Wall clock time and date at job start Tue Mar 31 2020 21:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00132 * 3 2 1 5 5 H 1.48498 * 109.47084 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.47198 * 149.99945 * 3 2 1 7 7 C 1.38796 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99972 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00128 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99591 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00044 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00101 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.36955 * 324.28409 * 14 13 11 16 16 C 1.54266 * 110.32047 * 86.46129 * 14 13 11 17 17 C 1.54377 * 105.06190 * 118.89565 * 16 14 13 18 18 N 1.48562 * 104.59407 * 336.14868 * 17 16 14 19 19 C 1.46895 * 111.00142 * 159.03785 * 18 17 16 20 20 C 1.50703 * 109.47036 * 74.57853 * 19 18 17 21 21 C 1.31336 * 120.00084 * 124.99887 * 20 19 18 22 22 Cl 1.73599 * 119.99645 * 0.02562 * 21 20 19 23 23 Cl 1.73597 * 120.00142 * 179.97438 * 21 20 19 24 24 C 1.48562 * 104.22433 * 39.48055 * 18 17 16 25 25 H 0.96996 * 120.00403 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47197 * 59.99759 * 10 9 7 27 27 H 1.08996 * 109.46780 * 299.99769 * 10 9 7 28 28 H 0.96998 * 120.00053 * 0.02562 * 13 11 10 29 29 H 1.09005 * 110.32054 * 237.79480 * 16 14 13 30 30 H 1.09003 * 110.32265 * 359.97438 * 16 14 13 31 31 H 1.09000 * 110.40820 * 94.92490 * 17 16 14 32 32 H 1.08989 * 110.41015 * 217.36711 * 17 16 14 33 33 H 1.09001 * 109.47512 * 194.57738 * 19 18 17 34 34 H 1.09000 * 109.47060 * 314.58314 * 19 18 17 35 35 H 1.08002 * 120.00127 * 305.00256 * 20 19 18 36 36 H 1.08998 * 110.41528 * 201.73764 * 24 18 17 37 37 H 1.08997 * 110.50874 * 79.34552 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7151 0.0019 15 1 1.4212 -7.7792 0.5994 16 6 2.0576 -8.1861 -1.4414 17 6 2.9843 -9.4034 -1.6482 18 7 4.0820 -9.2093 -0.6660 19 6 4.7635 -10.4788 -0.3806 20 6 5.6405 -10.8518 -1.5481 21 6 6.9186 -11.0883 -1.3602 22 17 7.5977 -10.9718 0.2332 23 17 7.9286 -11.5185 -2.7050 24 6 3.3993 -8.6873 0.5458 25 1 -0.4850 0.8400 0.0004 26 1 3.1246 -3.7312 0.8905 27 1 3.1245 -3.7312 -0.8894 28 1 3.8011 -6.1834 0.0004 29 1 1.0142 -8.4814 -1.5523 30 1 2.3054 -7.3964 -2.1507 31 1 2.4478 -10.3292 -1.4407 32 1 3.3800 -9.4117 -2.6637 33 1 5.3768 -10.3690 0.5139 34 1 4.0219 -11.2611 -0.2189 35 1 5.2179 -10.9246 -2.5393 36 1 4.1075 -8.1566 1.1822 37 1 2.9279 -9.5000 1.0984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490522150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:29 Heat of formation + Delta-G solvation = -49.138193 kcal Electronic energy + Delta-G solvation = -21314.186967 eV Core-core repulsion = 17689.935298 eV Total energy + Delta-G solvation = -3624.251670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04802 -39.59584 -38.34976 -37.51674 -35.91821 -34.57833 -34.16074 -31.73076 -30.63269 -28.97507 -27.63962 -26.15592 -22.62030 -22.32076 -21.46493 -20.91926 -19.82660 -18.12646 -17.71835 -17.53033 -16.87241 -16.75310 -16.41132 -16.13039 -16.06477 -15.36734 -14.83329 -14.69061 -14.52236 -14.43775 -13.85873 -13.58607 -13.38444 -13.15545 -13.10522 -12.89345 -12.77605 -12.63501 -12.58610 -12.45339 -12.26798 -12.16577 -11.86112 -11.71723 -11.65808 -11.13562 -10.89865 -10.26455 -10.15356 -10.05980 -9.46604 -8.65141 -8.33904 -6.11491 0.36119 0.53272 1.28367 1.42911 1.43026 1.48056 1.58704 1.64752 2.27197 2.33780 3.00122 3.01510 3.33387 3.50743 3.69968 3.98216 4.04223 4.13549 4.22096 4.28851 4.32785 4.36391 4.49548 4.53680 4.71261 4.75547 4.81550 4.86623 4.99198 5.06825 5.18584 5.42787 5.52212 5.77529 5.92000 6.20723 6.55822 7.07510 7.29065 8.75235 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001946 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.033661 B =14384.881204 C =15170.134573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.702 5.702 14 C 0.139 3.861 15 H 0.079 0.921 16 C -0.136 4.136 17 C 0.038 3.962 18 N -0.512 5.512 19 C 0.064 3.936 20 C -0.089 4.089 21 C -0.052 4.052 22 Cl -0.043 7.043 23 Cl -0.045 7.045 24 C 0.036 3.964 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.415 0.585 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 -27.817 -1.989 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.356 5.356 14 C 0.034 3.966 15 H 0.098 0.902 16 C -0.175 4.175 17 C -0.090 4.090 18 N -0.236 5.236 19 C -0.064 4.064 20 C -0.109 4.109 21 C -0.106 4.106 22 Cl -0.015 7.015 23 Cl -0.017 7.017 24 C -0.092 4.092 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.252 0.748 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.117 0.883 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.531 -27.750 -2.147 31.398 hybrid contribution 1.424 0.834 0.159 1.658 sum 15.955 -26.917 -1.988 31.354 Atomic orbital electron populations 1.70178 1.07928 1.28582 1.48050 1.26122 0.95981 1.03302 0.93792 0.84959 0.78204 0.76071 0.78783 1.19334 1.20278 1.18241 1.23201 0.95320 0.92087 1.58777 0.90022 1.85528 1.10547 0.99147 1.97034 1.23375 1.03494 0.94646 1.06604 1.20008 0.86265 0.86582 0.74963 1.90685 1.17291 1.86050 1.50269 1.45838 1.10126 1.04590 1.75040 1.21715 0.97306 0.80620 0.96977 0.90244 1.22742 1.00133 0.98389 0.96240 1.23208 0.91022 0.96857 0.97895 1.65447 1.24567 1.25068 1.08535 1.21556 0.97450 0.91386 0.96014 1.23175 0.91101 0.94399 1.02214 1.24079 0.91950 1.10677 0.83932 1.98412 1.85738 1.96622 1.20746 1.98431 1.69998 1.91765 1.41529 1.23349 0.95518 0.97508 0.92806 0.92007 0.87367 0.87538 0.74763 0.90814 0.92018 0.91567 0.89105 0.88651 0.90271 0.82667 0.88344 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.27 9.50 67.95 0.65 -30.63 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.54 19.36 7.84 87.66 0.69 20.05 16 12 O -0.56 -25.53 15.56 -3.04 -0.05 -25.58 16 13 N -0.70 -17.22 5.00 -438.28 -2.19 -19.41 16 14 C 0.14 2.85 3.36 45.89 0.15 3.00 16 15 H 0.08 1.94 7.65 -2.39 -0.02 1.92 16 16 C -0.14 -2.60 6.78 31.49 0.21 -2.38 16 17 C 0.04 0.47 6.09 86.45 0.53 0.99 16 18 N -0.51 -6.36 5.33 -886.07 -4.72 -11.08 16 19 C 0.06 0.59 5.14 85.56 0.44 1.03 16 20 C -0.09 -0.87 9.18 25.32 0.23 -0.64 16 21 C -0.05 -0.64 6.97 67.45 0.47 -0.17 16 22 Cl -0.04 -0.56 26.92 -2.72 -0.07 -0.63 16 23 Cl -0.05 -0.59 29.06 -2.72 -0.08 -0.67 16 24 C 0.04 0.47 6.06 86.45 0.52 1.00 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 27 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 28 H 0.42 8.00 8.55 -92.71 -0.79 7.21 16 29 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 31 H 0.07 0.61 7.75 -2.39 -0.02 0.59 16 32 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 33 H 0.10 0.94 5.95 -2.39 -0.01 0.92 16 34 H 0.08 0.52 7.77 -2.39 -0.02 0.50 16 35 H 0.16 1.20 7.96 -2.91 -0.02 1.17 16 36 H 0.10 1.22 7.99 -2.39 -0.02 1.20 16 37 H 0.08 0.80 8.00 -2.39 -0.02 0.78 16 Total: -1.00 -74.03 357.28 -0.85 -74.89 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.31 Total: 13.20 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.80 Total: -11.25 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -6.62 Total: -86.24 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.15 Total: -1.30 kcal Total: -74.03 -0.85 -74.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490522150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.751 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds