Wall clock time and date at job start Tue Mar 31 2020 20:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47177 * 215.47849 * 3 2 1 5 5 C 1.36888 * 120.00216 * 269.09369 * 4 3 2 6 6 H 1.08004 * 120.00272 * 200.86371 * 5 4 3 7 7 C 1.39002 * 120.00006 * 21.12962 * 5 4 3 8 8 N 1.31406 * 119.99890 * 23.49230 * 7 5 4 9 9 Si 1.86794 * 120.00470 * 203.49284 * 7 5 4 10 10 H 1.48504 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47274 * 119.99875 * 9 7 5 12 12 H 1.48499 * 109.47520 * 240.00178 * 9 7 5 13 13 C 1.34784 * 120.00383 * 89.08704 * 4 3 2 14 14 O 1.21729 * 120.00379 * 175.02367 * 13 4 3 15 15 C 1.46521 * 119.99504 * 355.02500 * 13 4 3 16 16 C 1.37793 * 126.94492 * 266.57476 * 15 13 4 17 17 Br 1.89101 * 126.20557 * 359.91893 * 16 15 13 18 18 N 1.33218 * 107.58492 * 179.79023 * 16 15 13 19 19 C 1.31389 * 109.88086 * 0.39903 * 18 16 15 20 20 N 1.34299 * 109.21162 * 359.84086 * 19 18 16 21 21 C 1.47003 * 111.34014 * 179.78854 * 20 19 18 22 22 C 1.54382 * 105.48318 * 17.08700 * 21 20 19 23 23 C 1.51693 * 140.86304 * 179.90991 * 19 18 16 24 24 H 1.08996 * 109.47376 * 95.47861 * 3 2 1 25 25 H 1.09001 * 109.47104 * 335.47862 * 3 2 1 26 26 H 0.96997 * 120.00405 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.24299 * 136.08962 * 21 20 19 28 28 H 1.09001 * 110.24311 * 258.08225 * 21 20 19 29 29 H 1.09004 * 110.98497 * 92.43932 * 22 21 20 30 30 H 1.09007 * 110.98198 * 216.23480 * 22 21 20 31 31 H 1.08993 * 110.47850 * 44.67735 * 23 19 18 32 32 H 1.09003 * 110.58660 * 282.11064 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1256 0.8016 5 6 3.3411 2.3341 0.2073 6 1 3.9976 3.0470 0.6840 7 6 2.7410 2.6460 -1.0071 8 7 1.6282 2.0448 -1.3635 9 14 3.5162 3.9195 -2.1323 10 1 4.7549 4.4460 -1.5048 11 1 3.8496 3.2910 -3.4358 12 1 2.5602 5.0347 -2.3507 13 6 3.3030 0.9708 2.1244 14 8 3.7934 1.8762 2.7738 15 6 2.9380 -0.2872 2.7808 16 6 1.7485 -0.5767 3.4132 17 35 0.2701 0.5876 3.5991 18 7 1.8279 -1.8266 3.8674 19 6 3.0000 -2.3380 3.5658 20 7 3.7216 -1.4244 2.8962 21 6 5.0481 -1.9477 2.5389 22 6 4.9400 -3.4806 2.6871 23 6 3.8020 -3.6158 3.7236 24 1 2.9713 0.0989 -1.0229 25 1 2.9717 -0.9342 0.4265 26 1 1.2091 2.2627 -2.2107 27 1 5.2927 -1.6846 1.5099 28 1 5.8041 -1.5554 3.2192 29 1 4.6634 -3.9457 1.7408 30 1 5.8692 -3.9022 3.0705 31 1 3.1831 -4.4846 3.4994 32 1 4.2108 -3.6898 4.7313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546233586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:34 Heat of formation + Delta-G solvation = 85.386856 kcal Electronic energy + Delta-G solvation = -21563.112686 eV Core-core repulsion = 18186.406410 eV Total energy + Delta-G solvation = -3376.706276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.29213 -38.67729 -36.39357 -35.73795 -34.21296 -32.21473 -31.66356 -30.91632 -28.09835 -27.60845 -27.44809 -25.01033 -22.19726 -21.76186 -20.17729 -19.24067 -18.04061 -17.00740 -16.77220 -16.37229 -15.26521 -14.76140 -14.47862 -14.17810 -13.93140 -13.79842 -13.46053 -13.03694 -13.00137 -12.90973 -12.35326 -12.05149 -11.80128 -11.58350 -11.52242 -11.26203 -11.20046 -10.61589 -10.52867 -10.42177 -10.34600 -10.16797 -9.67881 -9.41413 -9.30291 -8.94308 -8.17303 -7.92477 -6.62733 -4.14721 1.84702 1.89535 2.61289 3.00641 3.02652 3.15368 3.22026 3.45484 3.76385 3.86757 4.03294 4.16904 4.28162 4.51609 4.58407 4.73528 4.77829 5.17682 5.21566 5.25633 5.26482 5.41620 5.54180 5.65382 5.71356 5.90296 6.24111 6.30658 6.49458 7.00301 7.35117 7.72638 8.03592 8.11719 8.80129 8.93505 9.01235 9.53761 10.40667 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.006425 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.422618 B = 4356.996374 C = 5481.419384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.238 3.762 3 C 0.228 3.772 4 N -0.416 5.416 5 C -0.320 4.320 6 H 0.113 0.887 7 C 0.038 3.962 8 N -0.856 5.856 9 Si 0.929 3.071 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.514 3.486 14 O -0.552 6.552 15 C 0.027 3.973 16 C 0.042 3.958 17 Br 0.029 6.971 18 N -0.457 5.457 19 C 0.188 3.812 20 N -0.456 5.456 21 C 0.098 3.902 22 C -0.128 4.128 23 C -0.036 4.036 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.277 0.723 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -11.926 4.252 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.081 4.081 3 C 0.101 3.899 4 N -0.135 5.135 5 C -0.447 4.447 6 H 0.131 0.869 7 C -0.168 4.168 8 N -0.492 5.492 9 Si 0.754 3.246 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.300 3.700 14 O -0.433 6.433 15 C -0.094 4.094 16 C -0.169 4.169 17 Br 0.112 6.888 18 N -0.177 5.177 19 C -0.075 4.075 20 N -0.141 5.141 21 C -0.023 4.023 22 C -0.166 4.166 23 C -0.076 4.076 24 H 0.135 0.865 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.523 -11.294 4.759 13.063 hybrid contribution 1.370 0.873 -1.115 1.970 sum 5.893 -10.421 3.644 12.514 Atomic orbital electron populations 1.80836 1.13129 1.09888 1.08966 1.28644 0.94902 0.91777 0.92730 1.18531 0.83025 0.89253 0.99111 1.43600 1.55145 1.10565 1.04154 1.19765 1.27312 0.94524 1.03123 0.86912 1.25412 0.94060 0.98578 0.98795 1.69804 1.13682 1.42800 1.22908 0.85828 0.79575 0.79833 0.79349 1.18856 1.20304 1.20596 1.16685 0.86418 0.84995 0.81909 1.90714 1.47288 1.42214 1.63079 1.21407 0.91489 0.88977 1.07532 1.22170 0.93764 0.93828 1.07155 1.96715 1.37253 1.57473 1.97373 1.69482 1.17505 1.07244 1.23491 1.24218 0.89456 0.94011 0.99840 1.46552 1.14207 1.11243 1.42075 1.22531 0.81862 0.94385 1.03532 1.22763 0.99732 0.93482 1.00641 1.20681 0.94176 0.91933 1.00764 0.86524 0.90907 0.91233 0.88423 0.88684 0.89091 0.87849 0.88279 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.08 18.54 42.15 0.78 -10.30 16 2 C 0.24 5.53 12.89 -20.76 -0.27 5.26 16 3 C 0.23 4.71 4.94 -6.83 -0.03 4.67 16 4 N -0.42 -9.80 2.58 -119.48 -0.31 -10.11 16 5 C -0.32 -8.07 9.25 -15.01 -0.14 -8.20 16 6 H 0.11 2.98 7.42 -52.48 -0.39 2.59 16 7 C 0.04 0.91 4.80 -17.45 -0.08 0.83 16 8 N -0.86 -21.33 9.45 55.50 0.52 -20.80 16 9 Si 0.93 18.90 29.61 -169.99 -5.03 13.87 16 10 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 13 C 0.51 12.28 7.29 -12.92 -0.09 12.19 16 14 O -0.55 -14.98 16.77 5.16 0.09 -14.89 16 15 C 0.03 0.56 5.16 -81.64 -0.42 0.14 16 16 C 0.04 0.89 7.67 -17.11 -0.13 0.76 16 17 Br 0.03 0.62 33.89 -68.01 -2.30 -1.69 16 18 N -0.46 -8.92 11.21 -8.41 -0.09 -9.01 16 19 C 0.19 2.92 8.55 -154.85 -1.32 1.59 16 20 N -0.46 -7.36 3.46 -107.94 -0.37 -7.73 16 21 C 0.10 1.01 7.78 -3.04 -0.02 0.98 16 22 C -0.13 -0.81 7.17 -25.21 -0.18 -0.99 16 23 C -0.04 -0.32 6.86 -26.59 -0.18 -0.50 16 24 H 0.12 2.30 7.09 -51.93 -0.37 1.93 16 25 H 0.07 1.28 6.88 -51.93 -0.36 0.92 16 26 H 0.28 6.65 8.31 -40.82 -0.34 6.32 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -33.73 307.76 -7.75 -41.48 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -2.79 Total: -2.18 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: -2.88 Total: 16.73 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.53 Total: -57.95 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.09 Total: -14.89 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Atomic # 35 Polarization: 0.62 SS G_CDS: -2.30 Total: -1.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.73 -7.75 -41.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.864 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds