Wall clock time and date at job start Tue Mar 31 2020 20:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48499 * 109.47021 * 240.00334 * 3 2 1 5 5 H 1.48505 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47334 * 119.99923 * 3 2 1 7 7 C 1.40049 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99761 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00427 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99909 * 179.97438 * 9 7 2 12 12 N 1.40099 * 120.00253 * 180.02562 * 11 9 7 13 13 C 1.34517 * 124.45736 * 284.95987 * 12 11 9 14 14 O 1.21461 * 125.70491 * 0.02562 * 13 12 11 15 15 C 1.47770 * 108.59423 * 180.02562 * 13 12 11 16 16 C 1.38604 * 134.28094 * 179.97438 * 15 13 12 17 17 C 1.38562 * 119.73243 * 180.02562 * 16 15 13 18 18 C 1.38338 * 120.44854 * 359.96564 * 17 16 15 19 19 Br 1.89107 * 119.77817 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.43834 * 0.05153 * 18 17 16 21 21 C 1.38525 * 119.70861 * 359.96631 * 20 18 17 22 22 C 1.34519 * 124.46110 * 104.99874 * 12 11 9 23 23 O 1.21453 * 125.71407 * 359.97438 * 22 12 11 24 24 H 0.96998 * 120.00353 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00239 * 0.02562 * 11 9 7 26 26 H 1.07994 * 120.13719 * 0.04811 * 16 15 13 27 27 H 1.08000 * 119.77055 * 180.02562 * 17 16 15 28 28 H 1.08004 * 120.14153 * 180.23563 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4804 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 7 1.2486 -4.8610 0.0022 13 6 0.6205 -5.3768 1.0741 14 8 0.5712 -4.8719 2.1777 15 6 0.0005 -6.6603 0.6846 16 6 -0.7539 -7.6125 1.3519 17 6 -1.1939 -8.7386 0.6749 18 6 -0.8859 -8.9180 -0.6617 19 35 -1.4969 -10.4616 -1.5673 20 6 -0.1314 -7.9733 -1.3421 21 6 0.3152 -6.8430 -0.6773 22 6 1.1162 -5.6640 -1.0689 23 8 1.5774 -5.4551 -2.1728 24 1 -0.4850 0.8400 0.0004 25 1 2.9190 -3.6477 0.0013 26 1 -0.9980 -7.4772 2.3951 27 1 -1.7821 -9.4807 1.1942 28 1 0.1030 -8.1163 -2.3866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557224172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:45 Heat of formation + Delta-G solvation = -11.407097 kcal Electronic energy + Delta-G solvation = -20244.583073 eV Core-core repulsion = 16695.553650 eV Total energy + Delta-G solvation = -3549.029423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05093 -38.80041 -38.30510 -37.09798 -35.42820 -33.39723 -32.59968 -32.00483 -30.86467 -29.23811 -26.47952 -24.98996 -23.84973 -22.02388 -21.10951 -19.66857 -18.12973 -17.60034 -17.28115 -16.54998 -16.02481 -15.39914 -15.34388 -15.17804 -14.53464 -14.29310 -14.12790 -13.68236 -13.44960 -12.74908 -12.68353 -12.60182 -12.08647 -11.47895 -11.25966 -11.10930 -10.81477 -10.74728 -10.56729 -10.37155 -10.23823 -9.76677 -9.56173 -9.21756 -9.03568 -8.23914 -7.97512 -6.41475 -4.90495 -0.13921 0.60279 1.07508 1.87841 2.03066 3.08784 3.13533 3.16324 3.22026 3.29610 3.59496 3.98621 4.23449 4.29335 4.35947 4.56676 4.78836 4.80639 4.89355 5.38141 5.51448 5.52470 5.57377 5.68003 6.09252 6.87494 7.07181 7.24701 7.45931 7.49867 8.00546 8.37483 8.77502 9.02336 10.29120 10.50160 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.034175 B = 0.002785 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.125017 B =10052.676413 C =10354.544989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.086 3.914 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.553 3.447 10 O -0.558 6.558 11 N -0.540 5.540 12 N -0.364 5.364 13 C 0.572 3.428 14 O -0.441 6.441 15 C -0.106 4.106 16 C -0.042 4.042 17 C -0.068 4.068 18 C -0.079 4.079 19 Br -0.031 7.031 20 C -0.021 4.021 21 C -0.121 4.121 22 C 0.572 3.428 23 O -0.456 6.456 24 H 0.275 0.725 25 H 0.407 0.593 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -21.539 -0.528 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.097 0.903 9 C 0.359 3.641 10 O -0.436 6.436 11 N -0.295 5.295 12 N -0.191 5.191 13 C 0.358 3.642 14 O -0.310 6.310 15 C -0.112 4.112 16 C -0.062 4.062 17 C -0.088 4.088 18 C -0.159 4.159 19 Br 0.055 6.945 20 C -0.041 4.041 21 C -0.127 4.127 22 C 0.359 3.641 23 O -0.326 6.326 24 H 0.085 0.915 25 H 0.247 0.753 26 H 0.171 0.829 27 H 0.169 0.831 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.794 -21.502 -0.864 21.700 hybrid contribution 0.981 1.131 0.133 1.503 sum -1.813 -20.370 -0.731 20.464 Atomic orbital electron populations 1.69990 1.07227 1.28201 1.33373 1.25756 0.94846 1.00559 0.92431 0.86180 0.79631 0.79844 0.79719 1.18950 1.20317 1.18940 1.20575 0.93903 0.87139 1.54660 0.90349 1.19003 0.87985 0.80554 0.76600 1.90648 1.13806 1.84508 1.54593 1.46635 1.06496 0.91696 1.84692 1.45082 1.47949 1.15334 1.10723 1.18388 0.78017 0.83748 0.84014 1.90800 1.54911 1.64027 1.21241 1.20788 0.99704 0.95727 0.94953 1.20782 0.93663 0.90790 1.00964 1.21359 0.97799 0.97438 0.92207 1.21929 1.02905 0.95324 0.95756 1.96791 1.87712 1.33023 1.77017 1.20617 0.93131 0.89824 1.00564 1.20532 1.01127 0.96005 0.95042 1.18450 0.79228 0.82458 0.83914 1.90783 1.46246 1.74988 1.20554 0.91451 0.75322 0.82911 0.83132 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.41 11.83 55.55 0.66 -21.76 15 2 C 0.09 2.33 5.50 -17.37 -0.10 2.24 15 3 Si 0.92 19.58 29.56 -169.99 -5.02 14.56 15 4 H -0.26 -5.45 7.11 56.52 0.40 -5.04 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.52 -14.48 9.54 -35.63 -0.34 -14.82 15 8 H 0.08 1.92 7.85 -52.49 -0.41 1.50 15 9 C 0.55 15.91 7.81 -12.99 -0.10 15.81 15 10 O -0.56 -18.29 15.24 5.20 0.08 -18.21 15 11 N -0.54 -12.81 6.06 30.19 0.18 -12.63 15 12 N -0.36 -7.84 2.95 -13.26 -0.04 -7.88 15 13 C 0.57 11.53 7.98 -12.48 -0.10 11.43 15 14 O -0.44 -10.14 17.99 5.40 0.10 -10.04 15 15 C -0.11 -1.60 6.40 -104.83 -0.67 -2.27 15 16 C -0.04 -0.45 10.09 -39.33 -0.40 -0.85 15 17 C -0.07 -0.59 9.77 -39.43 -0.38 -0.97 15 18 C -0.08 -0.77 6.23 -39.36 -0.25 -1.01 15 19 Br -0.03 -0.26 33.68 -68.01 -2.29 -2.55 15 20 C -0.02 -0.24 9.83 -39.29 -0.39 -0.63 15 21 C -0.12 -1.82 6.40 -104.84 -0.67 -2.49 15 22 C 0.57 11.09 8.19 -12.46 -0.10 10.99 15 23 O -0.46 -9.68 17.99 5.41 0.10 -9.59 15 24 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 25 H 0.41 8.18 8.81 -182.59 -1.61 6.57 15 26 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.15 0.83 8.06 -52.49 -0.42 0.41 15 28 H 0.15 1.54 8.06 -52.48 -0.42 1.11 15 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -36.50 293.50 -7.74 -44.24 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.42 Total: 2.01 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: -3.49 Total: 17.43 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.80 Total: -42.27 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: 0.27 Total: -37.84 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.29 Total: -2.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.50 -7.74 -44.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557224172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.829 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds