Wall clock time and date at job start Tue Mar 31 2020 20:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47177 * 215.47849 * 3 2 1 5 5 C 1.36888 * 120.00216 * 269.09369 * 4 3 2 6 6 H 1.08004 * 120.00272 * 200.86371 * 5 4 3 7 7 C 1.39002 * 120.00006 * 21.12962 * 5 4 3 8 8 N 1.31406 * 119.99890 * 23.49230 * 7 5 4 9 9 Si 1.86794 * 120.00470 * 203.49284 * 7 5 4 10 10 H 1.48504 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47274 * 119.99875 * 9 7 5 12 12 H 1.48499 * 109.47520 * 240.00178 * 9 7 5 13 13 C 1.34784 * 120.00383 * 89.08704 * 4 3 2 14 14 O 1.21729 * 120.00379 * 175.02367 * 13 4 3 15 15 C 1.46521 * 119.99504 * 355.02500 * 13 4 3 16 16 C 1.37793 * 126.94492 * 266.57476 * 15 13 4 17 17 Br 1.89101 * 126.20557 * 359.91893 * 16 15 13 18 18 N 1.33218 * 107.58492 * 179.79023 * 16 15 13 19 19 C 1.31389 * 109.88086 * 0.39903 * 18 16 15 20 20 N 1.34299 * 109.21162 * 359.84086 * 19 18 16 21 21 C 1.47003 * 111.34014 * 179.78854 * 20 19 18 22 22 C 1.54382 * 105.48318 * 17.08700 * 21 20 19 23 23 C 1.51693 * 140.86304 * 179.90991 * 19 18 16 24 24 H 1.08996 * 109.47376 * 95.47861 * 3 2 1 25 25 H 1.09001 * 109.47104 * 335.47862 * 3 2 1 26 26 H 0.96997 * 120.00405 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.24299 * 136.08962 * 21 20 19 28 28 H 1.09001 * 110.24311 * 258.08225 * 21 20 19 29 29 H 1.09004 * 110.98497 * 92.43932 * 22 21 20 30 30 H 1.09007 * 110.98198 * 216.23480 * 22 21 20 31 31 H 1.08993 * 110.47850 * 44.67735 * 23 19 18 32 32 H 1.09003 * 110.58660 * 282.11064 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1256 0.8016 5 6 3.3411 2.3341 0.2073 6 1 3.9976 3.0470 0.6840 7 6 2.7410 2.6460 -1.0071 8 7 1.6282 2.0448 -1.3635 9 14 3.5162 3.9195 -2.1323 10 1 4.7549 4.4460 -1.5048 11 1 3.8496 3.2910 -3.4358 12 1 2.5602 5.0347 -2.3507 13 6 3.3030 0.9708 2.1244 14 8 3.7934 1.8762 2.7738 15 6 2.9380 -0.2872 2.7808 16 6 1.7485 -0.5767 3.4132 17 35 0.2701 0.5876 3.5991 18 7 1.8279 -1.8266 3.8674 19 6 3.0000 -2.3380 3.5658 20 7 3.7216 -1.4244 2.8962 21 6 5.0481 -1.9477 2.5389 22 6 4.9400 -3.4806 2.6871 23 6 3.8020 -3.6158 3.7236 24 1 2.9713 0.0989 -1.0229 25 1 2.9717 -0.9342 0.4265 26 1 1.2091 2.2627 -2.2107 27 1 5.2927 -1.6846 1.5099 28 1 5.8041 -1.5554 3.2192 29 1 4.6634 -3.9457 1.7408 30 1 5.8692 -3.9022 3.0705 31 1 3.1831 -4.4846 3.4994 32 1 4.2108 -3.6898 4.7313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546233586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:33 Heat of formation + Delta-G solvation = 63.544355 kcal Electronic energy + Delta-G solvation = -21564.059848 eV Core-core repulsion = 18186.406410 eV Total energy + Delta-G solvation = -3377.653438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.57993 -40.47462 -37.65990 -37.36256 -36.10578 -33.98825 -32.93453 -32.44838 -29.55051 -29.18496 -28.54249 -26.75301 -23.57654 -22.81607 -21.37820 -20.72277 -19.89965 -18.60190 -18.16338 -17.77903 -16.93585 -16.18086 -16.08731 -15.62047 -15.27486 -14.99498 -14.76690 -14.72139 -14.32296 -14.16105 -13.87152 -13.42787 -13.26790 -13.12079 -12.90301 -12.49485 -12.46177 -12.38649 -12.24407 -12.06086 -11.68661 -11.54475 -11.30930 -11.22229 -10.82015 -10.60802 -10.06350 -9.39020 -8.49694 -6.09797 0.33637 0.46905 1.13312 1.45812 1.49033 1.60950 1.65985 1.78355 2.10440 2.27835 2.37924 2.80180 2.90786 3.02614 3.49093 3.51147 3.70768 3.92991 4.03734 4.24008 4.26544 4.47409 4.58180 4.60900 4.84833 4.91512 5.12453 5.21669 5.22837 5.41022 5.80743 5.89409 6.23269 6.69326 6.91348 7.09629 7.14675 7.68241 8.52441 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.006425 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.422618 B = 4356.996374 C = 5481.419384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.247 3.753 3 C 0.232 3.768 4 N -0.420 5.420 5 C -0.348 4.348 6 H 0.091 0.909 7 C 0.013 3.987 8 N -0.876 5.876 9 Si 0.994 3.006 10 H -0.265 1.265 11 H -0.259 1.259 12 H -0.288 1.288 13 C 0.516 3.484 14 O -0.598 6.598 15 C -0.002 4.002 16 C 0.027 3.973 17 Br 0.007 6.993 18 N -0.495 5.495 19 C 0.208 3.792 20 N -0.455 5.455 21 C 0.078 3.922 22 C -0.106 4.106 23 C -0.036 4.036 24 H 0.127 0.873 25 H 0.105 0.895 26 H 0.279 0.721 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.121 0.879 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -14.534 3.528 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.072 4.072 3 C 0.105 3.895 4 N -0.138 5.138 5 C -0.475 4.475 6 H 0.109 0.891 7 C -0.192 4.192 8 N -0.512 5.512 9 Si 0.817 3.183 10 H -0.189 1.189 11 H -0.183 1.183 12 H -0.214 1.214 13 C 0.304 3.696 14 O -0.482 6.482 15 C -0.124 4.124 16 C -0.184 4.184 17 Br 0.090 6.910 18 N -0.215 5.215 19 C -0.057 4.057 20 N -0.138 5.138 21 C -0.041 4.041 22 C -0.143 4.143 23 C -0.074 4.074 24 H 0.145 0.855 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.164 0.836 31 H 0.139 0.861 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.701 -13.943 4.010 15.981 hybrid contribution 0.749 1.598 -0.822 1.947 sum 7.450 -12.345 3.188 14.767 Atomic orbital electron populations 1.80822 1.14201 1.10935 1.10129 1.29127 0.95483 0.90834 0.91712 1.18769 0.81496 0.89645 0.99543 1.43701 1.54740 1.10865 1.04498 1.19717 1.28229 0.95385 1.04157 0.89104 1.26109 0.93861 1.00104 0.99094 1.69877 1.14264 1.43862 1.23164 0.84881 0.78261 0.77228 0.77974 1.18937 1.18334 1.21430 1.17000 0.85152 0.85695 0.81787 1.90662 1.49243 1.44221 1.64120 1.20748 0.92664 0.89740 1.09278 1.22179 0.93504 0.94713 1.08012 1.96653 1.38421 1.58517 1.97447 1.69456 1.20078 1.06648 1.25317 1.25621 0.88010 0.95750 0.96328 1.46886 1.15901 1.09561 1.41462 1.23167 0.79356 0.97251 1.04301 1.22892 1.00583 0.90022 1.00848 1.21151 0.94217 0.88961 1.03117 0.85515 0.87707 0.91045 0.87720 0.87618 0.87604 0.83563 0.86124 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -24.01 18.54 20.00 0.37 -23.64 16 2 C 0.25 11.48 12.89 89.44 1.15 12.63 16 3 C 0.23 9.46 4.94 84.57 0.42 9.87 16 4 N -0.42 -20.08 2.58 -650.14 -1.67 -21.76 16 5 C -0.35 -17.88 9.25 84.09 0.78 -17.10 16 6 H 0.09 5.00 7.42 -2.91 -0.02 4.98 16 7 C 0.01 0.63 4.80 84.94 0.41 1.04 16 8 N -0.88 -43.56 9.45 21.67 0.20 -43.36 16 9 Si 0.99 38.54 29.61 68.60 2.03 40.57 16 10 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 11 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 12 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 13 C 0.52 25.25 7.29 86.40 0.63 25.88 16 14 O -0.60 -33.79 16.77 -4.44 -0.07 -33.86 16 15 C 0.00 -0.09 5.16 40.13 0.21 0.12 16 16 C 0.03 1.17 7.67 84.38 0.65 1.82 16 17 Br 0.01 0.29 33.89 -20.37 -0.69 -0.40 16 18 N -0.49 -18.96 11.21 -180.53 -2.02 -20.98 16 19 C 0.21 5.91 8.55 138.42 1.18 7.10 16 20 N -0.45 -13.80 3.46 -495.43 -1.71 -15.51 16 21 C 0.08 1.32 7.78 86.75 0.67 2.00 16 22 C -0.11 -0.73 7.17 31.58 0.23 -0.50 16 23 C -0.04 -0.45 6.86 30.68 0.21 -0.24 16 24 H 0.13 4.88 7.09 -2.39 -0.02 4.87 16 25 H 0.11 3.54 6.88 -2.39 -0.02 3.53 16 26 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.15 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.73 307.76 4.15 -73.58 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.18 Total: 2.74 kcal Atomic # 6 Polarization: 36.08 SS G_CDS: 6.54 Total: 42.62 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -4.83 Total: -125.24 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.07 Total: -33.86 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -0.69 Total: -0.40 kcal Total: -77.73 4.15 -73.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.124 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds