Wall clock time and date at job start Tue Mar 31 2020 20:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48499 * 109.47021 * 240.00334 * 3 2 1 5 5 H 1.48505 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47334 * 119.99923 * 3 2 1 7 7 C 1.40049 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99761 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00427 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99909 * 179.97438 * 9 7 2 12 12 N 1.40099 * 120.00253 * 180.02562 * 11 9 7 13 13 C 1.34517 * 124.45736 * 284.95987 * 12 11 9 14 14 O 1.21461 * 125.70491 * 0.02562 * 13 12 11 15 15 C 1.47770 * 108.59423 * 180.02562 * 13 12 11 16 16 C 1.38604 * 134.28094 * 179.97438 * 15 13 12 17 17 C 1.38562 * 119.73243 * 180.02562 * 16 15 13 18 18 C 1.38338 * 120.44854 * 359.96564 * 17 16 15 19 19 Br 1.89107 * 119.77817 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.43834 * 0.05153 * 18 17 16 21 21 C 1.38525 * 119.70861 * 359.96631 * 20 18 17 22 22 C 1.34519 * 124.46110 * 104.99874 * 12 11 9 23 23 O 1.21453 * 125.71407 * 359.97438 * 22 12 11 24 24 H 0.96998 * 120.00353 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00239 * 0.02562 * 11 9 7 26 26 H 1.07994 * 120.13719 * 0.04811 * 16 15 13 27 27 H 1.08000 * 119.77055 * 180.02562 * 17 16 15 28 28 H 1.08004 * 120.14153 * 180.23563 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4804 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 7 1.2486 -4.8610 0.0022 13 6 0.6205 -5.3768 1.0741 14 8 0.5712 -4.8719 2.1777 15 6 0.0005 -6.6603 0.6846 16 6 -0.7539 -7.6125 1.3519 17 6 -1.1939 -8.7386 0.6749 18 6 -0.8859 -8.9180 -0.6617 19 35 -1.4969 -10.4616 -1.5673 20 6 -0.1314 -7.9733 -1.3421 21 6 0.3152 -6.8430 -0.6773 22 6 1.1162 -5.6640 -1.0689 23 8 1.5774 -5.4551 -2.1728 24 1 -0.4850 0.8400 0.0004 25 1 2.9190 -3.6477 0.0013 26 1 -0.9980 -7.4772 2.3951 27 1 -1.7821 -9.4807 1.1942 28 1 0.1030 -8.1163 -2.3866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557224172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:45 Heat of formation + Delta-G solvation = -38.914225 kcal Electronic energy + Delta-G solvation = -20245.775872 eV Core-core repulsion = 16695.553650 eV Total energy + Delta-G solvation = -3550.222221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48722 -40.08306 -39.91188 -39.03693 -37.11505 -35.02920 -34.58893 -33.06840 -32.06043 -30.44657 -28.46670 -26.36301 -25.14455 -23.28069 -22.77261 -21.25815 -20.03222 -18.99868 -18.88474 -17.92880 -17.81119 -17.20272 -16.59479 -16.44359 -15.98054 -15.68502 -15.33144 -15.30512 -14.81568 -14.77680 -14.40863 -13.57968 -13.44101 -13.07181 -12.87618 -12.80064 -12.13101 -12.12035 -12.00011 -11.90323 -11.49371 -11.43155 -11.02768 -10.51403 -10.28949 -10.20860 -10.06760 -8.47524 -7.09158 -1.31980 -0.34696 0.24155 0.48349 0.65087 1.39704 1.41829 1.56511 1.70757 2.19504 2.20928 2.24859 2.45975 2.81266 3.15730 3.31584 3.38717 3.72207 3.84733 3.96382 4.48724 4.53518 4.68919 4.80063 5.17302 5.22034 5.32096 5.36983 5.50163 5.94825 5.96830 6.61610 6.67179 7.01217 8.15842 8.47344 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.034175 B = 0.002785 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.125017 B =10052.676413 C =10354.544989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.027 3.973 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.551 4.551 8 H 0.104 0.896 9 C 0.537 3.463 10 O -0.612 6.612 11 N -0.542 5.542 12 N -0.381 5.381 13 C 0.564 3.436 14 O -0.486 6.486 15 C -0.123 4.123 16 C -0.024 4.024 17 C -0.040 4.040 18 C -0.074 4.074 19 Br -0.004 7.004 20 C -0.010 4.010 21 C -0.135 4.135 22 C 0.567 3.433 23 O -0.487 6.487 24 H 0.281 0.719 25 H 0.421 0.579 26 H 0.178 0.822 27 H 0.197 0.803 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -23.621 -0.373 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.190 4.190 3 Si 0.831 3.169 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.589 4.589 8 H 0.122 0.878 9 C 0.344 3.656 10 O -0.496 6.496 11 N -0.296 5.296 12 N -0.208 5.208 13 C 0.354 3.646 14 O -0.358 6.358 15 C -0.129 4.129 16 C -0.044 4.044 17 C -0.059 4.059 18 C -0.154 4.154 19 Br 0.082 6.918 20 C -0.030 4.030 21 C -0.141 4.141 22 C 0.357 3.643 23 O -0.360 6.360 24 H 0.091 0.909 25 H 0.264 0.736 26 H 0.196 0.804 27 H 0.214 0.786 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.960 -23.660 -0.720 23.855 hybrid contribution 0.973 1.515 0.049 1.801 sum -1.987 -22.145 -0.672 22.244 Atomic orbital electron populations 1.70159 1.09799 1.29900 1.34464 1.27167 0.95741 1.05229 0.90815 0.84832 0.78030 0.73344 0.80658 1.17385 1.19590 1.17369 1.21232 0.95385 0.87615 1.54637 0.87793 1.19395 0.87594 0.82316 0.76289 1.90586 1.15898 1.86035 1.57045 1.45967 1.07113 0.92691 1.83780 1.45495 1.48480 1.14384 1.12464 1.19246 0.77136 0.85202 0.83035 1.90751 1.56649 1.65739 1.22623 1.20486 1.02523 0.94622 0.95260 1.21176 0.91387 0.89749 1.02068 1.21867 0.95793 0.96699 0.91539 1.22160 1.01489 0.95392 0.96346 1.96857 1.87157 1.31021 1.76763 1.20804 0.92371 0.88688 1.01185 1.20113 1.02670 0.95972 0.95312 1.19146 0.78879 0.83317 0.82916 1.90743 1.47760 1.76052 1.21405 0.90862 0.73647 0.80417 0.78595 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.92 11.83 21.84 0.26 -49.66 15 2 C 0.03 1.49 5.50 85.31 0.47 1.96 15 3 Si 1.01 40.24 29.56 68.60 2.03 42.27 15 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 7 C -0.55 -31.39 9.54 24.83 0.24 -31.15 15 8 H 0.10 5.14 7.85 -2.91 -0.02 5.12 15 9 C 0.54 32.65 7.81 86.36 0.67 33.32 15 10 O -0.61 -42.69 15.24 -4.31 -0.07 -42.76 15 11 N -0.54 -27.26 6.06 -176.62 -1.07 -28.33 15 12 N -0.38 -17.38 2.95 -432.79 -1.28 -18.66 15 13 C 0.56 23.91 7.98 86.80 0.69 24.60 15 14 O -0.49 -23.63 17.99 -3.59 -0.06 -23.69 15 15 C -0.12 -3.68 6.40 -20.00 -0.13 -3.81 15 16 C -0.02 -0.45 10.09 22.43 0.23 -0.23 15 17 C -0.04 -0.49 9.77 22.37 0.22 -0.27 15 18 C -0.07 -1.14 6.23 22.41 0.14 -1.00 15 19 Br 0.00 -0.05 33.68 -20.37 -0.69 -0.74 15 20 C -0.01 -0.21 9.83 22.46 0.22 0.01 15 21 C -0.13 -4.03 6.40 -20.01 -0.13 -4.16 15 22 C 0.57 23.05 8.19 86.82 0.71 23.76 15 23 O -0.49 -21.76 17.99 -3.57 -0.06 -21.82 15 24 H 0.28 15.49 8.29 -92.71 -0.77 14.72 15 25 H 0.42 18.02 8.81 -213.32 -1.88 16.14 15 26 H 0.18 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.20 0.81 8.06 -2.91 -0.02 0.79 15 28 H 0.17 3.01 8.06 -2.91 -0.02 2.98 15 Total: -1.00 -86.71 293.50 1.77 -84.94 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.62 Total: 15.41 kcal Atomic # 6 Polarization: 39.71 SS G_CDS: 3.33 Total: 43.04 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -2.09 Total: -96.65 kcal Atomic # 8 Polarization: -88.07 SS G_CDS: -0.19 Total: -88.27 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.74 kcal Total: -86.71 1.77 -84.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557224172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.022 kcal (2) G-P(sol) polarization free energy of solvation -86.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds