14.76329 -14.18601 -14.03227 -13.82968 -13.26143 -12.98437 -12.86102 -12.73335 -12.36735 -12.19101 -12.07441 -11.91831 -11.71318 -11.61843 -11.54986 -11.11501 -11.05768 -11.04928 -11.00829 -10.74581 -9.80196 -9.59131 -9.37891 -9.06656 -9.02303 -8.79627 -8.22277 -6.48600 -6.20597 -3.90874 0.86603 1.02587 1.94408 3.05004 3.10269 3.23395 3.29069 3.33536 3.60136 3.73951 4.21556 4.23521 4.34575 4.50353 4.71817 4.84437 4.91734 5.01780 5.13579 5.14634 5.18375 5.26555 5.35903 5.44727 5.49316 5.58754 5.66500 5.85428 5.91859 6.02024 6.17259 6.34838 6.47867 6.71363 7.60967 7.76111 8.36557 8.64017 9.24876 10.86821 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001946 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.033661 B =14384.881204 C =15170.134573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.728 5.728 14 C 0.146 3.854 15 H 0.096 0.904 16 C -0.136 4.136 17 C 0.029 3.971 18 N -0.503 5.503 19 C 0.063 3.937 20 C -0.097 4.097 21 C -0.041 4.041 22 Cl -0.038 7.038 23 Cl -0.040 7.040 24 C 0.026 3.974 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.401 0.599 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.927 -26.890 -2.012 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.382 5.382 14 C 0.040 3.960 15 H 0.114 0.886 16 C -0.175 4.175 17 C -0.099 4.099 18 N -0.227 5.227 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.095 4.095 22 Cl -0.010 7.010 23 Cl -0.012 7.012 24 C -0.102 4.102 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.236 0.764 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.111 0.889 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.318 -26.778 -2.169 29.555 hybrid contribution 2.072 0.683 0.175 2.189 sum 14.389 -26.094 -1.993 29.866 Atomic orbital electron populations 1.70015 1.05942 1.27427 1.46947 1.24991 0.95030 0.99029 0.94569 0.86169 0.79418 0.81577 0.78348 1.20277 1.20774 1.19693 1.22869 0.94917 0.91665 1.58839 0.90931 1.85371 1.05014 0.96343 1.96719 1.23530 1.06503 0.95399 1.04943 1.20322 0.86541 0.86315 0.74911 1.90695 1.15382 1.85610 1.47661 1.46063 1.10049 1.04692 1.77403 1.21521 0.96694 0.81530 0.96243 0.88601 1.22803 0.99515 0.97684 0.97505 1.23253 0.91526 0.97640 0.97438 1.65455 1.24560 1.23981 1.08738 1.21527 0.97252 0.91647 0.96106 1.23042 0.91485 0.95543 1.01692 1.24016 0.91728 1.09626 0.84168 1.98415 1.85586 1.96544 1.20437 1.98433 1.69771 1.91649 1.41337 1.23425 0.96351 0.97809 0.92633 0.92209 0.89258 0.89218 0.76412 0.90408 0.90018 0.93367 0.89844 0.88655 0.91970 0.83733 0.88937 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.67 7.84 -10.98 -0.09 9.59 16 12 O -0.52 -11.44 15.56 5.55 0.09 -11.35 16 13 N -0.73 -9.40 5.00 -52.46 -0.26 -9.66 16 14 C 0.15 1.59 3.36 -66.54 -0.22 1.37 16 15 H 0.10 1.19 7.65 -51.93 -0.40 0.79 16 16 C -0.14 -1.37 6.78 -25.35 -0.17 -1.55 16 17 C 0.03 0.22 6.09 -2.18 -0.01 0.21 16 18 N -0.50 -3.88 5.33 -231.42 -1.23 -5.11 16 19 C 0.06 0.39 5.14 -4.98 -0.03 0.37 16 20 C -0.10 -0.61 9.18 -36.11 -0.33 -0.94 16 21 C -0.04 -0.29 6.97 28.93 0.20 -0.09 16 22 Cl -0.04 -0.28 26.92 -51.86 -1.40 -1.67 16 23 Cl -0.04 -0.29 29.06 -51.86 -1.51 -1.80 16 24 C 0.03 0.21 6.06 -2.18 -0.01 0.19 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.33 8.55 -40.82 -0.35 3.98 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.05 0.31 7.75 -51.93 -0.40 -0.10 16 32 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.10 0.61 5.95 -51.93 -0.31 0.30 16 34 H 0.06 0.33 7.77 -51.93 -0.40 -0.08 16 35 H 0.15 0.77 7.96 -52.49 -0.42 0.35 16 36 H 0.09 0.72 7.99 -51.93 -0.41 0.30 16 37 H 0.06 0.40 8.00 -51.93 -0.42 -0.01 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -33.26 357.28 -10.43 -43.69 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.75 Total: 0.05 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.24 Total: -6.65 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.76 Total: -40.21 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -2.90 Total: -3.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.26 -10.43 -43.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490522150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.711 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds